GO Enrichment Analysis of Co-expressed Genes with
AT4G28750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0007172: signal complex assembly | 0.00E+00 |
| 3 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 1.70E-12 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 2.63E-08 |
| 6 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.91E-08 |
| 7 | GO:0019684: photosynthesis, light reaction | 1.38E-06 |
| 8 | GO:0018298: protein-chromophore linkage | 6.55E-05 |
| 9 | GO:0006824: cobalt ion transport | 7.58E-05 |
| 10 | GO:0000476: maturation of 4.5S rRNA | 7.58E-05 |
| 11 | GO:0000967: rRNA 5'-end processing | 7.58E-05 |
| 12 | GO:0010218: response to far red light | 7.58E-05 |
| 13 | GO:0033206: meiotic cytokinesis | 7.58E-05 |
| 14 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.54E-05 |
| 15 | GO:0010114: response to red light | 1.35E-04 |
| 16 | GO:0010207: photosystem II assembly | 1.55E-04 |
| 17 | GO:0016122: xanthophyll metabolic process | 1.81E-04 |
| 18 | GO:0034470: ncRNA processing | 1.81E-04 |
| 19 | GO:0034755: iron ion transmembrane transport | 1.81E-04 |
| 20 | GO:0035304: regulation of protein dephosphorylation | 1.81E-04 |
| 21 | GO:0016050: vesicle organization | 3.05E-04 |
| 22 | GO:0090391: granum assembly | 3.05E-04 |
| 23 | GO:0051604: protein maturation | 3.05E-04 |
| 24 | GO:0009765: photosynthesis, light harvesting | 5.87E-04 |
| 25 | GO:0030007: cellular potassium ion homeostasis | 5.87E-04 |
| 26 | GO:0042938: dipeptide transport | 5.87E-04 |
| 27 | GO:0010117: photoprotection | 7.44E-04 |
| 28 | GO:0010029: regulation of seed germination | 8.20E-04 |
| 29 | GO:0042549: photosystem II stabilization | 9.07E-04 |
| 30 | GO:0042176: regulation of protein catabolic process | 9.07E-04 |
| 31 | GO:0071470: cellular response to osmotic stress | 1.08E-03 |
| 32 | GO:2000033: regulation of seed dormancy process | 1.08E-03 |
| 33 | GO:0010189: vitamin E biosynthetic process | 1.08E-03 |
| 34 | GO:0009637: response to blue light | 1.25E-03 |
| 35 | GO:0010196: nonphotochemical quenching | 1.26E-03 |
| 36 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.26E-03 |
| 37 | GO:0050829: defense response to Gram-negative bacterium | 1.26E-03 |
| 38 | GO:0009645: response to low light intensity stimulus | 1.26E-03 |
| 39 | GO:0034599: cellular response to oxidative stress | 1.31E-03 |
| 40 | GO:0009642: response to light intensity | 1.46E-03 |
| 41 | GO:0006353: DNA-templated transcription, termination | 1.46E-03 |
| 42 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.46E-03 |
| 43 | GO:0009657: plastid organization | 1.66E-03 |
| 44 | GO:0010206: photosystem II repair | 1.87E-03 |
| 45 | GO:0034765: regulation of ion transmembrane transport | 1.87E-03 |
| 46 | GO:0006783: heme biosynthetic process | 1.87E-03 |
| 47 | GO:0010205: photoinhibition | 2.09E-03 |
| 48 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.09E-03 |
| 49 | GO:1900865: chloroplast RNA modification | 2.09E-03 |
| 50 | GO:0006949: syncytium formation | 2.32E-03 |
| 51 | GO:0009688: abscisic acid biosynthetic process | 2.32E-03 |
| 52 | GO:0009773: photosynthetic electron transport in photosystem I | 2.56E-03 |
| 53 | GO:0043085: positive regulation of catalytic activity | 2.56E-03 |
| 54 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.56E-03 |
| 55 | GO:0015706: nitrate transport | 2.80E-03 |
| 56 | GO:0006094: gluconeogenesis | 3.06E-03 |
| 57 | GO:0009767: photosynthetic electron transport chain | 3.06E-03 |
| 58 | GO:0009934: regulation of meristem structural organization | 3.32E-03 |
| 59 | GO:0090351: seedling development | 3.59E-03 |
| 60 | GO:0009863: salicylic acid mediated signaling pathway | 4.15E-03 |
| 61 | GO:0010187: negative regulation of seed germination | 4.15E-03 |
| 62 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.15E-03 |
| 63 | GO:0007017: microtubule-based process | 4.43E-03 |
| 64 | GO:0051260: protein homooligomerization | 4.73E-03 |
| 65 | GO:0009269: response to desiccation | 4.73E-03 |
| 66 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.34E-03 |
| 67 | GO:0006662: glycerol ether metabolic process | 6.64E-03 |
| 68 | GO:0007018: microtubule-based movement | 6.99E-03 |
| 69 | GO:0010193: response to ozone | 7.69E-03 |
| 70 | GO:0032502: developmental process | 8.05E-03 |
| 71 | GO:1901657: glycosyl compound metabolic process | 8.42E-03 |
| 72 | GO:0009828: plant-type cell wall loosening | 8.79E-03 |
| 73 | GO:0071805: potassium ion transmembrane transport | 9.17E-03 |
| 74 | GO:0016311: dephosphorylation | 1.16E-02 |
| 75 | GO:0045454: cell redox homeostasis | 1.20E-02 |
| 76 | GO:0007568: aging | 1.33E-02 |
| 77 | GO:0010119: regulation of stomatal movement | 1.33E-02 |
| 78 | GO:0009867: jasmonic acid mediated signaling pathway | 1.42E-02 |
| 79 | GO:0016051: carbohydrate biosynthetic process | 1.42E-02 |
| 80 | GO:0006897: endocytosis | 1.60E-02 |
| 81 | GO:0009640: photomorphogenesis | 1.70E-02 |
| 82 | GO:0009644: response to high light intensity | 1.79E-02 |
| 83 | GO:0009664: plant-type cell wall organization | 1.99E-02 |
| 84 | GO:0042538: hyperosmotic salinity response | 1.99E-02 |
| 85 | GO:0006812: cation transport | 1.99E-02 |
| 86 | GO:0005975: carbohydrate metabolic process | 2.08E-02 |
| 87 | GO:0010224: response to UV-B | 2.15E-02 |
| 88 | GO:0006857: oligopeptide transport | 2.20E-02 |
| 89 | GO:0006417: regulation of translation | 2.25E-02 |
| 90 | GO:0006096: glycolytic process | 2.36E-02 |
| 91 | GO:0043086: negative regulation of catalytic activity | 2.36E-02 |
| 92 | GO:0009735: response to cytokinin | 2.41E-02 |
| 93 | GO:0009740: gibberellic acid mediated signaling pathway | 2.58E-02 |
| 94 | GO:0042545: cell wall modification | 2.64E-02 |
| 95 | GO:0006396: RNA processing | 2.75E-02 |
| 96 | GO:0045490: pectin catabolic process | 3.98E-02 |
| 97 | GO:0008380: RNA splicing | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 2 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 3 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 4 | GO:0031409: pigment binding | 4.25E-06 |
| 5 | GO:0016168: chlorophyll binding | 4.73E-05 |
| 6 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 7.58E-05 |
| 7 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 7.58E-05 |
| 8 | GO:0010242: oxygen evolving activity | 7.58E-05 |
| 9 | GO:0004853: uroporphyrinogen decarboxylase activity | 7.58E-05 |
| 10 | GO:0043621: protein self-association | 1.51E-04 |
| 11 | GO:0008266: poly(U) RNA binding | 1.55E-04 |
| 12 | GO:0016868: intramolecular transferase activity, phosphotransferases | 1.81E-04 |
| 13 | GO:0019172: glyoxalase III activity | 1.81E-04 |
| 14 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.05E-04 |
| 15 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 4.41E-04 |
| 16 | GO:0016851: magnesium chelatase activity | 4.41E-04 |
| 17 | GO:0042936: dipeptide transporter activity | 5.87E-04 |
| 18 | GO:0016846: carbon-sulfur lyase activity | 7.44E-04 |
| 19 | GO:0015271: outward rectifier potassium channel activity | 9.07E-04 |
| 20 | GO:0004332: fructose-bisphosphate aldolase activity | 9.07E-04 |
| 21 | GO:0004462: lactoylglutathione lyase activity | 9.07E-04 |
| 22 | GO:0005267: potassium channel activity | 1.66E-03 |
| 23 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.73E-03 |
| 24 | GO:0000989: transcription factor activity, transcription factor binding | 1.87E-03 |
| 25 | GO:0005381: iron ion transmembrane transporter activity | 2.09E-03 |
| 26 | GO:0008047: enzyme activator activity | 2.32E-03 |
| 27 | GO:0015020: glucuronosyltransferase activity | 2.32E-03 |
| 28 | GO:0008081: phosphoric diester hydrolase activity | 3.06E-03 |
| 29 | GO:0015035: protein disulfide oxidoreductase activity | 3.12E-03 |
| 30 | GO:0005216: ion channel activity | 4.43E-03 |
| 31 | GO:0033612: receptor serine/threonine kinase binding | 4.73E-03 |
| 32 | GO:0046910: pectinesterase inhibitor activity | 4.86E-03 |
| 33 | GO:0003727: single-stranded RNA binding | 5.66E-03 |
| 34 | GO:0047134: protein-disulfide reductase activity | 5.98E-03 |
| 35 | GO:0004791: thioredoxin-disulfide reductase activity | 6.99E-03 |
| 36 | GO:0048038: quinone binding | 7.69E-03 |
| 37 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.42E-03 |
| 38 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 9.17E-03 |
| 39 | GO:0005200: structural constituent of cytoskeleton | 9.17E-03 |
| 40 | GO:0008375: acetylglucosaminyltransferase activity | 1.07E-02 |
| 41 | GO:0005509: calcium ion binding | 1.11E-02 |
| 42 | GO:0102483: scopolin beta-glucosidase activity | 1.12E-02 |
| 43 | GO:0003993: acid phosphatase activity | 1.46E-02 |
| 44 | GO:0008422: beta-glucosidase activity | 1.51E-02 |
| 45 | GO:0005515: protein binding | 1.64E-02 |
| 46 | GO:0035091: phosphatidylinositol binding | 1.79E-02 |
| 47 | GO:0003777: microtubule motor activity | 2.25E-02 |
| 48 | GO:0045330: aspartyl esterase activity | 2.25E-02 |
| 49 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.42E-02 |
| 50 | GO:0030599: pectinesterase activity | 2.58E-02 |
| 51 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.22E-02 |
| 52 | GO:0004252: serine-type endopeptidase activity | 3.41E-02 |
| 53 | GO:0015297: antiporter activity | 3.85E-02 |
| 54 | GO:0008017: microtubule binding | 4.11E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.01E-23 |
| 3 | GO:0009507: chloroplast | 2.29E-23 |
| 4 | GO:0009534: chloroplast thylakoid | 6.33E-21 |
| 5 | GO:0009579: thylakoid | 1.24E-14 |
| 6 | GO:0009522: photosystem I | 3.54E-11 |
| 7 | GO:0009941: chloroplast envelope | 3.69E-10 |
| 8 | GO:0010287: plastoglobule | 8.34E-10 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.02E-09 |
| 10 | GO:0030095: chloroplast photosystem II | 2.45E-08 |
| 11 | GO:0031977: thylakoid lumen | 1.10E-07 |
| 12 | GO:0009570: chloroplast stroma | 2.94E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 3.92E-07 |
| 14 | GO:0009517: PSII associated light-harvesting complex II | 5.57E-06 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 6.09E-06 |
| 16 | GO:0009538: photosystem I reaction center | 3.68E-05 |
| 17 | GO:0009783: photosystem II antenna complex | 7.58E-05 |
| 18 | GO:0030076: light-harvesting complex | 1.75E-04 |
| 19 | GO:0030093: chloroplast photosystem I | 1.81E-04 |
| 20 | GO:0031969: chloroplast membrane | 2.03E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 3.05E-04 |
| 22 | GO:0042646: plastid nucleoid | 4.41E-04 |
| 23 | GO:0032585: multivesicular body membrane | 4.41E-04 |
| 24 | GO:0009523: photosystem II | 5.10E-04 |
| 25 | GO:0055035: plastid thylakoid membrane | 7.44E-04 |
| 26 | GO:0030904: retromer complex | 9.07E-04 |
| 27 | GO:0016363: nuclear matrix | 1.08E-03 |
| 28 | GO:0016020: membrane | 1.76E-03 |
| 29 | GO:0045298: tubulin complex | 1.87E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 3.03E-03 |
| 31 | GO:0042651: thylakoid membrane | 4.43E-03 |
| 32 | GO:0005871: kinesin complex | 5.98E-03 |
| 33 | GO:0016021: integral component of membrane | 6.70E-03 |
| 34 | GO:0071944: cell periphery | 8.42E-03 |
| 35 | GO:0005874: microtubule | 9.66E-03 |
| 36 | GO:0000325: plant-type vacuole | 1.33E-02 |
| 37 | GO:0005623: cell | 3.22E-02 |
| 38 | GO:0046658: anchored component of plasma membrane | 4.85E-02 |