co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
2	GO:0051555: flavonol biosynthetic process	6.70E-07
3	GO:0009225: nucleotide-sugar metabolic process	2.25E-06
4	GO:0030154: cell differentiation	6.13E-06
5	GO:0048573: photoperiodism, flowering	3.79E-05
6	GO:0016119: carotene metabolic process	6.26E-05
7	GO:0050691: regulation of defense response to virus by host	6.26E-05
8	GO:0033481: galacturonate biosynthetic process	6.26E-05
9	GO:0048438: floral whorl development	6.26E-05
10	GO:0009698: phenylpropanoid metabolic process	7.62E-05
11	GO:0071712: ER-associated misfolded protein catabolic process	1.52E-04
12	GO:0071497: cellular response to freezing	1.52E-04
13	GO:0010220: positive regulation of vernalization response	1.52E-04
14	GO:1900386: positive regulation of flavonol biosynthetic process	1.52E-04
15	GO:0009751: response to salicylic acid	2.48E-04
16	GO:0019419: sulfate reduction	2.57E-04
17	GO:0080168: abscisic acid transport	2.57E-04
18	GO:0010253: UDP-rhamnose biosynthetic process	2.57E-04
19	GO:0042823: pyridoxal phosphate biosynthetic process	3.73E-04
20	GO:0006882: cellular zinc ion homeostasis	3.73E-04
21	GO:0061088: regulation of sequestering of zinc ion	4.99E-04
22	GO:0070534: protein K63-linked ubiquitination	4.99E-04
23	GO:0016094: polyprenol biosynthetic process	6.32E-04
24	GO:0019408: dolichol biosynthetic process	6.32E-04
25	GO:0016123: xanthophyll biosynthetic process	6.32E-04
26	GO:0035556: intracellular signal transduction	6.77E-04
27	GO:0010315: auxin efflux	7.73E-04
28	GO:0000060: protein import into nucleus, translocation	7.73E-04
29	GO:0006301: postreplication repair	7.73E-04
30	GO:0009813: flavonoid biosynthetic process	8.28E-04
31	GO:0010077: maintenance of inflorescence meristem identity	9.20E-04
32	GO:0010076: maintenance of floral meristem identity	9.20E-04
33	GO:0009723: response to ethylene	9.97E-04
34	GO:0050829: defense response to Gram-negative bacterium	1.07E-03
35	GO:0010038: response to metal ion	1.07E-03
36	GO:0080167: response to karrikin	1.08E-03
37	GO:0010200: response to chitin	1.13E-03
38	GO:2000070: regulation of response to water deprivation	1.24E-03
39	GO:0010099: regulation of photomorphogenesis	1.41E-03
40	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.41E-03
41	GO:0031347: regulation of defense response	1.51E-03
42	GO:0000103: sulfate assimilation	1.96E-03
43	GO:0043069: negative regulation of programmed cell death	1.96E-03
44	GO:0009733: response to auxin	2.14E-03
45	GO:0010015: root morphogenesis	2.17E-03
46	GO:0000038: very long-chain fatty acid metabolic process	2.17E-03
47	GO:0000272: polysaccharide catabolic process	2.17E-03
48	GO:0016024: CDP-diacylglycerol biosynthetic process	2.37E-03
49	GO:0010582: floral meristem determinacy	2.37E-03
50	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.51E-03
51	GO:0006829: zinc II ion transport	2.58E-03
52	GO:0018107: peptidyl-threonine phosphorylation	2.58E-03
53	GO:0034605: cellular response to heat	2.80E-03
54	GO:0010143: cutin biosynthetic process	2.80E-03
55	GO:0002237: response to molecule of bacterial origin	2.80E-03
56	GO:0010540: basipetal auxin transport	2.80E-03
57	GO:0019853: L-ascorbic acid biosynthetic process	3.03E-03
58	GO:0019344: cysteine biosynthetic process	3.49E-03
59	GO:0006487: protein N-linked glycosylation	3.49E-03
60	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.24E-03
61	GO:0045893: positive regulation of transcription, DNA-templated	4.33E-03
62	GO:0009411: response to UV	4.50E-03
63	GO:0009739: response to gibberellin	4.54E-03
64	GO:0010584: pollen exine formation	4.76E-03
65	GO:0019722: calcium-mediated signaling	4.76E-03
66	GO:0042127: regulation of cell proliferation	4.76E-03
67	GO:0000271: polysaccharide biosynthetic process	5.31E-03
68	GO:0045489: pectin biosynthetic process	5.59E-03
69	GO:0009741: response to brassinosteroid	5.59E-03
70	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.46E-03
71	GO:0007267: cell-cell signaling	7.70E-03
72	GO:0009911: positive regulation of flower development	8.35E-03
73	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.68E-03
74	GO:0045454: cell redox homeostasis	9.31E-03
75	GO:0016311: dephosphorylation	9.70E-03
76	GO:0048527: lateral root development	1.11E-02
77	GO:0010119: regulation of stomatal movement	1.11E-02
78	GO:0010043: response to zinc ion	1.11E-02
79	GO:0016051: carbohydrate biosynthetic process	1.19E-02
80	GO:0009753: response to jasmonic acid	1.23E-02
81	GO:0006468: protein phosphorylation	1.25E-02
82	GO:0006855: drug transmembrane transport	1.58E-02
83	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.63E-02
84	GO:0000165: MAPK cascade	1.63E-02
85	GO:0009809: lignin biosynthetic process	1.75E-02
86	GO:0006486: protein glycosylation	1.75E-02
87	GO:0009585: red, far-red light phototransduction	1.75E-02
88	GO:0010224: response to UV-B	1.80E-02
89	GO:0009909: regulation of flower development	1.89E-02
90	GO:0009738: abscisic acid-activated signaling pathway	1.98E-02
91	GO:0042545: cell wall modification	2.21E-02
92	GO:0018105: peptidyl-serine phosphorylation	2.30E-02
93	GO:0009845: seed germination	2.80E-02
94	GO:0006633: fatty acid biosynthetic process	3.11E-02
95	GO:0007623: circadian rhythm	3.33E-02
96	GO:0045490: pectin catabolic process	3.33E-02
97	GO:0050832: defense response to fungus	3.50E-02
98	GO:0016567: protein ubiquitination	3.61E-02
99	GO:0009414: response to water deprivation	4.03E-02
100	GO:0042742: defense response to bacterium	4.13E-02
101	GO:0071555: cell wall organization	4.13E-02
102	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.30E-02
103	GO:0006970: response to osmotic stress	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
2	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
3	GO:0047213: anthocyanidin 3-O-glucosyltransferase activity	0.00E+00
4	GO:0080132: fatty acid alpha-hydroxylase activity	6.26E-05
5	GO:0090440: abscisic acid transporter activity	6.26E-05
6	GO:0010280: UDP-L-rhamnose synthase activity	1.52E-04
7	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.52E-04
8	GO:0009973: adenylyl-sulfate reductase activity	1.52E-04
9	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	1.52E-04
10	GO:0010291: carotene beta-ring hydroxylase activity	1.52E-04
11	GO:0044390: ubiquitin-like protein conjugating enzyme binding	1.52E-04
12	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.52E-04
13	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	1.52E-04
14	GO:0035251: UDP-glucosyltransferase activity	2.08E-04
15	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	3.73E-04
16	GO:0003824: catalytic activity	4.12E-04
17	GO:0043565: sequence-specific DNA binding	4.45E-04
18	GO:0045430: chalcone isomerase activity	4.99E-04
19	GO:0050378: UDP-glucuronate 4-epimerase activity	4.99E-04
20	GO:0004301: epoxide hydrolase activity	4.99E-04
21	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	4.99E-04
22	GO:0045547: dehydrodolichyl diphosphate synthase activity	6.32E-04
23	GO:0002094: polyprenyltransferase activity	6.32E-04
24	GO:0008429: phosphatidylethanolamine binding	7.73E-04
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	7.73E-04
26	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	7.73E-04
27	GO:0080046: quercetin 4'-O-glucosyltransferase activity	7.73E-04
28	GO:0016161: beta-amylase activity	9.20E-04
29	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.07E-03
30	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.07E-03
31	GO:0016621: cinnamoyl-CoA reductase activity	1.07E-03
32	GO:0015103: inorganic anion transmembrane transporter activity	1.07E-03
33	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.24E-03
34	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.35E-03
35	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.55E-03
36	GO:0016207: 4-coumarate-CoA ligase activity	1.58E-03
37	GO:0044212: transcription regulatory region DNA binding	1.80E-03
38	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.17E-03
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.17E-03
40	GO:0004842: ubiquitin-protein transferase activity	2.94E-03
41	GO:0016757: transferase activity, transferring glycosyl groups	2.99E-03
42	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.36E-03
43	GO:0005385: zinc ion transmembrane transporter activity	3.49E-03
44	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.24E-03
45	GO:0008194: UDP-glycosyltransferase activity	4.54E-03
46	GO:0001085: RNA polymerase II transcription factor binding	5.59E-03
47	GO:0046873: metal ion transmembrane transporter activity	5.59E-03
48	GO:0004674: protein serine/threonine kinase activity	5.71E-03
49	GO:0016853: isomerase activity	5.88E-03
50	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.07E-03
51	GO:0016791: phosphatase activity	7.38E-03
52	GO:0008375: acetylglucosaminyltransferase activity	9.01E-03
53	GO:0004806: triglyceride lipase activity	9.36E-03
54	GO:0015238: drug transmembrane transporter activity	1.04E-02
55	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.11E-02
56	GO:0016491: oxidoreductase activity	1.26E-02
57	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.31E-02
58	GO:0004672: protein kinase activity	1.45E-02
59	GO:0051287: NAD binding	1.63E-02
60	GO:0031625: ubiquitin protein ligase binding	1.89E-02
61	GO:0045330: aspartyl esterase activity	1.89E-02
62	GO:0016874: ligase activity	2.16E-02
63	GO:0030599: pectinesterase activity	2.16E-02
64	GO:0015035: protein disulfide oxidoreductase activity	2.30E-02
65	GO:0016746: transferase activity, transferring acyl groups	2.30E-02
66	GO:0016758: transferase activity, transferring hexosyl groups	2.60E-02
67	GO:0046910: pectinesterase inhibitor activity	3.17E-02
68	GO:0015297: antiporter activity	3.22E-02
69	GO:0008017: microtubule binding	3.44E-02
70	GO:0042802: identical protein binding	3.95E-02
71	GO:0005506: iron ion binding	4.07E-02
72	GO:0046982: protein heterodimerization activity	4.48E-02
73	GO:0016301: kinase activity	4.59E-02
74	GO:0003682: chromatin binding	4.72E-02
75	GO:0043531: ADP binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0036513: Derlin-1 retrotranslocation complex	3.73E-04
2	GO:0031372: UBC13-MMS2 complex	4.99E-04
3	GO:0005770: late endosome	5.59E-03
4	GO:0071944: cell periphery	7.07E-03
5	GO:0032580: Golgi cisterna membrane	7.38E-03
6	GO:0005667: transcription factor complex	9.01E-03
7	GO:0043231: intracellular membrane-bounded organelle	1.27E-02
8	GO:0031902: late endosome membrane	1.34E-02
9	GO:0005794: Golgi apparatus	1.93E-02
10	GO:0009543: chloroplast thylakoid lumen	2.65E-02
11	GO:0005802: trans-Golgi network	3.28E-02
12	GO:0005783: endoplasmic reticulum	3.35E-02
13	GO:0005615: extracellular space	3.60E-02
14	GO:0005774: vacuolar membrane	4.23E-02
15	GO:0016021: integral component of membrane	4.90E-02