Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043269: regulation of ion transport0.00E+00
2GO:0019481: L-alanine catabolic process, by transamination0.00E+00
3GO:0033587: shikimate biosynthetic process0.00E+00
4GO:0006182: cGMP biosynthetic process0.00E+00
5GO:0071456: cellular response to hypoxia4.04E-12
6GO:0009617: response to bacterium2.84E-08
7GO:0010120: camalexin biosynthetic process3.08E-08
8GO:0009682: induced systemic resistance1.62E-07
9GO:0055114: oxidation-reduction process9.19E-07
10GO:0010150: leaf senescence5.43E-06
11GO:0050832: defense response to fungus1.08E-04
12GO:0009851: auxin biosynthetic process1.43E-04
13GO:0030091: protein repair1.51E-04
14GO:0009626: plant-type hypersensitive response1.79E-04
15GO:0009623: response to parasitic fungus1.88E-04
16GO:0051245: negative regulation of cellular defense response1.88E-04
17GO:0010941: regulation of cell death1.88E-04
18GO:0010726: positive regulation of hydrogen peroxide metabolic process1.88E-04
19GO:0009700: indole phytoalexin biosynthetic process1.88E-04
20GO:1901183: positive regulation of camalexin biosynthetic process1.88E-04
21GO:0010252: auxin homeostasis2.07E-04
22GO:0010112: regulation of systemic acquired resistance2.29E-04
23GO:0042742: defense response to bacterium3.55E-04
24GO:0052544: defense response by callose deposition in cell wall3.73E-04
25GO:0009817: defense response to fungus, incompatible interaction3.76E-04
26GO:0008219: cell death3.76E-04
27GO:0048826: cotyledon morphogenesis4.24E-04
28GO:0009727: detection of ethylene stimulus4.24E-04
29GO:0030187: melatonin biosynthetic process4.24E-04
30GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine4.24E-04
31GO:2000693: positive regulation of seed maturation4.24E-04
32GO:0000162: tryptophan biosynthetic process6.80E-04
33GO:0010338: leaf formation6.92E-04
34GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway6.92E-04
35GO:0071398: cellular response to fatty acid6.92E-04
36GO:0016998: cell wall macromolecule catabolic process9.07E-04
37GO:0046686: response to cadmium ion9.57E-04
38GO:0009399: nitrogen fixation9.86E-04
39GO:0006612: protein targeting to membrane9.86E-04
40GO:0010116: positive regulation of abscisic acid biosynthetic process9.86E-04
41GO:0048194: Golgi vesicle budding9.86E-04
42GO:0009809: lignin biosynthetic process1.02E-03
43GO:0010363: regulation of plant-type hypersensitive response1.31E-03
44GO:0010600: regulation of auxin biosynthetic process1.31E-03
45GO:0080142: regulation of salicylic acid biosynthetic process1.31E-03
46GO:0006542: glutamine biosynthetic process1.31E-03
47GO:0009620: response to fungus1.41E-03
48GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA1.66E-03
49GO:0000304: response to singlet oxygen1.66E-03
50GO:0009697: salicylic acid biosynthetic process1.66E-03
51GO:0009630: gravitropism1.92E-03
52GO:0010256: endomembrane system organization2.05E-03
53GO:0010358: leaf shaping2.05E-03
54GO:0009759: indole glucosinolate biosynthetic process2.05E-03
55GO:0006561: proline biosynthetic process2.05E-03
56GO:0010942: positive regulation of cell death2.05E-03
57GO:0016070: RNA metabolic process2.05E-03
58GO:0051607: defense response to virus2.44E-03
59GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.46E-03
60GO:0001666: response to hypoxia2.58E-03
61GO:0009627: systemic acquired resistance2.88E-03
62GO:1900056: negative regulation of leaf senescence2.90E-03
63GO:0070370: cellular heat acclimation2.90E-03
64GO:1902074: response to salt2.90E-03
65GO:0016559: peroxisome fission3.36E-03
66GO:0009061: anaerobic respiration3.36E-03
67GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.36E-03
68GO:0009407: toxin catabolic process3.71E-03
69GO:0007166: cell surface receptor signaling pathway3.74E-03
70GO:0010204: defense response signaling pathway, resistance gene-independent3.84E-03
71GO:0009808: lignin metabolic process3.84E-03
72GO:0009631: cold acclimation3.88E-03
73GO:0045087: innate immune response4.26E-03
74GO:0007338: single fertilization4.35E-03
75GO:0006098: pentose-phosphate shunt4.35E-03
76GO:0006468: protein phosphorylation4.81E-03
77GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.87E-03
78GO:0008202: steroid metabolic process4.87E-03
79GO:0051555: flavonol biosynthetic process5.42E-03
80GO:0009870: defense response signaling pathway, resistance gene-dependent5.42E-03
81GO:0006032: chitin catabolic process5.42E-03
82GO:0009688: abscisic acid biosynthetic process5.42E-03
83GO:0043069: negative regulation of programmed cell death5.42E-03
84GO:0051707: response to other organism5.48E-03
85GO:0006952: defense response5.63E-03
86GO:0009089: lysine biosynthetic process via diaminopimelate5.99E-03
87GO:0000272: polysaccharide catabolic process5.99E-03
88GO:0009636: response to toxic substance6.15E-03
89GO:0002213: defense response to insect6.58E-03
90GO:0071365: cellular response to auxin stimulus6.58E-03
91GO:0000266: mitochondrial fission6.58E-03
92GO:0042538: hyperosmotic salinity response6.88E-03
93GO:0010229: inflorescence development7.19E-03
94GO:0055046: microgametogenesis7.19E-03
95GO:0009718: anthocyanin-containing compound biosynthetic process7.19E-03
96GO:0080167: response to karrikin7.22E-03
97GO:0006813: potassium ion transport7.38E-03
98GO:0034605: cellular response to heat7.82E-03
99GO:0002237: response to molecule of bacterial origin7.82E-03
100GO:0007031: peroxisome organization8.47E-03
101GO:0042343: indole glucosinolate metabolic process8.47E-03
102GO:0071732: cellular response to nitric oxide8.47E-03
103GO:0010030: positive regulation of seed germination8.47E-03
104GO:0046854: phosphatidylinositol phosphorylation8.47E-03
105GO:0010053: root epidermal cell differentiation8.47E-03
106GO:0009863: salicylic acid mediated signaling pathway9.83E-03
107GO:0080147: root hair cell development9.83E-03
108GO:0005992: trehalose biosynthetic process9.83E-03
109GO:0006869: lipid transport1.02E-02
110GO:0032259: methylation1.12E-02
111GO:0048278: vesicle docking1.13E-02
112GO:0031408: oxylipin biosynthetic process1.13E-02
113GO:0035428: hexose transmembrane transport1.20E-02
114GO:0009814: defense response, incompatible interaction1.20E-02
115GO:0009693: ethylene biosynthetic process1.28E-02
116GO:0071369: cellular response to ethylene stimulus1.28E-02
117GO:0009625: response to insect1.28E-02
118GO:0010227: floral organ abscission1.28E-02
119GO:0010584: pollen exine formation1.35E-02
120GO:0009561: megagametogenesis1.35E-02
121GO:0042147: retrograde transport, endosome to Golgi1.43E-02
122GO:0070417: cellular response to cold1.43E-02
123GO:0042631: cellular response to water deprivation1.51E-02
124GO:0010051: xylem and phloem pattern formation1.51E-02
125GO:0006885: regulation of pH1.60E-02
126GO:0046323: glucose import1.60E-02
127GO:0048544: recognition of pollen1.68E-02
128GO:0061025: membrane fusion1.68E-02
129GO:0042752: regulation of circadian rhythm1.68E-02
130GO:0048825: cotyledon development1.77E-02
131GO:0002229: defense response to oomycetes1.85E-02
132GO:0010583: response to cyclopentenone1.94E-02
133GO:0071281: cellular response to iron ion2.03E-02
134GO:0009733: response to auxin2.11E-02
135GO:0009567: double fertilization forming a zygote and endosperm2.13E-02
136GO:0019760: glucosinolate metabolic process2.13E-02
137GO:0071805: potassium ion transmembrane transport2.22E-02
138GO:0009738: abscisic acid-activated signaling pathway2.35E-02
139GO:0009607: response to biotic stimulus2.51E-02
140GO:0009816: defense response to bacterium, incompatible interaction2.51E-02
141GO:0042128: nitrate assimilation2.61E-02
142GO:0006906: vesicle fusion2.61E-02
143GO:0006950: response to stress2.71E-02
144GO:0009813: flavonoid biosynthetic process3.02E-02
145GO:0010311: lateral root formation3.02E-02
146GO:0009867: jasmonic acid mediated signaling pathway3.45E-02
147GO:0006099: tricarboxylic acid cycle3.56E-02
148GO:0044550: secondary metabolite biosynthetic process3.80E-02
149GO:0006887: exocytosis3.89E-02
150GO:0042542: response to hydrogen peroxide4.01E-02
151GO:0009640: photomorphogenesis4.13E-02
152GO:0009926: auxin polar transport4.13E-02
153GO:0009846: pollen germination4.85E-02
154GO:0006812: cation transport4.85E-02
RankGO TermAdjusted P value
1GO:0033799: myricetin 3'-O-methyltransferase activity0.00E+00
2GO:0047763: caffeate O-methyltransferase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
5GO:0030755: quercetin 3-O-methyltransferase activity0.00E+00
6GO:0030744: luteolin O-methyltransferase activity0.00E+00
7GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.51E-06
8GO:0010279: indole-3-acetic acid amido synthetase activity2.66E-05
9GO:0050660: flavin adenine dinucleotide binding2.78E-05
10GO:0033743: peptide-methionine (R)-S-oxide reductase activity8.84E-05
11GO:0009055: electron carrier activity1.06E-04
12GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity1.88E-04
13GO:0033984: indole-3-glycerol-phosphate lyase activity1.88E-04
14GO:0017096: acetylserotonin O-methyltransferase activity1.88E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity1.88E-04
16GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity1.88E-04
17GO:0071949: FAD binding2.29E-04
18GO:0004713: protein tyrosine kinase activity3.21E-04
19GO:0005506: iron ion binding3.42E-04
20GO:0047372: acylglycerol lipase activity3.73E-04
21GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.20E-04
22GO:0032934: sterol binding4.24E-04
23GO:0004364: glutathione transferase activity6.68E-04
24GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.92E-04
25GO:0004383: guanylate cyclase activity6.92E-04
26GO:0016595: glutamate binding6.92E-04
27GO:0004049: anthranilate synthase activity6.92E-04
28GO:0031418: L-ascorbic acid binding7.52E-04
29GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity9.86E-04
30GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity9.86E-04
31GO:0000339: RNA cap binding9.86E-04
32GO:0045735: nutrient reservoir activity1.25E-03
33GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.31E-03
34GO:0004031: aldehyde oxidase activity1.31E-03
35GO:0050302: indole-3-acetaldehyde oxidase activity1.31E-03
36GO:0004834: tryptophan synthase activity1.31E-03
37GO:0004497: monooxygenase activity1.41E-03
38GO:0045431: flavonol synthase activity1.66E-03
39GO:0004356: glutamate-ammonia ligase activity1.66E-03
40GO:0051020: GTPase binding2.46E-03
41GO:0004012: phospholipid-translocating ATPase activity2.46E-03
42GO:0004602: glutathione peroxidase activity2.46E-03
43GO:0004656: procollagen-proline 4-dioxygenase activity2.46E-03
44GO:0008113: peptide-methionine (S)-S-oxide reductase activity2.46E-03
45GO:0019825: oxygen binding2.71E-03
46GO:0016301: kinase activity2.84E-03
47GO:0005085: guanyl-nucleotide exchange factor activity2.90E-03
48GO:0004620: phospholipase activity2.90E-03
49GO:0020037: heme binding3.36E-03
50GO:0004033: aldo-keto reductase (NADP) activity3.36E-03
51GO:0008142: oxysterol binding3.84E-03
52GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity4.35E-03
53GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity5.42E-03
54GO:0004568: chitinase activity5.42E-03
55GO:0008171: O-methyltransferase activity5.42E-03
56GO:0010329: auxin efflux transmembrane transporter activity7.19E-03
57GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.19E-03
58GO:0008061: chitin binding8.47E-03
59GO:0005524: ATP binding8.56E-03
60GO:0004672: protein kinase activity9.80E-03
61GO:0015079: potassium ion transmembrane transporter activity1.05E-02
62GO:0005516: calmodulin binding1.14E-02
63GO:0004674: protein serine/threonine kinase activity1.16E-02
64GO:0004499: N,N-dimethylaniline monooxygenase activity1.35E-02
65GO:0005451: monovalent cation:proton antiporter activity1.51E-02
66GO:0015299: solute:proton antiporter activity1.68E-02
67GO:0010181: FMN binding1.68E-02
68GO:0005355: glucose transmembrane transporter activity1.68E-02
69GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.70E-02
70GO:0015385: sodium:proton antiporter activity2.03E-02
71GO:0008483: transaminase activity2.22E-02
72GO:0042802: identical protein binding2.32E-02
73GO:0030247: polysaccharide binding2.71E-02
74GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.81E-02
75GO:0030145: manganese ion binding3.23E-02
76GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.45E-02
77GO:0030246: carbohydrate binding3.54E-02
78GO:0000149: SNARE binding3.67E-02
79GO:0004712: protein serine/threonine/tyrosine kinase activity3.67E-02
80GO:0050661: NADP binding3.78E-02
81GO:0005507: copper ion binding3.80E-02
82GO:0005484: SNAP receptor activity4.13E-02
83GO:0043621: protein self-association4.36E-02
84GO:0051537: 2 iron, 2 sulfur cluster binding4.36E-02
85GO:0004871: signal transducer activity4.38E-02
RankGO TermAdjusted P value
1GO:0005783: endoplasmic reticulum2.00E-06
2GO:0005886: plasma membrane1.07E-05
3GO:0016021: integral component of membrane7.49E-05
4GO:0045252: oxoglutarate dehydrogenase complex1.88E-04
5GO:0005950: anthranilate synthase complex4.24E-04
6GO:0009925: basal plasma membrane4.24E-04
7GO:0045177: apical part of cell9.86E-04
8GO:0032588: trans-Golgi network membrane2.05E-03
9GO:0005779: integral component of peroxisomal membrane3.84E-03
10GO:0000325: plant-type vacuole3.88E-03
11GO:0005829: cytosol4.41E-03
12GO:0009506: plasmodesma7.90E-03
13GO:0012505: endomembrane system1.02E-02
14GO:0005770: late endosome1.60E-02
15GO:0005778: peroxisomal membrane2.22E-02
16GO:0016020: membrane2.32E-02
17GO:0000932: P-body2.41E-02
18GO:0046658: anchored component of plasma membrane2.42E-02
19GO:0009707: chloroplast outer membrane2.91E-02
20GO:0005773: vacuole3.45E-02
21GO:0031201: SNARE complex3.89E-02
Gene type



Gene DE type