co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0030644: cellular chloride ion homeostasis	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	8.70E-16
7	GO:0018298: protein-chromophore linkage	7.89E-15
8	GO:0010114: response to red light	3.45E-10
9	GO:0009645: response to low light intensity stimulus	2.22E-09
10	GO:0010218: response to far red light	4.65E-09
11	GO:0009637: response to blue light	7.35E-09
12	GO:0009644: response to high light intensity	2.18E-08
13	GO:0015979: photosynthesis	4.76E-07
14	GO:0009769: photosynthesis, light harvesting in photosystem II	5.02E-07
15	GO:0007623: circadian rhythm	7.60E-07
16	GO:0009416: response to light stimulus	7.76E-06
17	GO:0006355: regulation of transcription, DNA-templated	2.99E-05
18	GO:0080167: response to karrikin	6.73E-05
19	GO:0006351: transcription, DNA-templated	8.05E-05
20	GO:0015812: gamma-aminobutyric acid transport	1.18E-04
21	GO:0032958: inositol phosphate biosynthetic process	1.18E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	1.18E-04
23	GO:0009409: response to cold	1.45E-04
24	GO:0000160: phosphorelay signal transduction system	1.67E-04
25	GO:0010119: regulation of stomatal movement	1.91E-04
26	GO:0051170: nuclear import	2.73E-04
27	GO:1902884: positive regulation of response to oxidative stress	2.73E-04
28	GO:0010155: regulation of proton transport	2.73E-04
29	GO:0006883: cellular sodium ion homeostasis	2.73E-04
30	GO:0042542: response to hydrogen peroxide	2.89E-04
31	GO:0006598: polyamine catabolic process	4.52E-04
32	GO:1901562: response to paraquat	4.52E-04
33	GO:0090630: activation of GTPase activity	4.52E-04
34	GO:1902448: positive regulation of shade avoidance	4.52E-04
35	GO:0003333: amino acid transmembrane transport	4.85E-04
36	GO:0048511: rhythmic process	4.85E-04
37	GO:0010017: red or far-red light signaling pathway	5.29E-04
38	GO:0044211: CTP salvage	6.47E-04
39	GO:0030100: regulation of endocytosis	6.47E-04
40	GO:0031936: negative regulation of chromatin silencing	6.47E-04
41	GO:0006020: inositol metabolic process	6.47E-04
42	GO:1901000: regulation of response to salt stress	6.47E-04
43	GO:0010601: positive regulation of auxin biosynthetic process	6.47E-04
44	GO:0010600: regulation of auxin biosynthetic process	8.60E-04
45	GO:1901002: positive regulation of response to salt stress	8.60E-04
46	GO:0015846: polyamine transport	8.60E-04
47	GO:0030104: water homeostasis	8.60E-04
48	GO:0044206: UMP salvage	8.60E-04
49	GO:0000003: reproduction	8.60E-04
50	GO:0009765: photosynthesis, light harvesting	8.60E-04
51	GO:2000306: positive regulation of photomorphogenesis	8.60E-04
52	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	1.08E-03
53	GO:0043097: pyrimidine nucleoside salvage	1.08E-03
54	GO:0009904: chloroplast accumulation movement	1.08E-03
55	GO:0006461: protein complex assembly	1.08E-03
56	GO:0016123: xanthophyll biosynthetic process	1.08E-03
57	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.08E-03
58	GO:0045962: positive regulation of development, heterochronic	1.33E-03
59	GO:0006206: pyrimidine nucleobase metabolic process	1.33E-03
60	GO:0009635: response to herbicide	1.33E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.59E-03
62	GO:0033962: cytoplasmic mRNA processing body assembly	1.59E-03
63	GO:0009903: chloroplast avoidance movement	1.59E-03
64	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.59E-03
65	GO:0071470: cellular response to osmotic stress	1.59E-03
66	GO:0009737: response to abscisic acid	1.63E-03
67	GO:0009817: defense response to fungus, incompatible interaction	1.77E-03
68	GO:0048437: floral organ development	1.87E-03
69	GO:0010196: nonphotochemical quenching	1.87E-03
70	GO:0080111: DNA demethylation	1.87E-03
71	GO:0010161: red light signaling pathway	1.87E-03
72	GO:1900056: negative regulation of leaf senescence	1.87E-03
73	GO:0010928: regulation of auxin mediated signaling pathway	2.16E-03
74	GO:0042255: ribosome assembly	2.16E-03
75	GO:0009704: de-etiolation	2.16E-03
76	GO:0009658: chloroplast organization	2.39E-03
77	GO:0035556: intracellular signal transduction	2.44E-03
78	GO:0009827: plant-type cell wall modification	2.46E-03
79	GO:0010099: regulation of photomorphogenesis	2.46E-03
80	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.46E-03
81	GO:0090333: regulation of stomatal closure	2.78E-03
82	GO:0009640: photomorphogenesis	2.86E-03
83	GO:0008643: carbohydrate transport	3.09E-03
84	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.12E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	3.12E-03
86	GO:0008356: asymmetric cell division	3.12E-03
87	GO:0009638: phototropism	3.12E-03
88	GO:0000387: spliceosomal snRNP assembly	3.12E-03
89	GO:0010162: seed dormancy process	3.46E-03
90	GO:0009970: cellular response to sulfate starvation	3.46E-03
91	GO:0055062: phosphate ion homeostasis	3.46E-03
92	GO:0006995: cellular response to nitrogen starvation	3.46E-03
93	GO:0009688: abscisic acid biosynthetic process	3.46E-03
94	GO:0009641: shade avoidance	3.46E-03
95	GO:0006949: syncytium formation	3.46E-03
96	GO:0044550: secondary metabolite biosynthetic process	3.49E-03
97	GO:0046856: phosphatidylinositol dephosphorylation	3.82E-03
98	GO:0009585: red, far-red light phototransduction	3.84E-03
99	GO:0016925: protein sumoylation	4.19E-03
100	GO:0009785: blue light signaling pathway	4.57E-03
101	GO:0050826: response to freezing	4.57E-03
102	GO:0018107: peptidyl-threonine phosphorylation	4.57E-03
103	GO:0009718: anthocyanin-containing compound biosynthetic process	4.57E-03
104	GO:0010207: photosystem II assembly	4.97E-03
105	GO:0009266: response to temperature stimulus	4.97E-03
106	GO:0009408: response to heat	5.14E-03
107	GO:0019853: L-ascorbic acid biosynthetic process	5.37E-03
108	GO:0090351: seedling development	5.37E-03
109	GO:0007165: signal transduction	5.68E-03
110	GO:0006636: unsaturated fatty acid biosynthetic process	5.79E-03
111	GO:0010431: seed maturation	7.11E-03
112	GO:0009269: response to desiccation	7.11E-03
113	GO:0071215: cellular response to abscisic acid stimulus	8.05E-03
114	GO:0010227: floral organ abscission	8.05E-03
115	GO:0006012: galactose metabolic process	8.05E-03
116	GO:0045492: xylan biosynthetic process	8.53E-03
117	GO:0009735: response to cytokinin	9.51E-03
118	GO:0008360: regulation of cell shape	1.00E-02
119	GO:0010182: sugar mediated signaling pathway	1.00E-02
120	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.06E-02
121	GO:0006814: sodium ion transport	1.06E-02
122	GO:0042752: regulation of circadian rhythm	1.06E-02
123	GO:0006623: protein targeting to vacuole	1.11E-02
124	GO:0009556: microsporogenesis	1.11E-02
125	GO:0000302: response to reactive oxygen species	1.16E-02
126	GO:0055114: oxidation-reduction process	1.22E-02
127	GO:0032502: developmental process	1.22E-02
128	GO:0045893: positive regulation of transcription, DNA-templated	1.27E-02
129	GO:1901657: glycosyl compound metabolic process	1.28E-02
130	GO:0009828: plant-type cell wall loosening	1.33E-02
131	GO:0010286: heat acclimation	1.39E-02
132	GO:0055085: transmembrane transport	1.44E-02
133	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.57E-02
134	GO:0006970: response to osmotic stress	1.58E-02
135	GO:0015995: chlorophyll biosynthetic process	1.70E-02
136	GO:0048573: photoperiodism, flowering	1.70E-02
137	GO:0048481: plant ovule development	1.82E-02
138	GO:0009910: negative regulation of flower development	2.02E-02
139	GO:0045892: negative regulation of transcription, DNA-templated	2.21E-02
140	GO:0009414: response to water deprivation	2.52E-02
141	GO:0051707: response to other organism	2.59E-02
142	GO:0006629: lipid metabolic process	2.68E-02
143	GO:0009965: leaf morphogenesis	2.81E-02
144	GO:0006812: cation transport	3.04E-02
145	GO:0009664: plant-type cell wall organization	3.04E-02
146	GO:0042538: hyperosmotic salinity response	3.04E-02
147	GO:0009909: regulation of flower development	3.44E-02
148	GO:0016567: protein ubiquitination	3.45E-02
149	GO:0009651: response to salt stress	3.98E-02
150	GO:0009553: embryo sac development	4.02E-02
151	GO:0009624: response to nematode	4.11E-02
152	GO:0018105: peptidyl-serine phosphorylation	4.19E-02
153	GO:0009908: flower development	4.29E-02
154	GO:0009738: abscisic acid-activated signaling pathway	4.58E-02
155	GO:0009058: biosynthetic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0102985: Delta12-fatty-acid desaturase activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
8	GO:0016720: delta12-fatty acid dehydrogenase activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0031409: pigment binding	3.16E-16
12	GO:0016168: chlorophyll binding	2.72E-13
13	GO:0005515: protein binding	5.76E-06
14	GO:0003677: DNA binding	5.37E-05
15	GO:0046872: metal ion binding	8.92E-05
16	GO:0000828: inositol hexakisphosphate kinase activity	1.18E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	1.18E-04
18	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.18E-04
19	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.18E-04
20	GO:0000829: inositol heptakisphosphate kinase activity	1.18E-04
21	GO:0080079: cellobiose glucosidase activity	1.18E-04
22	GO:0036002: pre-mRNA binding	2.73E-04
23	GO:0015180: L-alanine transmembrane transporter activity	2.73E-04
24	GO:0004096: catalase activity	4.52E-04
25	GO:0046592: polyamine oxidase activity	4.52E-04
26	GO:0019948: SUMO activating enzyme activity	4.52E-04
27	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.07E-04
28	GO:0015181: arginine transmembrane transporter activity	6.47E-04
29	GO:0015203: polyamine transmembrane transporter activity	6.47E-04
30	GO:0009882: blue light photoreceptor activity	6.47E-04
31	GO:0015189: L-lysine transmembrane transporter activity	6.47E-04
32	GO:0005313: L-glutamate transmembrane transporter activity	8.60E-04
33	GO:0004845: uracil phosphoribosyltransferase activity	8.60E-04
34	GO:0000156: phosphorelay response regulator activity	1.08E-03
35	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.08E-03
36	GO:0002020: protease binding	1.08E-03
37	GO:0017070: U6 snRNA binding	1.08E-03
38	GO:0015297: antiporter activity	1.30E-03
39	GO:0004629: phospholipase C activity	1.33E-03
40	GO:0015562: efflux transmembrane transporter activity	1.33E-03
41	GO:0004849: uridine kinase activity	1.59E-03
42	GO:0004435: phosphatidylinositol phospholipase C activity	1.59E-03
43	GO:0004033: aldo-keto reductase (NADP) activity	2.16E-03
44	GO:0003843: 1,3-beta-D-glucan synthase activity	2.46E-03
45	GO:0071949: FAD binding	2.78E-03
46	GO:0000989: transcription factor activity, transcription factor binding	2.78E-03
47	GO:0015174: basic amino acid transmembrane transporter activity	3.12E-03
48	GO:0015293: symporter activity	3.21E-03
49	GO:0047372: acylglycerol lipase activity	3.82E-03
50	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.19E-03
51	GO:0004565: beta-galactosidase activity	4.57E-03
52	GO:0005315: inorganic phosphate transmembrane transporter activity	4.57E-03
53	GO:0000155: phosphorelay sensor kinase activity	4.57E-03
54	GO:0008131: primary amine oxidase activity	4.97E-03
55	GO:0003712: transcription cofactor activity	5.37E-03
56	GO:0008324: cation transmembrane transporter activity	6.66E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.01E-03
58	GO:0004707: MAP kinase activity	7.11E-03
59	GO:0008270: zinc ion binding	7.33E-03
60	GO:0003727: single-stranded RNA binding	8.53E-03
61	GO:0008514: organic anion transmembrane transporter activity	8.53E-03
62	GO:0005351: sugar:proton symporter activity	9.21E-03
63	GO:0030276: clathrin binding	1.00E-02
64	GO:0010181: FMN binding	1.06E-02
65	GO:0016853: isomerase activity	1.06E-02
66	GO:0003729: mRNA binding	1.20E-02
67	GO:0020037: heme binding	1.31E-02
68	GO:0102483: scopolin beta-glucosidase activity	1.70E-02
69	GO:0004497: monooxygenase activity	1.82E-02
70	GO:0005096: GTPase activator activity	1.89E-02
71	GO:0061630: ubiquitin protein ligase activity	1.91E-02
72	GO:0050897: cobalt ion binding	2.02E-02
73	GO:0008422: beta-glucosidase activity	2.30E-02
74	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.35E-02
75	GO:0042393: histone binding	2.37E-02
76	GO:0005506: iron ion binding	2.55E-02
77	GO:0005198: structural molecule activity	2.81E-02
78	GO:0015171: amino acid transmembrane transporter activity	3.44E-02
79	GO:0031625: ubiquitin protein ligase binding	3.44E-02
80	GO:0045735: nutrient reservoir activity	3.60E-02
81	GO:0016874: ligase activity	3.94E-02
82	GO:0022857: transmembrane transporter activity	3.94E-02
83	GO:0004672: protein kinase activity	4.18E-02
84	GO:0019843: rRNA binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	2.08E-14
2	GO:0030076: light-harvesting complex	4.14E-14
3	GO:0010287: plastoglobule	4.60E-12
4	GO:0009579: thylakoid	5.23E-09
5	GO:0009523: photosystem II	2.43E-08
6	GO:0009534: chloroplast thylakoid	8.86E-08
7	GO:0009941: chloroplast envelope	1.71E-07
8	GO:0009535: chloroplast thylakoid membrane	2.76E-07
9	GO:0009517: PSII associated light-harvesting complex II	1.18E-05
10	GO:0009898: cytoplasmic side of plasma membrane	1.18E-05
11	GO:0042651: thylakoid membrane	1.65E-05
12	GO:0016021: integral component of membrane	6.55E-05
13	GO:0009783: photosystem II antenna complex	1.18E-04
14	GO:0016020: membrane	1.81E-04
15	GO:0071007: U2-type catalytic step 2 spliceosome	2.73E-04
16	GO:0071006: U2-type catalytic step 1 spliceosome	6.47E-04
17	GO:0032586: protein storage vacuole membrane	8.60E-04
18	GO:0005798: Golgi-associated vesicle	1.33E-03
19	GO:0000974: Prp19 complex	1.33E-03
20	GO:0000932: P-body	1.36E-03
21	GO:0009986: cell surface	1.87E-03
22	GO:0009533: chloroplast stromal thylakoid	1.87E-03
23	GO:0000148: 1,3-beta-D-glucan synthase complex	2.46E-03
24	GO:0000326: protein storage vacuole	2.46E-03
25	GO:0031090: organelle membrane	2.78E-03
26	GO:0010494: cytoplasmic stress granule	2.78E-03
27	GO:0005884: actin filament	3.82E-03
28	GO:0005618: cell wall	5.55E-03
29	GO:0005769: early endosome	5.79E-03
30	GO:0009507: chloroplast	7.48E-03
31	GO:0030136: clathrin-coated vesicle	9.02E-03
32	GO:0009505: plant-type cell wall	9.22E-03
33	GO:0005773: vacuole	9.81E-03
34	GO:0005770: late endosome	1.00E-02
35	GO:0000151: ubiquitin ligase complex	1.82E-02
36	GO:0031969: chloroplast membrane	1.82E-02
37	GO:0005802: trans-Golgi network	1.94E-02
38	GO:0031966: mitochondrial membrane	3.04E-02
39	GO:0005887: integral component of plasma membrane	3.64E-02
40	GO:0016607: nuclear speck	3.68E-02
41	GO:0009706: chloroplast inner membrane	4.11E-02
42	GO:0005774: vacuolar membrane	4.16E-02
43	GO:0022626: cytosolic ribosome	4.54E-02
44	GO:0005654: nucleoplasm	4.73E-02
45	GO:0005623: cell	4.91E-02