co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010111: glyoxysome organization	0.00E+00
2	GO:0000390: spliceosomal complex disassembly	0.00E+00
3	GO:0032889: regulation of vacuole fusion, non-autophagic	0.00E+00
4	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
5	GO:0043171: peptide catabolic process	0.00E+00
6	GO:0044249: cellular biosynthetic process	0.00E+00
7	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
8	GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0060560: developmental growth involved in morphogenesis	0.00E+00
10	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
11	GO:0048867: stem cell fate determination	0.00E+00
12	GO:0005997: xylulose metabolic process	0.00E+00
13	GO:0009737: response to abscisic acid	1.37E-04
14	GO:0019509: L-methionine salvage from methylthioadenosine	2.05E-04
15	GO:0006333: chromatin assembly or disassembly	2.67E-04
16	GO:1903648: positive regulation of chlorophyll catabolic process	3.22E-04
17	GO:0046167: glycerol-3-phosphate biosynthetic process	3.22E-04
18	GO:1990641: response to iron ion starvation	3.22E-04
19	GO:1902265: abscisic acid homeostasis	3.22E-04
20	GO:0035494: SNARE complex disassembly	3.22E-04
21	GO:0009819: drought recovery	3.36E-04
22	GO:0009738: abscisic acid-activated signaling pathway	3.92E-04
23	GO:0019395: fatty acid oxidation	7.02E-04
24	GO:0015914: phospholipid transport	7.02E-04
25	GO:0050684: regulation of mRNA processing	7.02E-04
26	GO:0006641: triglyceride metabolic process	7.02E-04
27	GO:0006101: citrate metabolic process	7.02E-04
28	GO:0035542: regulation of SNARE complex assembly	7.02E-04
29	GO:0030003: cellular cation homeostasis	7.02E-04
30	GO:0016197: endosomal transport	7.02E-04
31	GO:0048573: photoperiodism, flowering	8.73E-04
32	GO:0006811: ion transport	1.12E-03
33	GO:0030029: actin filament-based process	1.14E-03
34	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	1.14E-03
35	GO:0009663: plasmodesma organization	1.14E-03
36	GO:0042344: indole glucosinolate catabolic process	1.14E-03
37	GO:0019563: glycerol catabolic process	1.14E-03
38	GO:0032784: regulation of DNA-templated transcription, elongation	1.14E-03
39	GO:0071732: cellular response to nitric oxide	1.28E-03
40	GO:0006886: intracellular protein transport	1.52E-03
41	GO:0006882: cellular zinc ion homeostasis	1.63E-03
42	GO:0010601: positive regulation of auxin biosynthetic process	1.63E-03
43	GO:0006072: glycerol-3-phosphate metabolic process	1.63E-03
44	GO:0015749: monosaccharide transport	1.63E-03
45	GO:0051601: exocyst localization	1.63E-03
46	GO:1901332: negative regulation of lateral root development	1.63E-03
47	GO:0006874: cellular calcium ion homeostasis	1.74E-03
48	GO:0035556: intracellular signal transduction	1.76E-03
49	GO:0009414: response to water deprivation	1.91E-03
50	GO:0006646: phosphatidylethanolamine biosynthetic process	2.19E-03
51	GO:0009687: abscisic acid metabolic process	2.19E-03
52	GO:0015743: malate transport	2.19E-03
53	GO:0033320: UDP-D-xylose biosynthetic process	2.19E-03
54	GO:0010188: response to microbial phytotoxin	2.19E-03
55	GO:0006878: cellular copper ion homeostasis	2.19E-03
56	GO:0010468: regulation of gene expression	2.23E-03
57	GO:0071369: cellular response to ethylene stimulus	2.28E-03
58	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.68E-03
59	GO:0000380: alternative mRNA splicing, via spliceosome	2.80E-03
60	GO:0006656: phosphatidylcholine biosynthetic process	2.80E-03
61	GO:0043097: pyrimidine nucleoside salvage	2.80E-03
62	GO:0042732: D-xylose metabolic process	3.46E-03
63	GO:0006206: pyrimidine nucleobase metabolic process	3.46E-03
64	GO:0000741: karyogamy	3.46E-03
65	GO:0006970: response to osmotic stress	3.72E-03
66	GO:0006891: intra-Golgi vesicle-mediated transport	3.85E-03
67	GO:0006635: fatty acid beta-oxidation	3.85E-03
68	GO:0009409: response to cold	3.90E-03
69	GO:0045926: negative regulation of growth	4.17E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	4.17E-03
71	GO:0031930: mitochondria-nucleus signaling pathway	4.17E-03
72	GO:0071281: cellular response to iron ion	4.38E-03
73	GO:0019760: glucosinolate metabolic process	4.67E-03
74	GO:0010044: response to aluminum ion	4.92E-03
75	GO:0098869: cellular oxidant detoxification	4.92E-03
76	GO:0048437: floral organ development	4.92E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.92E-03
78	GO:1900057: positive regulation of leaf senescence	4.92E-03
79	GO:0010286: heat acclimation	4.95E-03
80	GO:0006102: isocitrate metabolic process	5.71E-03
81	GO:0009061: anaerobic respiration	5.71E-03
82	GO:0006491: N-glycan processing	5.71E-03
83	GO:0006605: protein targeting	5.71E-03
84	GO:0009415: response to water	5.71E-03
85	GO:0006875: cellular metal ion homeostasis	5.71E-03
86	GO:0010078: maintenance of root meristem identity	5.71E-03
87	GO:0006972: hyperosmotic response	6.55E-03
88	GO:0071482: cellular response to light stimulus	6.55E-03
89	GO:0060321: acceptance of pollen	6.55E-03
90	GO:0001510: RNA methylation	6.55E-03
91	GO:0006950: response to stress	6.56E-03
92	GO:0009817: defense response to fungus, incompatible interaction	7.27E-03
93	GO:0010345: suberin biosynthetic process	7.42E-03
94	GO:0009051: pentose-phosphate shunt, oxidative branch	7.42E-03
95	GO:0046916: cellular transition metal ion homeostasis	7.42E-03
96	GO:0005982: starch metabolic process	8.34E-03
97	GO:0008202: steroid metabolic process	8.34E-03
98	GO:0006298: mismatch repair	9.30E-03
99	GO:0010215: cellulose microfibril organization	9.30E-03
100	GO:0009970: cellular response to sulfate starvation	9.30E-03
101	GO:0007064: mitotic sister chromatid cohesion	9.30E-03
102	GO:0006896: Golgi to vacuole transport	9.30E-03
103	GO:0006995: cellular response to nitrogen starvation	9.30E-03
104	GO:0006099: tricarboxylic acid cycle	9.65E-03
105	GO:0007165: signal transduction	9.85E-03
106	GO:0006816: calcium ion transport	1.03E-02
107	GO:0009682: induced systemic resistance	1.03E-02
108	GO:0052544: defense response by callose deposition in cell wall	1.03E-02
109	GO:0030001: metal ion transport	1.05E-02
110	GO:0009617: response to bacterium	1.06E-02
111	GO:0009651: response to salt stress	1.09E-02
112	GO:0010152: pollen maturation	1.13E-02
113	GO:0016925: protein sumoylation	1.13E-02
114	GO:0042542: response to hydrogen peroxide	1.14E-02
115	GO:0006829: zinc II ion transport	1.24E-02
116	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.24E-02
117	GO:2000012: regulation of auxin polar transport	1.24E-02
118	GO:0010102: lateral root morphogenesis	1.24E-02
119	GO:0006006: glucose metabolic process	1.24E-02
120	GO:0010143: cutin biosynthetic process	1.35E-02
121	GO:0002237: response to molecule of bacterial origin	1.35E-02
122	GO:0007034: vacuolar transport	1.35E-02
123	GO:0016310: phosphorylation	1.39E-02
124	GO:0000165: MAPK cascade	1.45E-02
125	GO:0007033: vacuole organization	1.46E-02
126	GO:0009225: nucleotide-sugar metabolic process	1.46E-02
127	GO:0010030: positive regulation of seed germination	1.46E-02
128	GO:0009846: pollen germination	1.50E-02
129	GO:0010025: wax biosynthetic process	1.58E-02
130	GO:0034976: response to endoplasmic reticulum stress	1.58E-02
131	GO:0006813: potassium ion transport	1.61E-02
132	GO:2000377: regulation of reactive oxygen species metabolic process	1.70E-02
133	GO:0045333: cellular respiration	1.70E-02
134	GO:0006289: nucleotide-excision repair	1.70E-02
135	GO:0010073: meristem maintenance	1.83E-02
136	GO:0006825: copper ion transport	1.83E-02
137	GO:0008299: isoprenoid biosynthetic process	1.83E-02
138	GO:0016575: histone deacetylation	1.83E-02
139	GO:0009695: jasmonic acid biosynthetic process	1.83E-02
140	GO:0031408: oxylipin biosynthetic process	1.95E-02
141	GO:0030433: ubiquitin-dependent ERAD pathway	2.08E-02
142	GO:0006012: galactose metabolic process	2.22E-02
143	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.22E-02
144	GO:0071215: cellular response to abscisic acid stimulus	2.22E-02
145	GO:0009306: protein secretion	2.35E-02
146	GO:0006396: RNA processing	2.37E-02
147	GO:0045893: positive regulation of transcription, DNA-templated	2.43E-02
148	GO:0042147: retrograde transport, endosome to Golgi	2.49E-02
149	GO:0000413: protein peptidyl-prolyl isomerization	2.63E-02
150	GO:0010051: xylem and phloem pattern formation	2.63E-02
151	GO:0042631: cellular response to water deprivation	2.63E-02
152	GO:0000226: microtubule cytoskeleton organization	2.63E-02
153	GO:0042335: cuticle development	2.63E-02
154	GO:0042391: regulation of membrane potential	2.63E-02
155	GO:0080022: primary root development	2.63E-02
156	GO:0010501: RNA secondary structure unwinding	2.63E-02
157	GO:0000398: mRNA splicing, via spliceosome	2.65E-02
158	GO:0055114: oxidation-reduction process	2.71E-02
159	GO:0010197: polar nucleus fusion	2.78E-02
160	GO:0046323: glucose import	2.78E-02
161	GO:0061025: membrane fusion	2.92E-02
162	GO:0006814: sodium ion transport	2.92E-02
163	GO:0042752: regulation of circadian rhythm	2.92E-02
164	GO:0048544: recognition of pollen	2.92E-02
165	GO:0008654: phospholipid biosynthetic process	3.07E-02
166	GO:0009556: microsporogenesis	3.07E-02
167	GO:0006623: protein targeting to vacuole	3.07E-02
168	GO:0009749: response to glucose	3.07E-02
169	GO:0009630: gravitropism	3.38E-02
170	GO:0006633: fatty acid biosynthetic process	3.61E-02
171	GO:0016036: cellular response to phosphate starvation	3.70E-02
172	GO:0006904: vesicle docking involved in exocytosis	3.86E-02
173	GO:0071805: potassium ion transmembrane transport	3.86E-02
174	GO:0051607: defense response to virus	4.03E-02
175	GO:0001666: response to hypoxia	4.19E-02
176	GO:0009911: positive regulation of flower development	4.19E-02
177	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.36E-02
178	GO:0010029: regulation of seed germination	4.36E-02
179	GO:0006888: ER to Golgi vesicle-mediated transport	4.71E-02
180	GO:0016049: cell growth	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
2	GO:1990446: U1 snRNP binding	0.00E+00
3	GO:0005272: sodium channel activity	0.00E+00
4	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
5	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
6	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
7	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
8	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
9	GO:0004370: glycerol kinase activity	0.00E+00
10	GO:0019829: cation-transporting ATPase activity	1.67E-05
11	GO:0030527: structural constituent of chromatin	3.71E-05
12	GO:0009679: hexose:proton symporter activity	3.22E-04
13	GO:0035671: enone reductase activity	3.22E-04
14	GO:0010013: N-1-naphthylphthalamic acid binding	3.22E-04
15	GO:0046870: cadmium ion binding	3.22E-04
16	GO:0004856: xylulokinase activity	3.22E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.22E-04
18	GO:0070006: metalloaminopeptidase activity	3.22E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	3.22E-04
20	GO:0004525: ribonuclease III activity	3.36E-04
21	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.85E-04
22	GO:0032791: lead ion binding	7.02E-04
23	GO:0004609: phosphatidylserine decarboxylase activity	7.02E-04
24	GO:0003994: aconitate hydratase activity	7.02E-04
25	GO:0004839: ubiquitin activating enzyme activity	7.02E-04
26	GO:0003988: acetyl-CoA C-acyltransferase activity	7.02E-04
27	GO:0019200: carbohydrate kinase activity	7.02E-04
28	GO:0004096: catalase activity	1.14E-03
29	GO:0005483: soluble NSF attachment protein activity	1.14E-03
30	GO:0019948: SUMO activating enzyme activity	1.14E-03
31	GO:0004180: carboxypeptidase activity	1.14E-03
32	GO:0005047: signal recognition particle binding	1.14E-03
33	GO:0017150: tRNA dihydrouridine synthase activity	1.14E-03
34	GO:0048027: mRNA 5'-UTR binding	1.63E-03
35	GO:0004108: citrate (Si)-synthase activity	1.63E-03
36	GO:0043424: protein histidine kinase binding	1.74E-03
37	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.91E-03
38	GO:0004707: MAP kinase activity	1.91E-03
39	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	2.19E-03
40	GO:0004737: pyruvate decarboxylase activity	2.19E-03
41	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.19E-03
42	GO:0019905: syntaxin binding	2.19E-03
43	GO:0008526: phosphatidylinositol transporter activity	2.19E-03
44	GO:0005253: anion channel activity	2.19E-03
45	GO:0042277: peptide binding	2.19E-03
46	GO:0009916: alternative oxidase activity	2.19E-03
47	GO:0010294: abscisic acid glucosyltransferase activity	2.80E-03
48	GO:0015145: monosaccharide transmembrane transporter activity	2.80E-03
49	GO:0008641: small protein activating enzyme activity	2.80E-03
50	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.80E-03
51	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.80E-03
52	GO:0030976: thiamine pyrophosphate binding	3.46E-03
53	GO:2001070: starch binding	3.46E-03
54	GO:0048040: UDP-glucuronate decarboxylase activity	3.46E-03
55	GO:0004629: phospholipase C activity	3.46E-03
56	GO:0019137: thioglucosidase activity	3.46E-03
57	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.46E-03
58	GO:0000293: ferric-chelate reductase activity	3.46E-03
59	GO:0003682: chromatin binding	3.61E-03
60	GO:0070403: NAD+ binding	4.17E-03
61	GO:0004849: uridine kinase activity	4.17E-03
62	GO:0070300: phosphatidic acid binding	4.17E-03
63	GO:0003950: NAD+ ADP-ribosyltransferase activity	4.17E-03
64	GO:0003730: mRNA 3'-UTR binding	4.17E-03
65	GO:0005261: cation channel activity	4.17E-03
66	GO:0004602: glutathione peroxidase activity	4.17E-03
67	GO:0003978: UDP-glucose 4-epimerase activity	4.17E-03
68	GO:0004435: phosphatidylinositol phospholipase C activity	4.17E-03
69	GO:0016831: carboxy-lyase activity	4.92E-03
70	GO:0015140: malate transmembrane transporter activity	4.92E-03
71	GO:0004869: cysteine-type endopeptidase inhibitor activity	5.71E-03
72	GO:0005267: potassium channel activity	6.55E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.55E-03
74	GO:0005375: copper ion transmembrane transporter activity	6.55E-03
75	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.42E-03
76	GO:0050897: cobalt ion binding	8.41E-03
77	GO:0015020: glucuronosyltransferase activity	9.30E-03
78	GO:0000149: SNARE binding	1.01E-02
79	GO:0004177: aminopeptidase activity	1.03E-02
80	GO:0005507: copper ion binding	1.06E-02
81	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.13E-02
82	GO:0005262: calcium channel activity	1.24E-02
83	GO:0005388: calcium-transporting ATPase activity	1.24E-02
84	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.24E-02
85	GO:0031624: ubiquitin conjugating enzyme binding	1.35E-02
86	GO:0003729: mRNA binding	1.38E-02
87	GO:0030552: cAMP binding	1.46E-02
88	GO:0030553: cGMP binding	1.46E-02
89	GO:0004970: ionotropic glutamate receptor activity	1.46E-02
90	GO:0005217: intracellular ligand-gated ion channel activity	1.46E-02
91	GO:0016301: kinase activity	1.51E-02
92	GO:0004407: histone deacetylase activity	1.70E-02
93	GO:0005216: ion channel activity	1.83E-02
94	GO:0015079: potassium ion transmembrane transporter activity	1.83E-02
95	GO:0003756: protein disulfide isomerase activity	2.35E-02
96	GO:0005249: voltage-gated potassium channel activity	2.63E-02
97	GO:0030551: cyclic nucleotide binding	2.63E-02
98	GO:0004722: protein serine/threonine phosphatase activity	2.73E-02
99	GO:0046873: metal ion transmembrane transporter activity	2.78E-02
100	GO:0016853: isomerase activity	2.92E-02
101	GO:0004872: receptor activity	3.07E-02
102	GO:0004842: ubiquitin-protein transferase activity	3.33E-02
103	GO:0015144: carbohydrate transmembrane transporter activity	3.44E-02
104	GO:0003684: damaged DNA binding	3.70E-02
105	GO:0005200: structural constituent of cytoskeleton	3.86E-02
106	GO:0005351: sugar:proton symporter activity	3.87E-02
107	GO:0008375: acetylglucosaminyltransferase activity	4.53E-02
108	GO:0102483: scopolin beta-glucosidase activity	4.71E-02
109	GO:0004004: ATP-dependent RNA helicase activity	4.71E-02
110	GO:0030247: polysaccharide binding	4.71E-02
111	GO:0008236: serine-type peptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0031981: nuclear lumen	0.00E+00
4	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
5	GO:0071942: XPC complex	0.00E+00
6	GO:0005886: plasma membrane	3.04E-04
7	GO:0016021: integral component of membrane	3.68E-04
8	GO:0043036: starch grain	7.02E-04
9	GO:0030897: HOPS complex	7.02E-04
10	GO:0005829: cytosol	7.67E-04
11	GO:0005783: endoplasmic reticulum	9.21E-04
12	GO:0005777: peroxisome	2.08E-03
13	GO:0005851: eukaryotic translation initiation factor 2B complex	3.46E-03
14	GO:0030140: trans-Golgi network transport vesicle	3.46E-03
15	GO:0000785: chromatin	4.11E-03
16	GO:0000815: ESCRT III complex	4.17E-03
17	GO:0016363: nuclear matrix	4.17E-03
18	GO:0005768: endosome	5.18E-03
19	GO:0005773: vacuole	5.70E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	5.71E-03
21	GO:0030131: clathrin adaptor complex	5.71E-03
22	GO:0009514: glyoxysome	6.55E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.55E-03
24	GO:0031090: organelle membrane	7.42E-03
25	GO:0009705: plant-type vacuole membrane	8.46E-03
26	GO:0030125: clathrin vesicle coat	9.30E-03
27	GO:0005765: lysosomal membrane	1.03E-02
28	GO:0031201: SNARE complex	1.10E-02
29	GO:0031902: late endosome membrane	1.10E-02
30	GO:0005774: vacuolar membrane	1.17E-02
31	GO:0005802: trans-Golgi network	1.30E-02
32	GO:0005795: Golgi stack	1.46E-02
33	GO:0030176: integral component of endoplasmic reticulum membrane	1.46E-02
34	GO:0009506: plasmodesma	1.50E-02
35	GO:0043234: protein complex	1.58E-02
36	GO:0070469: respiratory chain	1.83E-02
37	GO:0005905: clathrin-coated pit	1.95E-02
38	GO:0005737: cytoplasm	2.64E-02
39	GO:0005770: late endosome	2.78E-02
40	GO:0031965: nuclear membrane	3.07E-02
41	GO:0016020: membrane	3.18E-02
42	GO:0000139: Golgi membrane	3.22E-02
43	GO:0000145: exocyst	3.38E-02
44	GO:0005794: Golgi apparatus	3.53E-02