co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010360: negative regulation of anion channel activity	0.00E+00
2	GO:0006884: cell volume homeostasis	0.00E+00
3	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
4	GO:0031990: mRNA export from nucleus in response to heat stress	0.00E+00
5	GO:0006593: ornithine catabolic process	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
8	GO:0034219: carbohydrate transmembrane transport	4.78E-06
9	GO:0009061: anaerobic respiration	5.73E-05
10	GO:0019544: arginine catabolic process to glutamate	1.00E-04
11	GO:0051245: negative regulation of cellular defense response	1.00E-04
12	GO:0006481: C-terminal protein methylation	1.00E-04
13	GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	1.00E-04
14	GO:1902361: mitochondrial pyruvate transmembrane transport	1.00E-04
15	GO:0034214: protein hexamerization	1.00E-04
16	GO:0043069: negative regulation of programmed cell death	1.30E-04
17	GO:0009266: response to temperature stimulus	2.31E-04
18	GO:0006850: mitochondrial pyruvate transport	2.36E-04
19	GO:0019441: tryptophan catabolic process to kynurenine	2.36E-04
20	GO:0097054: L-glutamate biosynthetic process	2.36E-04
21	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.36E-04
22	GO:0018022: peptidyl-lysine methylation	2.36E-04
23	GO:0015914: phospholipid transport	2.36E-04
24	GO:0006501: C-terminal protein lipidation	2.36E-04
25	GO:0045948: positive regulation of translational initiation	2.36E-04
26	GO:0034051: negative regulation of plant-type hypersensitive response	3.92E-04
27	GO:0010447: response to acidic pH	3.92E-04
28	GO:0048281: inflorescence morphogenesis	3.92E-04
29	GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	3.92E-04
30	GO:0051646: mitochondrion localization	3.92E-04
31	GO:0006612: protein targeting to membrane	5.64E-04
32	GO:0006537: glutamate biosynthetic process	5.64E-04
33	GO:0044804: nucleophagy	7.50E-04
34	GO:0009165: nucleotide biosynthetic process	7.50E-04
35	GO:0070534: protein K63-linked ubiquitination	7.50E-04
36	GO:0019676: ammonia assimilation cycle	7.50E-04
37	GO:0010363: regulation of plant-type hypersensitive response	7.50E-04
38	GO:0006464: cellular protein modification process	9.40E-04
39	GO:0000422: mitophagy	9.47E-04
40	GO:0000045: autophagosome assembly	1.16E-03
41	GO:0009117: nucleotide metabolic process	1.16E-03
42	GO:0009759: indole glucosinolate biosynthetic process	1.16E-03
43	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.16E-03
44	GO:0006561: proline biosynthetic process	1.16E-03
45	GO:0006301: postreplication repair	1.16E-03
46	GO:0009816: defense response to bacterium, incompatible interaction	1.17E-03
47	GO:0098655: cation transmembrane transport	1.38E-03
48	GO:0006821: chloride transport	1.62E-03
49	GO:0010038: response to metal ion	1.62E-03
50	GO:0010044: response to aluminum ion	1.62E-03
51	GO:0006605: protein targeting	1.87E-03
52	GO:2000070: regulation of response to water deprivation	1.87E-03
53	GO:0016559: peroxisome fission	1.87E-03
54	GO:0006367: transcription initiation from RNA polymerase II promoter	2.14E-03
55	GO:0006887: exocytosis	2.14E-03
56	GO:0009657: plastid organization	2.14E-03
57	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.41E-03
58	GO:0009651: response to salt stress	2.61E-03
59	GO:0000387: spliceosomal snRNP assembly	2.70E-03
60	GO:0030042: actin filament depolymerization	2.70E-03
61	GO:0019538: protein metabolic process	3.00E-03
62	GO:0048229: gametophyte development	3.31E-03
63	GO:0009682: induced systemic resistance	3.31E-03
64	GO:0052544: defense response by callose deposition in cell wall	3.31E-03
65	GO:0015770: sucrose transport	3.31E-03
66	GO:0000266: mitochondrial fission	3.63E-03
67	GO:0048367: shoot system development	3.79E-03
68	GO:0008152: metabolic process	4.44E-03
69	GO:0010039: response to iron ion	4.64E-03
70	GO:0070588: calcium ion transmembrane transport	4.64E-03
71	GO:0010053: root epidermal cell differentiation	4.64E-03
72	GO:0005985: sucrose metabolic process	4.64E-03
73	GO:0009116: nucleoside metabolic process	5.37E-03
74	GO:0009863: salicylic acid mediated signaling pathway	5.37E-03
75	GO:0006366: transcription from RNA polymerase II promoter	6.14E-03
76	GO:0015992: proton transport	6.14E-03
77	GO:0048278: vesicle docking	6.14E-03
78	GO:0030433: ubiquitin-dependent ERAD pathway	6.54E-03
79	GO:0007005: mitochondrion organization	6.54E-03
80	GO:0035428: hexose transmembrane transport	6.54E-03
81	GO:0009814: defense response, incompatible interaction	6.54E-03
82	GO:0009625: response to insect	6.94E-03
83	GO:0016117: carotenoid biosynthetic process	7.78E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.78E-03
85	GO:0000413: protein peptidyl-prolyl isomerization	8.21E-03
86	GO:0046323: glucose import	8.65E-03
87	GO:0061025: membrane fusion	9.10E-03
88	GO:0006914: autophagy	1.15E-02
89	GO:0006511: ubiquitin-dependent protein catabolic process	1.20E-02
90	GO:0006904: vesicle docking involved in exocytosis	1.20E-02
91	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.35E-02
92	GO:0006906: vesicle fusion	1.40E-02
93	GO:0006950: response to stress	1.46E-02
94	GO:0010200: response to chitin	1.52E-02
95	GO:0045454: cell redox homeostasis	1.76E-02
96	GO:0009867: jasmonic acid mediated signaling pathway	1.86E-02
97	GO:0006979: response to oxidative stress	2.01E-02
98	GO:0032259: methylation	2.08E-02
99	GO:0006631: fatty acid metabolic process	2.10E-02
100	GO:0051707: response to other organism	2.22E-02
101	GO:0009644: response to high light intensity	2.35E-02
102	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.55E-02
103	GO:0009846: pollen germination	2.61E-02
104	GO:0042538: hyperosmotic salinity response	2.61E-02
105	GO:0006417: regulation of translation	2.95E-02
106	GO:0009626: plant-type hypersensitive response	3.24E-02
107	GO:0009624: response to nematode	3.53E-02
108	GO:0055114: oxidation-reduction process	3.60E-02
109	GO:0000398: mRNA splicing, via spliceosome	3.91E-02
110	GO:0009058: biosynthetic process	4.30E-02
111	GO:0006413: translational initiation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
4	GO:0048244: phytanoyl-CoA dioxygenase activity	0.00E+00
5	GO:0016041: glutamate synthase (ferredoxin) activity	1.00E-04
6	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	1.00E-04
7	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.00E-04
8	GO:0004061: arylformamidase activity	2.36E-04
9	GO:0004385: guanylate kinase activity	2.36E-04
10	GO:0050833: pyruvate transmembrane transporter activity	3.92E-04
11	GO:0004749: ribose phosphate diphosphokinase activity	5.64E-04
12	GO:0008276: protein methyltransferase activity	5.64E-04
13	GO:0019776: Atg8 ligase activity	7.50E-04
14	GO:0009916: alternative oxidase activity	7.50E-04
15	GO:0016279: protein-lysine N-methyltransferase activity	7.50E-04
16	GO:0031386: protein tag	9.47E-04
17	GO:0051538: 3 iron, 4 sulfur cluster binding	9.47E-04
18	GO:0036402: proteasome-activating ATPase activity	1.16E-03
19	GO:0031369: translation initiation factor binding	1.16E-03
20	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.38E-03
21	GO:0008506: sucrose:proton symporter activity	1.62E-03
22	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.62E-03
23	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.62E-03
24	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.87E-03
25	GO:0008171: O-methyltransferase activity	3.00E-03
26	GO:0005543: phospholipid binding	3.31E-03
27	GO:0008794: arsenate reductase (glutaredoxin) activity	3.31E-03
28	GO:0005388: calcium-transporting ATPase activity	3.95E-03
29	GO:0017025: TBP-class protein binding	4.64E-03
30	GO:0051119: sugar transmembrane transporter activity	4.64E-03
31	GO:0031418: L-ascorbic acid binding	5.37E-03
32	GO:0051087: chaperone binding	5.75E-03
33	GO:0005216: ion channel activity	5.75E-03
34	GO:0008408: 3'-5' exonuclease activity	6.14E-03
35	GO:0035251: UDP-glucosyltransferase activity	6.14E-03
36	GO:0015144: carbohydrate transmembrane transporter activity	6.60E-03
37	GO:0003727: single-stranded RNA binding	7.35E-03
38	GO:0005351: sugar:proton symporter activity	7.44E-03
39	GO:0004842: ubiquitin-protein transferase activity	7.72E-03
40	GO:0008194: UDP-glycosyltransferase activity	8.52E-03
41	GO:0008080: N-acetyltransferase activity	8.65E-03
42	GO:0005355: glucose transmembrane transporter activity	9.10E-03
43	GO:0008168: methyltransferase activity	1.14E-02
44	GO:0016597: amino acid binding	1.25E-02
45	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.51E-02
46	GO:0008236: serine-type peptidase activity	1.51E-02
47	GO:0061630: ubiquitin protein ligase activity	1.54E-02
48	GO:0003697: single-stranded DNA binding	1.86E-02
49	GO:0000149: SNARE binding	1.97E-02
50	GO:0004364: glutathione transferase activity	2.16E-02
51	GO:0005484: SNAP receptor activity	2.22E-02
52	GO:0005198: structural molecule activity	2.41E-02
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.48E-02
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.75E-02
55	GO:0008234: cysteine-type peptidase activity	2.95E-02
56	GO:0031625: ubiquitin protein ligase binding	2.95E-02
57	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.31E-02
58	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.31E-02
59	GO:0016887: ATPase activity	3.36E-02
60	GO:0003779: actin binding	3.46E-02
61	GO:0015035: protein disulfide oxidoreductase activity	3.61E-02
62	GO:0016758: transferase activity, transferring hexosyl groups	4.06E-02
63	GO:0030170: pyridoxal phosphate binding	4.46E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0034709: methylosome	0.00E+00
3	GO:0045335: phagocytic vesicle	0.00E+00
4	GO:0005783: endoplasmic reticulum	1.92E-05
5	GO:0031972: chloroplast intermembrane space	1.00E-04
6	GO:0034274: Atg12-Atg5-Atg16 complex	2.36E-04
7	GO:0000502: proteasome complex	3.42E-04
8	GO:0030139: endocytic vesicle	3.92E-04
9	GO:0034715: pICln-Sm protein complex	3.92E-04
10	GO:0070062: extracellular exosome	5.64E-04
11	GO:0032585: multivesicular body membrane	5.64E-04
12	GO:0031372: UBC13-MMS2 complex	7.50E-04
13	GO:0005778: peroxisomal membrane	9.96E-04
14	GO:0031597: cytosolic proteasome complex	1.38E-03
15	GO:0005829: cytosol	1.58E-03
16	GO:0031595: nuclear proteasome complex	1.62E-03
17	GO:0031305: integral component of mitochondrial inner membrane	1.87E-03
18	GO:0005886: plasma membrane	1.96E-03
19	GO:0034045: pre-autophagosomal structure membrane	2.14E-03
20	GO:0031901: early endosome membrane	2.41E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	2.70E-03
22	GO:0005665: DNA-directed RNA polymerase II, core complex	3.63E-03
23	GO:0005769: early endosome	5.00E-03
24	GO:0005623: cell	5.67E-03
25	GO:0070469: respiratory chain	5.75E-03
26	GO:0005741: mitochondrial outer membrane	6.14E-03
27	GO:0015629: actin cytoskeleton	6.94E-03
28	GO:0005789: endoplasmic reticulum membrane	8.98E-03
29	GO:0000145: exocyst	1.05E-02
30	GO:0000932: P-body	1.30E-02
31	GO:0005622: intracellular	1.68E-02
32	GO:0005737: cytoplasm	2.05E-02
33	GO:0031902: late endosome membrane	2.10E-02
34	GO:0031201: SNARE complex	2.10E-02
35	GO:0043231: intracellular membrane-bounded organelle	2.39E-02
36	GO:0005887: integral component of plasma membrane	2.94E-02
37	GO:0012505: endomembrane system	3.46E-02
38	GO:0005777: peroxisome	4.40E-02
39	GO:0005759: mitochondrial matrix	4.87E-02