co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0010027: thylakoid membrane organization	1.26E-06
7	GO:0015995: chlorophyll biosynthetic process	1.95E-06
8	GO:0010196: nonphotochemical quenching	3.00E-06
9	GO:0090391: granum assembly	9.82E-06
10	GO:0015979: photosynthesis	1.39E-05
11	GO:0010236: plastoquinone biosynthetic process	6.46E-05
12	GO:0009735: response to cytokinin	1.19E-04
13	GO:0009451: RNA modification	1.50E-04
14	GO:0006869: lipid transport	1.57E-04
15	GO:0042335: cuticle development	1.71E-04
16	GO:0009772: photosynthetic electron transport in photosystem II	1.72E-04
17	GO:0016042: lipid catabolic process	1.92E-04
18	GO:0043489: RNA stabilization	2.41E-04
19	GO:0042759: long-chain fatty acid biosynthetic process	2.41E-04
20	GO:0042371: vitamin K biosynthetic process	2.41E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	2.41E-04
22	GO:0032544: plastid translation	2.70E-04
23	GO:0042254: ribosome biogenesis	3.49E-04
24	GO:0009773: photosynthetic electron transport in photosystem I	5.25E-04
25	GO:0001736: establishment of planar polarity	5.34E-04
26	GO:0006412: translation	6.24E-04
27	GO:0010143: cutin biosynthetic process	7.67E-04
28	GO:0006013: mannose metabolic process	8.68E-04
29	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.68E-04
30	GO:0006518: peptide metabolic process	8.68E-04
31	GO:0010025: wax biosynthetic process	9.50E-04
32	GO:0010088: phloem development	1.24E-03
33	GO:0009650: UV protection	1.24E-03
34	GO:1901332: negative regulation of lateral root development	1.24E-03
35	GO:2001141: regulation of RNA biosynthetic process	1.24E-03
36	GO:0010239: chloroplast mRNA processing	1.24E-03
37	GO:0009306: protein secretion	1.63E-03
38	GO:0045727: positive regulation of translation	1.65E-03
39	GO:0015994: chlorophyll metabolic process	1.65E-03
40	GO:0000413: protein peptidyl-prolyl isomerization	1.91E-03
41	GO:0048359: mucilage metabolic process involved in seed coat development	2.11E-03
42	GO:0006564: L-serine biosynthetic process	2.11E-03
43	GO:0045038: protein import into chloroplast thylakoid membrane	2.11E-03
44	GO:0042549: photosystem II stabilization	2.60E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.60E-03
46	GO:1901259: chloroplast rRNA processing	3.12E-03
47	GO:0042372: phylloquinone biosynthetic process	3.12E-03
48	GO:0048280: vesicle fusion with Golgi apparatus	3.12E-03
49	GO:0010189: vitamin E biosynthetic process	3.12E-03
50	GO:0010019: chloroplast-nucleus signaling pathway	3.12E-03
51	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.68E-03
52	GO:0009395: phospholipid catabolic process	3.68E-03
53	GO:0009627: systemic acquired resistance	4.08E-03
54	GO:0006353: DNA-templated transcription, termination	4.27E-03
55	GO:0006605: protein targeting	4.27E-03
56	GO:0048564: photosystem I assembly	4.27E-03
57	GO:0045292: mRNA cis splicing, via spliceosome	4.27E-03
58	GO:0071482: cellular response to light stimulus	4.89E-03
59	GO:0010311: lateral root formation	5.01E-03
60	GO:0009631: cold acclimation	5.51E-03
61	GO:0000373: Group II intron splicing	5.54E-03
62	GO:0015780: nucleotide-sugar transport	5.54E-03
63	GO:0009637: response to blue light	6.04E-03
64	GO:1900865: chloroplast RNA modification	6.21E-03
65	GO:0034599: cellular response to oxidative stress	6.32E-03
66	GO:0006896: Golgi to vacuole transport	6.92E-03
67	GO:0048829: root cap development	6.92E-03
68	GO:0043085: positive regulation of catalytic activity	7.65E-03
69	GO:0006352: DNA-templated transcription, initiation	7.65E-03
70	GO:0048765: root hair cell differentiation	7.65E-03
71	GO:0010114: response to red light	7.79E-03
72	GO:0016024: CDP-diacylglycerol biosynthetic process	8.41E-03
73	GO:0009658: chloroplast organization	8.61E-03
74	GO:0010102: lateral root morphogenesis	9.20E-03
75	GO:0006006: glucose metabolic process	9.20E-03
76	GO:0019253: reductive pentose-phosphate cycle	1.00E-02
77	GO:0010207: photosystem II assembly	1.00E-02
78	GO:0071732: cellular response to nitric oxide	1.09E-02
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-02
80	GO:0000027: ribosomal large subunit assembly	1.26E-02
81	GO:0051017: actin filament bundle assembly	1.26E-02
82	GO:0007017: microtubule-based process	1.35E-02
83	GO:0009768: photosynthesis, light harvesting in photosystem I	1.35E-02
84	GO:0019953: sexual reproduction	1.35E-02
85	GO:0003333: amino acid transmembrane transport	1.45E-02
86	GO:0016226: iron-sulfur cluster assembly	1.54E-02
87	GO:0030245: cellulose catabolic process	1.54E-02
88	GO:0009411: response to UV	1.64E-02
89	GO:0071369: cellular response to ethylene stimulus	1.64E-02
90	GO:0019722: calcium-mediated signaling	1.74E-02
91	GO:0042147: retrograde transport, endosome to Golgi	1.84E-02
92	GO:0009958: positive gravitropism	2.05E-02
93	GO:0006662: glycerol ether metabolic process	2.05E-02
94	GO:0042744: hydrogen peroxide catabolic process	2.14E-02
95	GO:0015986: ATP synthesis coupled proton transport	2.16E-02
96	GO:0006623: protein targeting to vacuole	2.27E-02
97	GO:0080156: mitochondrial mRNA modification	2.38E-02
98	GO:0000302: response to reactive oxygen species	2.38E-02
99	GO:0006891: intra-Golgi vesicle-mediated transport	2.38E-02
100	GO:0071281: cellular response to iron ion	2.62E-02
101	GO:0007267: cell-cell signaling	2.85E-02
102	GO:0006888: ER to Golgi vesicle-mediated transport	3.48E-02
103	GO:0018298: protein-chromophore linkage	3.75E-02
104	GO:0006811: ion transport	4.01E-02
105	GO:0010218: response to far red light	4.01E-02
106	GO:0006865: amino acid transport	4.29E-02
107	GO:0045087: innate immune response	4.43E-02
108	GO:0009409: response to cold	4.64E-02
109	GO:0030001: metal ion transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0005048: signal sequence binding	0.00E+00
7	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
8	GO:0019843: rRNA binding	6.13E-10
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.44E-08
10	GO:0016851: magnesium chelatase activity	8.19E-08
11	GO:0016788: hydrolase activity, acting on ester bonds	3.48E-07
12	GO:0005528: FK506 binding	1.98E-06
13	GO:0008266: poly(U) RNA binding	4.06E-05
14	GO:0003735: structural constituent of ribosome	9.41E-05
15	GO:0052689: carboxylic ester hydrolase activity	1.05E-04
16	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.30E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.41E-04
18	GO:0003867: 4-aminobutyrate transaminase activity	2.41E-04
19	GO:0005080: protein kinase C binding	2.41E-04
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.41E-04
21	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.41E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.34E-04
23	GO:0016630: protochlorophyllide reductase activity	5.34E-04
24	GO:0047746: chlorophyllase activity	5.34E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	5.34E-04
26	GO:0050734: hydroxycinnamoyltransferase activity	8.68E-04
27	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.68E-04
28	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.68E-04
29	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.68E-04
30	GO:0004519: endonuclease activity	1.15E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	1.24E-03
32	GO:0016987: sigma factor activity	1.65E-03
33	GO:0010328: auxin influx transmembrane transporter activity	1.65E-03
34	GO:0004659: prenyltransferase activity	1.65E-03
35	GO:0001053: plastid sigma factor activity	1.65E-03
36	GO:0010011: auxin binding	1.65E-03
37	GO:0008289: lipid binding	1.77E-03
38	GO:0004040: amidase activity	2.11E-03
39	GO:0003959: NADPH dehydrogenase activity	2.11E-03
40	GO:0004130: cytochrome-c peroxidase activity	2.60E-03
41	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.60E-03
42	GO:0016688: L-ascorbate peroxidase activity	2.60E-03
43	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.60E-03
44	GO:0004559: alpha-mannosidase activity	3.12E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	4.27E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	4.27E-03
47	GO:0008312: 7S RNA binding	4.27E-03
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-03
49	GO:0047617: acyl-CoA hydrolase activity	6.21E-03
50	GO:0008047: enzyme activator activity	6.92E-03
51	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.41E-03
52	GO:0043621: protein self-association	8.43E-03
53	GO:0004565: beta-galactosidase activity	9.20E-03
54	GO:0051287: NAD binding	9.44E-03
55	GO:0031409: pigment binding	1.17E-02
56	GO:0003723: RNA binding	1.21E-02
57	GO:0051536: iron-sulfur cluster binding	1.26E-02
58	GO:0008324: cation transmembrane transporter activity	1.35E-02
59	GO:0016746: transferase activity, transferring acyl groups	1.55E-02
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.59E-02
61	GO:0030570: pectate lyase activity	1.64E-02
62	GO:0008810: cellulase activity	1.64E-02
63	GO:0008514: organic anion transmembrane transporter activity	1.74E-02
64	GO:0047134: protein-disulfide reductase activity	1.84E-02
65	GO:0003729: mRNA binding	1.85E-02
66	GO:0008080: N-acetyltransferase activity	2.05E-02
67	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.05E-02
68	GO:0050662: coenzyme binding	2.16E-02
69	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-02
70	GO:0004518: nuclease activity	2.50E-02
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.62E-02
72	GO:0051015: actin filament binding	2.62E-02
73	GO:0016791: phosphatase activity	2.73E-02
74	GO:0005200: structural constituent of cytoskeleton	2.85E-02
75	GO:0016597: amino acid binding	2.98E-02
76	GO:0016168: chlorophyll binding	3.23E-02
77	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.30E-02
78	GO:0030247: polysaccharide binding	3.48E-02
79	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.61E-02
80	GO:0004222: metalloendopeptidase activity	4.01E-02
81	GO:0016491: oxidoreductase activity	4.46E-02
82	GO:0003993: acid phosphatase activity	4.57E-02
83	GO:0000149: SNARE binding	4.71E-02
84	GO:0050661: NADP binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	2.20E-28
4	GO:0009570: chloroplast stroma	6.21E-20
5	GO:0009534: chloroplast thylakoid	1.67E-17
6	GO:0009941: chloroplast envelope	1.80E-15
7	GO:0009535: chloroplast thylakoid membrane	1.47E-14
8	GO:0009579: thylakoid	2.75E-11
9	GO:0009543: chloroplast thylakoid lumen	6.13E-10
10	GO:0010007: magnesium chelatase complex	1.69E-08
11	GO:0031977: thylakoid lumen	3.12E-07
12	GO:0005840: ribosome	8.09E-06
13	GO:0046658: anchored component of plasma membrane	3.18E-05
14	GO:0048046: apoplast	5.28E-05
15	GO:0031225: anchored component of membrane	9.86E-05
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.41E-04
17	GO:0009547: plastid ribosome	2.41E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	5.34E-04
19	GO:0005886: plasma membrane	5.82E-04
20	GO:0000311: plastid large ribosomal subunit	6.01E-04
21	GO:0005618: cell wall	7.87E-04
22	GO:0015630: microtubule cytoskeleton	1.24E-03
23	GO:0009505: plant-type cell wall	1.29E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.60E-03
25	GO:0010287: plastoglobule	3.06E-03
26	GO:0009986: cell surface	3.68E-03
27	GO:0012507: ER to Golgi transport vesicle membrane	4.27E-03
28	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.89E-03
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.54E-03
30	GO:0030095: chloroplast photosystem II	1.00E-02
31	GO:0005874: microtubule	1.08E-02
32	GO:0030076: light-harvesting complex	1.09E-02
33	GO:0016020: membrane	1.19E-02
34	GO:0009706: chloroplast inner membrane	1.50E-02
35	GO:0015629: actin cytoskeleton	1.64E-02
36	GO:0043231: intracellular membrane-bounded organelle	2.10E-02
37	GO:0009522: photosystem I	2.16E-02
38	GO:0009523: photosystem II	2.27E-02
39	GO:0010319: stromule	2.85E-02
40	GO:0030529: intracellular ribonucleoprotein complex	3.10E-02
41	GO:0005576: extracellular region	3.55E-02
42	GO:0009536: plastid	4.03E-02
43	GO:0009506: plasmodesma	4.23E-02
44	GO:0005819: spindle	4.71E-02
45	GO:0031969: chloroplast membrane	4.96E-02