GO Enrichment Analysis of Co-expressed Genes with
AT4G28200
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 2 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 3 | GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | 0.00E+00 |
| 4 | GO:0019484: beta-alanine catabolic process | 0.00E+00 |
| 5 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 6 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 7 | GO:0009448: gamma-aminobutyric acid metabolic process | 0.00E+00 |
| 8 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 9 | GO:1901535: regulation of DNA demethylation | 0.00E+00 |
| 10 | GO:0006105: succinate metabolic process | 0.00E+00 |
| 11 | GO:0019673: GDP-mannose metabolic process | 4.04E-05 |
| 12 | GO:0009865: pollen tube adhesion | 4.04E-05 |
| 13 | GO:0006540: glutamate decarboxylation to succinate | 4.04E-05 |
| 14 | GO:0006390: transcription from mitochondrial promoter | 4.04E-05 |
| 15 | GO:0009450: gamma-aminobutyric acid catabolic process | 4.04E-05 |
| 16 | GO:0006364: rRNA processing | 6.29E-05 |
| 17 | GO:0000162: tryptophan biosynthetic process | 8.11E-05 |
| 18 | GO:0010033: response to organic substance | 1.00E-04 |
| 19 | GO:0015804: neutral amino acid transport | 1.00E-04 |
| 20 | GO:0060149: negative regulation of posttranscriptional gene silencing | 1.00E-04 |
| 21 | GO:1902626: assembly of large subunit precursor of preribosome | 1.73E-04 |
| 22 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 1.73E-04 |
| 23 | GO:0042256: mature ribosome assembly | 1.73E-04 |
| 24 | GO:0006020: inositol metabolic process | 2.55E-04 |
| 25 | GO:0000460: maturation of 5.8S rRNA | 3.43E-04 |
| 26 | GO:0006536: glutamate metabolic process | 3.43E-04 |
| 27 | GO:0042273: ribosomal large subunit biogenesis | 3.43E-04 |
| 28 | GO:0006090: pyruvate metabolic process | 4.37E-04 |
| 29 | GO:0001731: formation of translation preinitiation complex | 5.37E-04 |
| 30 | GO:0016070: RNA metabolic process | 5.37E-04 |
| 31 | GO:0000470: maturation of LSU-rRNA | 5.37E-04 |
| 32 | GO:0009793: embryo development ending in seed dormancy | 5.53E-04 |
| 33 | GO:0000054: ribosomal subunit export from nucleus | 6.40E-04 |
| 34 | GO:0009423: chorismate biosynthetic process | 6.40E-04 |
| 35 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.40E-04 |
| 36 | GO:0009648: photoperiodism | 6.40E-04 |
| 37 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 7.49E-04 |
| 38 | GO:0044030: regulation of DNA methylation | 9.77E-04 |
| 39 | GO:0010093: specification of floral organ identity | 9.77E-04 |
| 40 | GO:0060321: acceptance of pollen | 9.77E-04 |
| 41 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.10E-03 |
| 42 | GO:0048367: shoot system development | 1.18E-03 |
| 43 | GO:0016573: histone acetylation | 1.22E-03 |
| 44 | GO:0006415: translational termination | 1.49E-03 |
| 45 | GO:0009073: aromatic amino acid family biosynthetic process | 1.49E-03 |
| 46 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 1.63E-03 |
| 47 | GO:0000266: mitochondrial fission | 1.63E-03 |
| 48 | GO:0006108: malate metabolic process | 1.77E-03 |
| 49 | GO:0010588: cotyledon vascular tissue pattern formation | 1.77E-03 |
| 50 | GO:0006446: regulation of translational initiation | 1.92E-03 |
| 51 | GO:0006541: glutamine metabolic process | 1.92E-03 |
| 52 | GO:0005985: sucrose metabolic process | 2.07E-03 |
| 53 | GO:0006413: translational initiation | 2.17E-03 |
| 54 | GO:0003333: amino acid transmembrane transport | 2.72E-03 |
| 55 | GO:0051260: protein homooligomerization | 2.72E-03 |
| 56 | GO:0016226: iron-sulfur cluster assembly | 2.89E-03 |
| 57 | GO:0071215: cellular response to abscisic acid stimulus | 3.06E-03 |
| 58 | GO:0000413: protein peptidyl-prolyl isomerization | 3.61E-03 |
| 59 | GO:0010154: fruit development | 3.80E-03 |
| 60 | GO:0010305: leaf vascular tissue pattern formation | 3.80E-03 |
| 61 | GO:0045489: pectin biosynthetic process | 3.80E-03 |
| 62 | GO:0009860: pollen tube growth | 3.84E-03 |
| 63 | GO:0010183: pollen tube guidance | 4.19E-03 |
| 64 | GO:0048366: leaf development | 4.20E-03 |
| 65 | GO:0000302: response to reactive oxygen species | 4.38E-03 |
| 66 | GO:0001666: response to hypoxia | 5.64E-03 |
| 67 | GO:0048481: plant ovule development | 6.77E-03 |
| 68 | GO:0048364: root development | 6.78E-03 |
| 69 | GO:0006397: mRNA processing | 6.78E-03 |
| 70 | GO:0010043: response to zinc ion | 7.49E-03 |
| 71 | GO:0046686: response to cadmium ion | 7.55E-03 |
| 72 | GO:0006865: amino acid transport | 7.74E-03 |
| 73 | GO:0006839: mitochondrial transport | 8.75E-03 |
| 74 | GO:0009553: embryo sac development | 1.48E-02 |
| 75 | GO:0006457: protein folding | 1.50E-02 |
| 76 | GO:0009790: embryo development | 1.97E-02 |
| 77 | GO:0040008: regulation of growth | 2.15E-02 |
| 78 | GO:0009451: RNA modification | 2.26E-02 |
| 79 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.41E-02 |
| 80 | GO:0009617: response to bacterium | 2.52E-02 |
| 81 | GO:0009826: unidimensional cell growth | 2.95E-02 |
| 82 | GO:0042254: ribosome biogenesis | 3.08E-02 |
| 83 | GO:0009723: response to ethylene | 3.37E-02 |
| 84 | GO:0006810: transport | 3.45E-02 |
| 85 | GO:0010200: response to chitin | 3.63E-02 |
| 86 | GO:0045892: negative regulation of transcription, DNA-templated | 4.07E-02 |
| 87 | GO:0006886: intracellular protein transport | 4.11E-02 |
| 88 | GO:0006869: lipid transport | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 2 | GO:0034387: 4-aminobutyrate:pyruvate transaminase activity | 0.00E+00 |
| 3 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 4 | GO:0003867: 4-aminobutyrate transaminase activity | 4.04E-05 |
| 5 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 4.04E-05 |
| 6 | GO:0008446: GDP-mannose 4,6-dehydratase activity | 4.04E-05 |
| 7 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.29E-05 |
| 8 | GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity | 1.00E-04 |
| 9 | GO:0015172: acidic amino acid transmembrane transporter activity | 1.00E-04 |
| 10 | GO:0070181: small ribosomal subunit rRNA binding | 1.73E-04 |
| 11 | GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity | 1.73E-04 |
| 12 | GO:0000166: nucleotide binding | 2.53E-04 |
| 13 | GO:0016149: translation release factor activity, codon specific | 2.55E-04 |
| 14 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 2.55E-04 |
| 15 | GO:0043023: ribosomal large subunit binding | 2.55E-04 |
| 16 | GO:0015175: neutral amino acid transmembrane transporter activity | 2.55E-04 |
| 17 | GO:0004470: malic enzyme activity | 3.43E-04 |
| 18 | GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | 3.43E-04 |
| 19 | GO:0004834: tryptophan synthase activity | 3.43E-04 |
| 20 | GO:0004737: pyruvate decarboxylase activity | 3.43E-04 |
| 21 | GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity | 3.43E-04 |
| 22 | GO:0008948: oxaloacetate decarboxylase activity | 4.37E-04 |
| 23 | GO:0035252: UDP-xylosyltransferase activity | 5.37E-04 |
| 24 | GO:0030976: thiamine pyrophosphate binding | 5.37E-04 |
| 25 | GO:0003730: mRNA 3'-UTR binding | 6.40E-04 |
| 26 | GO:0030515: snoRNA binding | 7.49E-04 |
| 27 | GO:0016831: carboxy-lyase activity | 7.49E-04 |
| 28 | GO:0043022: ribosome binding | 8.61E-04 |
| 29 | GO:0003724: RNA helicase activity | 9.77E-04 |
| 30 | GO:0015171: amino acid transmembrane transporter activity | 1.07E-03 |
| 31 | GO:0003747: translation release factor activity | 1.10E-03 |
| 32 | GO:0003729: mRNA binding | 1.37E-03 |
| 33 | GO:0001054: RNA polymerase I activity | 1.49E-03 |
| 34 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.77E-03 |
| 35 | GO:0051536: iron-sulfur cluster binding | 2.39E-03 |
| 36 | GO:0003743: translation initiation factor activity | 2.71E-03 |
| 37 | GO:0001085: RNA polymerase II transcription factor binding | 3.80E-03 |
| 38 | GO:0004004: ATP-dependent RNA helicase activity | 6.31E-03 |
| 39 | GO:0003676: nucleic acid binding | 6.41E-03 |
| 40 | GO:0050897: cobalt ion binding | 7.49E-03 |
| 41 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 7.49E-03 |
| 42 | GO:0051539: 4 iron, 4 sulfur cluster binding | 8.75E-03 |
| 43 | GO:0016887: ATPase activity | 1.01E-02 |
| 44 | GO:0015293: symporter activity | 1.03E-02 |
| 45 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.06E-02 |
| 46 | GO:0051287: NAD binding | 1.09E-02 |
| 47 | GO:0008026: ATP-dependent helicase activity | 1.57E-02 |
| 48 | GO:0003723: RNA binding | 1.68E-02 |
| 49 | GO:0030170: pyridoxal phosphate binding | 1.91E-02 |
| 50 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.94E-02 |
| 51 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.64E-02 |
| 52 | GO:0000287: magnesium ion binding | 2.99E-02 |
| 53 | GO:0003682: chromatin binding | 3.16E-02 |
| 54 | GO:0050660: flavin adenine dinucleotide binding | 3.37E-02 |
| 55 | GO:0042803: protein homodimerization activity | 4.16E-02 |
| 56 | GO:0004519: endonuclease activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0055087: Ski complex | 0.00E+00 |
| 2 | GO:0005829: cytosol | 6.09E-06 |
| 3 | GO:0030687: preribosome, large subunit precursor | 1.02E-05 |
| 4 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 4.04E-05 |
| 5 | GO:0032040: small-subunit processome | 4.67E-05 |
| 6 | GO:0005730: nucleolus | 3.13E-04 |
| 7 | GO:0016282: eukaryotic 43S preinitiation complex | 5.37E-04 |
| 8 | GO:0033290: eukaryotic 48S preinitiation complex | 6.40E-04 |
| 9 | GO:0005680: anaphase-promoting complex | 1.10E-03 |
| 10 | GO:0005736: DNA-directed RNA polymerase I complex | 1.10E-03 |
| 11 | GO:0005774: vacuolar membrane | 1.12E-03 |
| 12 | GO:0016604: nuclear body | 1.22E-03 |
| 13 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.91E-03 |
| 14 | GO:0005667: transcription factor complex | 6.09E-03 |
| 15 | GO:0016607: nuclear speck | 1.35E-02 |
| 16 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.60E-02 |
| 17 | GO:0005654: nucleoplasm | 1.74E-02 |
| 18 | GO:0005794: Golgi apparatus | 1.95E-02 |
| 19 | GO:0016020: membrane | 1.98E-02 |
| 20 | GO:0022627: cytosolic small ribosomal subunit | 2.72E-02 |
| 21 | GO:0046658: anchored component of plasma membrane | 2.72E-02 |
| 22 | GO:0009536: plastid | 2.88E-02 |
| 23 | GO:0031969: chloroplast membrane | 3.54E-02 |
| 24 | GO:0022625: cytosolic large ribosomal subunit | 3.67E-02 |
| 25 | GO:0009506: plasmodesma | 3.67E-02 |
| 26 | GO:0005743: mitochondrial inner membrane | 4.43E-02 |
| 27 | GO:0009570: chloroplast stroma | 4.59E-02 |