co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0019484: beta-alanine catabolic process	0.00E+00
3	GO:0010219: regulation of vernalization response	0.00E+00
4	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
5	GO:0030644: cellular chloride ion homeostasis	0.00E+00
6	GO:0010378: temperature compensation of the circadian clock	0.00E+00
7	GO:0005997: xylulose metabolic process	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0051928: positive regulation of calcium ion transport	0.00E+00
10	GO:0042906: xanthine transport	0.00E+00
11	GO:0042344: indole glucosinolate catabolic process	1.57E-05
12	GO:0006020: inositol metabolic process	3.50E-05
13	GO:0009817: defense response to fungus, incompatible interaction	1.05E-04
14	GO:1902265: abscisic acid homeostasis	3.11E-04
15	GO:0009865: pollen tube adhesion	3.11E-04
16	GO:0071366: cellular response to indolebutyric acid stimulus	3.11E-04
17	GO:0015812: gamma-aminobutyric acid transport	3.11E-04
18	GO:0006540: glutamate decarboxylation to succinate	3.11E-04
19	GO:0032958: inositol phosphate biosynthetic process	3.11E-04
20	GO:0006369: termination of RNA polymerase II transcription	3.11E-04
21	GO:0009450: gamma-aminobutyric acid catabolic process	3.11E-04
22	GO:1900060: negative regulation of ceramide biosynthetic process	3.11E-04
23	GO:1990641: response to iron ion starvation	3.11E-04
24	GO:0009415: response to water	3.21E-04
25	GO:0010286: heat acclimation	5.79E-04
26	GO:0009641: shade avoidance	6.53E-04
27	GO:0015857: uracil transport	6.81E-04
28	GO:1902884: positive regulation of response to oxidative stress	6.81E-04
29	GO:0006101: citrate metabolic process	6.81E-04
30	GO:0051170: nuclear import	6.81E-04
31	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway	6.81E-04
32	GO:0030003: cellular cation homeostasis	6.81E-04
33	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	6.81E-04
34	GO:0090156: cellular sphingolipid homeostasis	6.81E-04
35	GO:0015720: allantoin transport	6.81E-04
36	GO:0010033: response to organic substance	6.81E-04
37	GO:0006883: cellular sodium ion homeostasis	6.81E-04
38	GO:0048833: specification of floral organ number	6.81E-04
39	GO:0052544: defense response by callose deposition in cell wall	7.52E-04
40	GO:0010218: response to far red light	1.06E-03
41	GO:0006954: inflammatory response	1.10E-03
42	GO:1901562: response to paraquat	1.10E-03
43	GO:0071705: nitrogen compound transport	1.10E-03
44	GO:0030029: actin filament-based process	1.10E-03
45	GO:0009409: response to cold	1.14E-03
46	GO:0009737: response to abscisic acid	1.18E-03
47	GO:0034976: response to endoplasmic reticulum stress	1.36E-03
48	GO:0015749: monosaccharide transport	1.58E-03
49	GO:0009113: purine nucleobase biosynthetic process	1.58E-03
50	GO:0007623: circadian rhythm	1.58E-03
51	GO:1901332: negative regulation of lateral root development	1.58E-03
52	GO:0019438: aromatic compound biosynthetic process	1.58E-03
53	GO:0006624: vacuolar protein processing	1.58E-03
54	GO:0010601: positive regulation of auxin biosynthetic process	1.58E-03
55	GO:0035556: intracellular signal transduction	1.60E-03
56	GO:0042542: response to hydrogen peroxide	1.65E-03
57	GO:0048511: rhythmic process	1.82E-03
58	GO:0009269: response to desiccation	1.82E-03
59	GO:0010600: regulation of auxin biosynthetic process	2.12E-03
60	GO:0006646: phosphatidylethanolamine biosynthetic process	2.12E-03
61	GO:0009687: abscisic acid metabolic process	2.12E-03
62	GO:0015743: malate transport	2.12E-03
63	GO:0048442: sepal development	2.12E-03
64	GO:0009765: photosynthesis, light harvesting	2.12E-03
65	GO:0006536: glutamate metabolic process	2.12E-03
66	GO:1901002: positive regulation of response to salt stress	2.12E-03
67	GO:0048443: stamen development	2.36E-03
68	GO:0051603: proteolysis involved in cellular protein catabolic process	2.65E-03
69	GO:0043097: pyrimidine nucleoside salvage	2.71E-03
70	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.71E-03
71	GO:0046323: glucose import	2.98E-03
72	GO:0007165: signal transduction	3.19E-03
73	GO:0048544: recognition of pollen	3.20E-03
74	GO:0006206: pyrimidine nucleobase metabolic process	3.35E-03
75	GO:0000741: karyogamy	3.35E-03
76	GO:0015691: cadmium ion transport	3.35E-03
77	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	3.35E-03
78	GO:0042732: D-xylose metabolic process	3.35E-03
79	GO:0006635: fatty acid beta-oxidation	3.68E-03
80	GO:0009651: response to salt stress	3.79E-03
81	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.03E-03
82	GO:0006694: steroid biosynthetic process	4.03E-03
83	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.03E-03
84	GO:0071470: cellular response to osmotic stress	4.03E-03
85	GO:0048437: floral organ development	4.76E-03
86	GO:0009645: response to low light intensity stimulus	4.76E-03
87	GO:0006333: chromatin assembly or disassembly	4.76E-03
88	GO:0009396: folic acid-containing compound biosynthetic process	4.76E-03
89	GO:0010044: response to aluminum ion	4.76E-03
90	GO:0098869: cellular oxidant detoxification	4.76E-03
91	GO:0009395: phospholipid catabolic process	4.76E-03
92	GO:0044550: secondary metabolite biosynthetic process	4.87E-03
93	GO:0009819: drought recovery	5.53E-03
94	GO:0006102: isocitrate metabolic process	5.53E-03
95	GO:0016559: peroxisome fission	5.53E-03
96	GO:0009061: anaerobic respiration	5.53E-03
97	GO:0010928: regulation of auxin mediated signaling pathway	5.53E-03
98	GO:0001510: RNA methylation	6.33E-03
99	GO:0009808: lignin metabolic process	6.33E-03
100	GO:0010099: regulation of photomorphogenesis	6.33E-03
101	GO:0009827: plant-type cell wall modification	6.33E-03
102	GO:0046916: cellular transition metal ion homeostasis	7.19E-03
103	GO:0006098: pentose-phosphate shunt	7.19E-03
104	GO:0000160: phosphorelay signal transduction system	7.29E-03
105	GO:0006811: ion transport	7.65E-03
106	GO:0009631: cold acclimation	8.02E-03
107	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.07E-03
108	GO:0008202: steroid metabolic process	8.07E-03
109	GO:0035999: tetrahydrofolate interconversion	8.07E-03
110	GO:0009637: response to blue light	8.80E-03
111	GO:0009970: cellular response to sulfate starvation	9.00E-03
112	GO:0006995: cellular response to nitrogen starvation	9.00E-03
113	GO:0048441: petal development	9.00E-03
114	GO:0055062: phosphate ion homeostasis	9.00E-03
115	GO:0006099: tricarboxylic acid cycle	9.20E-03
116	GO:0009682: induced systemic resistance	9.96E-03
117	GO:0016485: protein processing	9.96E-03
118	GO:0030148: sphingolipid biosynthetic process	9.96E-03
119	GO:0006378: mRNA polyadenylation	9.96E-03
120	GO:0006816: calcium ion transport	9.96E-03
121	GO:0016925: protein sumoylation	1.10E-02
122	GO:0009640: photomorphogenesis	1.14E-02
123	GO:0010114: response to red light	1.14E-02
124	GO:0006807: nitrogen compound metabolic process	1.20E-02
125	GO:0050826: response to freezing	1.20E-02
126	GO:0009718: anthocyanin-containing compound biosynthetic process	1.20E-02
127	GO:0008643: carbohydrate transport	1.23E-02
128	GO:0009644: response to high light intensity	1.23E-02
129	GO:0006541: glutamine metabolic process	1.31E-02
130	GO:0007034: vacuolar transport	1.31E-02
131	GO:0009266: response to temperature stimulus	1.31E-02
132	GO:0048440: carpel development	1.31E-02
133	GO:0006855: drug transmembrane transport	1.33E-02
134	GO:0000165: MAPK cascade	1.38E-02
135	GO:0019853: L-ascorbic acid biosynthetic process	1.42E-02
136	GO:0005985: sucrose metabolic process	1.42E-02
137	GO:0010030: positive regulation of seed germination	1.42E-02
138	GO:0007031: peroxisome organization	1.42E-02
139	GO:0006970: response to osmotic stress	1.53E-02
140	GO:0009585: red, far-red light phototransduction	1.54E-02
141	GO:0006857: oligopeptide transport	1.65E-02
142	GO:0009414: response to water deprivation	1.72E-02
143	GO:0006874: cellular calcium ion homeostasis	1.77E-02
144	GO:0009768: photosynthesis, light harvesting in photosystem I	1.77E-02
145	GO:0016575: histone deacetylation	1.77E-02
146	GO:0042742: defense response to bacterium	1.79E-02
147	GO:0006979: response to oxidative stress	1.81E-02
148	GO:0080167: response to karrikin	1.83E-02
149	GO:0009416: response to light stimulus	1.84E-02
150	GO:0003333: amino acid transmembrane transport	1.89E-02
151	GO:0010431: seed maturation	1.89E-02
152	GO:0035428: hexose transmembrane transport	2.01E-02
153	GO:0031348: negative regulation of defense response	2.01E-02
154	GO:0019748: secondary metabolic process	2.01E-02
155	GO:0010017: red or far-red light signaling pathway	2.01E-02
156	GO:0009693: ethylene biosynthetic process	2.14E-02
157	GO:0071215: cellular response to abscisic acid stimulus	2.14E-02
158	GO:0006012: galactose metabolic process	2.14E-02
159	GO:0055114: oxidation-reduction process	2.32E-02
160	GO:0045892: negative regulation of transcription, DNA-templated	2.34E-02
161	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.41E-02
162	GO:0080022: primary root development	2.55E-02
163	GO:0042391: regulation of membrane potential	2.55E-02
164	GO:0010051: xylem and phloem pattern formation	2.55E-02
165	GO:0015991: ATP hydrolysis coupled proton transport	2.55E-02
166	GO:0042631: cellular response to water deprivation	2.55E-02
167	GO:0006520: cellular amino acid metabolic process	2.68E-02
168	GO:0071472: cellular response to salt stress	2.68E-02
169	GO:0010154: fruit development	2.68E-02
170	GO:0010197: polar nucleus fusion	2.68E-02
171	GO:0009960: endosperm development	2.68E-02
172	GO:0006457: protein folding	2.70E-02
173	GO:0006814: sodium ion transport	2.83E-02
174	GO:0042752: regulation of circadian rhythm	2.83E-02
175	GO:0009646: response to absence of light	2.83E-02
176	GO:0006468: protein phosphorylation	2.96E-02
177	GO:0010183: pollen tube guidance	2.97E-02
178	GO:0008654: phospholipid biosynthetic process	2.97E-02
179	GO:0009556: microsporogenesis	2.97E-02
180	GO:0009408: response to heat	2.98E-02
181	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.12E-02
182	GO:0019760: glucosinolate metabolic process	3.58E-02
183	GO:0046686: response to cadmium ion	3.75E-02
184	GO:0010150: leaf senescence	3.78E-02
185	GO:0001666: response to hypoxia	4.05E-02
186	GO:0016126: sterol biosynthetic process	4.05E-02
187	GO:0010029: regulation of seed germination	4.22E-02
188	GO:0007166: cell surface receptor signaling pathway	4.32E-02
189	GO:0009627: systemic acquired resistance	4.38E-02
190	GO:0009617: response to bacterium	4.50E-02
191	GO:0010468: regulation of gene expression	4.50E-02
192	GO:0015995: chlorophyll biosynthetic process	4.55E-02
193	GO:0048573: photoperiodism, flowering	4.55E-02
194	GO:0006950: response to stress	4.55E-02
195	GO:0018298: protein-chromophore linkage	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
2	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
3	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
4	GO:0005272: sodium channel activity	0.00E+00
5	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
8	GO:0009045: xylose isomerase activity	0.00E+00
9	GO:0050897: cobalt ion binding	9.65E-06
10	GO:0004856: xylulokinase activity	3.11E-04
11	GO:0004112: cyclic-nucleotide phosphodiesterase activity	3.11E-04
12	GO:0000828: inositol hexakisphosphate kinase activity	3.11E-04
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.11E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	3.11E-04
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	3.11E-04
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.11E-04
17	GO:0009679: hexose:proton symporter activity	3.11E-04
18	GO:0035671: enone reductase activity	3.11E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	3.11E-04
20	GO:0046870: cadmium ion binding	3.11E-04
21	GO:0000989: transcription factor activity, transcription factor binding	4.73E-04
22	GO:0016301: kinase activity	6.55E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.81E-04
24	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	6.81E-04
25	GO:0004329: formate-tetrahydrofolate ligase activity	6.81E-04
26	GO:0004352: glutamate dehydrogenase (NAD+) activity	6.81E-04
27	GO:0047209: coniferyl-alcohol glucosyltransferase activity	6.81E-04
28	GO:0015180: L-alanine transmembrane transporter activity	6.81E-04
29	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	6.81E-04
30	GO:0032791: lead ion binding	6.81E-04
31	GO:0005274: allantoin uptake transmembrane transporter activity	6.81E-04
32	GO:0004609: phosphatidylserine decarboxylase activity	6.81E-04
33	GO:0003994: aconitate hydratase activity	6.81E-04
34	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	6.81E-04
35	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	6.81E-04
36	GO:0004839: ubiquitin activating enzyme activity	6.81E-04
37	GO:0004175: endopeptidase activity	1.09E-03
38	GO:0017150: tRNA dihydrouridine synthase activity	1.10E-03
39	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.10E-03
40	GO:0004096: catalase activity	1.10E-03
41	GO:0019948: SUMO activating enzyme activity	1.10E-03
42	GO:0015086: cadmium ion transmembrane transporter activity	1.58E-03
43	GO:0004108: citrate (Si)-synthase activity	1.58E-03
44	GO:0030527: structural constituent of chromatin	1.58E-03
45	GO:0015181: arginine transmembrane transporter activity	1.58E-03
46	GO:0015189: L-lysine transmembrane transporter activity	1.58E-03
47	GO:0048027: mRNA 5'-UTR binding	1.58E-03
48	GO:0004707: MAP kinase activity	1.82E-03
49	GO:0003995: acyl-CoA dehydrogenase activity	2.12E-03
50	GO:0005313: L-glutamate transmembrane transporter activity	2.12E-03
51	GO:0005253: anion channel activity	2.12E-03
52	GO:0004737: pyruvate decarboxylase activity	2.12E-03
53	GO:0015210: uracil transmembrane transporter activity	2.12E-03
54	GO:0005215: transporter activity	2.26E-03
55	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.71E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.71E-03
57	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.71E-03
58	GO:0003997: acyl-CoA oxidase activity	2.71E-03
59	GO:0010294: abscisic acid glucosyltransferase activity	2.71E-03
60	GO:0015145: monosaccharide transmembrane transporter activity	2.71E-03
61	GO:0008641: small protein activating enzyme activity	2.71E-03
62	GO:0019137: thioglucosidase activity	3.35E-03
63	GO:0000293: ferric-chelate reductase activity	3.35E-03
64	GO:0030976: thiamine pyrophosphate binding	3.35E-03
65	GO:0004629: phospholipase C activity	3.35E-03
66	GO:0004197: cysteine-type endopeptidase activity	3.92E-03
67	GO:0004849: uridine kinase activity	4.03E-03
68	GO:0070300: phosphatidic acid binding	4.03E-03
69	GO:0004602: glutathione peroxidase activity	4.03E-03
70	GO:0004435: phosphatidylinositol phospholipase C activity	4.03E-03
71	GO:0005261: cation channel activity	4.03E-03
72	GO:0000156: phosphorelay response regulator activity	4.19E-03
73	GO:0015140: malate transmembrane transporter activity	4.76E-03
74	GO:0016831: carboxy-lyase activity	4.76E-03
75	GO:0004525: ribonuclease III activity	5.53E-03
76	GO:0004033: aldo-keto reductase (NADP) activity	5.53E-03
77	GO:0001104: RNA polymerase II transcription cofactor activity	6.33E-03
78	GO:0005267: potassium channel activity	6.33E-03
79	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.33E-03
80	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.34E-03
81	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.19E-03
82	GO:0015297: antiporter activity	7.51E-03
83	GO:0005351: sugar:proton symporter activity	7.73E-03
84	GO:0008171: O-methyltransferase activity	9.00E-03
85	GO:0004177: aminopeptidase activity	9.96E-03
86	GO:0004565: beta-galactosidase activity	1.20E-02
87	GO:0008081: phosphoric diester hydrolase activity	1.20E-02
88	GO:0005262: calcium channel activity	1.20E-02
89	GO:0004970: ionotropic glutamate receptor activity	1.42E-02
90	GO:0005217: intracellular ligand-gated ion channel activity	1.42E-02
91	GO:0030552: cAMP binding	1.42E-02
92	GO:0030553: cGMP binding	1.42E-02
93	GO:0031409: pigment binding	1.53E-02
94	GO:0004407: histone deacetylase activity	1.65E-02
95	GO:0005524: ATP binding	1.75E-02
96	GO:0043424: protein histidine kinase binding	1.77E-02
97	GO:0005216: ion channel activity	1.77E-02
98	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.89E-02
99	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.00E-02
100	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.00E-02
101	GO:0003756: protein disulfide isomerase activity	2.27E-02
102	GO:0008270: zinc ion binding	2.36E-02
103	GO:0030551: cyclic nucleotide binding	2.55E-02
104	GO:0005249: voltage-gated potassium channel activity	2.55E-02
105	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.82E-02
106	GO:0005355: glucose transmembrane transporter activity	2.83E-02
107	GO:0005507: copper ion binding	3.11E-02
108	GO:0019825: oxygen binding	3.11E-02
109	GO:0015144: carbohydrate transmembrane transporter activity	3.28E-02
110	GO:0005515: protein binding	3.43E-02
111	GO:0005200: structural constituent of cytoskeleton	3.73E-02
112	GO:0020037: heme binding	3.83E-02
113	GO:0016168: chlorophyll binding	4.22E-02
114	GO:0008194: UDP-glycosyltransferase activity	4.23E-02
115	GO:0030247: polysaccharide binding	4.55E-02
116	GO:0102483: scopolin beta-glucosidase activity	4.55E-02
117	GO:0005509: calcium ion binding	4.60E-02
118	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.72E-02
119	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	7.78E-06
2	GO:0005777: peroxisome	2.16E-05
3	GO:0000323: lytic vacuole	3.50E-05
4	GO:0005886: plasma membrane	5.28E-05
5	GO:0005773: vacuole	3.06E-04
6	GO:0035339: SPOTS complex	3.11E-04
7	GO:0005849: mRNA cleavage factor complex	1.58E-03
8	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.12E-03
9	GO:0009898: cytoplasmic side of plasma membrane	2.12E-03
10	GO:0032586: protein storage vacuole membrane	2.12E-03
11	GO:0070847: core mediator complex	3.35E-03
12	GO:0005851: eukaryotic translation initiation factor 2B complex	3.35E-03
13	GO:0000815: ESCRT III complex	4.03E-03
14	GO:0000326: protein storage vacuole	6.33E-03
15	GO:0009514: glyoxysome	6.33E-03
16	GO:0005779: integral component of peroxisomal membrane	6.33E-03
17	GO:0005829: cytosol	7.15E-03
18	GO:0009705: plant-type vacuole membrane	7.97E-03
19	GO:0016020: membrane	8.59E-03
20	GO:0005764: lysosome	1.31E-02
21	GO:0030076: light-harvesting complex	1.42E-02
22	GO:0031966: mitochondrial membrane	1.43E-02
23	GO:0005783: endoplasmic reticulum	2.33E-02
24	GO:0005774: vacuolar membrane	2.58E-02
25	GO:0010287: plastoglobule	2.60E-02
26	GO:0009506: plasmodesma	2.66E-02
27	GO:0009522: photosystem I	2.83E-02
28	GO:0031965: nuclear membrane	2.97E-02
29	GO:0009523: photosystem II	2.97E-02
30	GO:0016592: mediator complex	3.27E-02
31	GO:0000785: chromatin	3.27E-02
32	GO:0043231: intracellular membrane-bounded organelle	3.36E-02
33	GO:0005778: peroxisomal membrane	3.73E-02