co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28025

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0006098: pentose-phosphate shunt	7.20E-06
3	GO:0006094: gluconeogenesis	1.86E-05
4	GO:0051775: response to redox state	1.97E-05
5	GO:0046836: glycolipid transport	1.36E-04
6	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.36E-04
7	GO:0006107: oxaloacetate metabolic process	1.36E-04
8	GO:0006734: NADH metabolic process	1.86E-04
9	GO:0016120: carotene biosynthetic process	2.40E-04
10	GO:0043097: pyrimidine nucleoside salvage	2.40E-04
11	GO:0006206: pyrimidine nucleobase metabolic process	2.97E-04
12	GO:0009854: oxidative photosynthetic carbon pathway	3.57E-04
13	GO:0009850: auxin metabolic process	4.84E-04
14	GO:0006096: glycolytic process	4.86E-04
15	GO:0071482: cellular response to light stimulus	5.50E-04
16	GO:0018119: peptidyl-cysteine S-nitrosylation	8.37E-04
17	GO:0006108: malate metabolic process	9.90E-04
18	GO:0019253: reductive pentose-phosphate cycle	1.07E-03
19	GO:0006636: unsaturated fatty acid biosynthetic process	1.23E-03
20	GO:0030433: ubiquitin-dependent ERAD pathway	1.59E-03
21	GO:0006817: phosphate ion transport	1.78E-03
22	GO:0042631: cellular response to water deprivation	1.98E-03
23	GO:0015986: ATP synthesis coupled proton transport	2.18E-03
24	GO:0016132: brassinosteroid biosynthetic process	2.40E-03
25	GO:0016126: sterol biosynthetic process	3.07E-03
26	GO:0042128: nitrate assimilation	3.31E-03
27	GO:0009735: response to cytokinin	4.31E-03
28	GO:0009853: photorespiration	4.32E-03
29	GO:0006099: tricarboxylic acid cycle	4.45E-03
30	GO:0000209: protein polyubiquitination	5.28E-03
31	GO:0006855: drug transmembrane transport	5.71E-03
32	GO:0006857: oligopeptide transport	6.61E-03
33	GO:0042742: defense response to bacterium	9.51E-03
34	GO:0009058: biosynthetic process	9.78E-03
35	GO:0055114: oxidation-reduction process	9.90E-03
36	GO:0046686: response to cadmium ion	1.49E-02
37	GO:0009826: unidimensional cell growth	1.57E-02
38	GO:0009658: chloroplast organization	1.61E-02
39	GO:0006970: response to osmotic stress	1.70E-02
40	GO:0080167: response to karrikin	1.87E-02
41	GO:0009737: response to abscisic acid	2.03E-02
42	GO:0045454: cell redox homeostasis	2.13E-02
43	GO:0008152: metabolic process	2.65E-02
44	GO:0035556: intracellular signal transduction	3.87E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
7	GO:0004332: fructose-bisphosphate aldolase activity	1.55E-06
8	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.97E-05
9	GO:0008746: NAD(P)+ transhydrogenase activity	1.97E-05
10	GO:0000248: C-5 sterol desaturase activity	1.97E-05
11	GO:0017089: glycolipid transporter activity	1.36E-04
12	GO:0051861: glycolipid binding	1.86E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.86E-04
14	GO:0016615: malate dehydrogenase activity	2.97E-04
15	GO:0015293: symporter activity	3.45E-04
16	GO:0004849: uridine kinase activity	3.57E-04
17	GO:0030060: L-malate dehydrogenase activity	3.57E-04
18	GO:0015078: hydrogen ion transmembrane transporter activity	5.50E-04
19	GO:0005315: inorganic phosphate transmembrane transporter activity	9.90E-04
20	GO:0008266: poly(U) RNA binding	1.07E-03
21	GO:0048038: quinone binding	2.40E-03
22	GO:0015238: drug transmembrane transporter activity	3.80E-03
23	GO:0051287: NAD binding	5.86E-03
24	GO:0031625: ubiquitin protein ligase binding	6.76E-03
25	GO:0080043: quercetin 3-O-glucosyltransferase activity	7.56E-03
26	GO:0080044: quercetin 7-O-glucosyltransferase activity	7.56E-03
27	GO:0015035: protein disulfide oxidoreductase activity	8.22E-03
28	GO:0016758: transferase activity, transferring hexosyl groups	9.24E-03
29	GO:0030170: pyridoxal phosphate binding	1.01E-02
30	GO:0005215: transporter activity	1.05E-02
31	GO:0015297: antiporter activity	1.14E-02
32	GO:0016491: oxidoreductase activity	1.25E-02
33	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
34	GO:0061630: ubiquitin protein ligase activity	1.94E-02
35	GO:0016787: hydrolase activity	2.05E-02
36	GO:0004871: signal transducer activity	2.20E-02
37	GO:0009055: electron carrier activity	2.60E-02

Rank	GO Term	Adjusted P value
1	GO:0009579: thylakoid	1.28E-07
2	GO:0009941: chloroplast envelope	4.68E-06
3	GO:0048046: apoplast	2.29E-04
4	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.97E-04
5	GO:0009507: chloroplast	5.53E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.19E-04
7	GO:0010287: plastoglobule	6.84E-04
8	GO:0009534: chloroplast thylakoid	7.26E-04
9	GO:0031969: chloroplast membrane	1.82E-03
10	GO:0010319: stromule	2.84E-03
11	GO:0009570: chloroplast stroma	3.22E-03
12	GO:0009535: chloroplast thylakoid membrane	3.78E-03
13	GO:0031977: thylakoid lumen	4.86E-03
14	GO:0009706: chloroplast inner membrane	8.05E-03
15	GO:0016021: integral component of membrane	1.14E-02
16	GO:0046658: anchored component of plasma membrane	1.44E-02
17	GO:0016020: membrane	2.56E-02
18	GO:0043231: intracellular membrane-bounded organelle	2.65E-02
19	GO:0022626: cytosolic ribosome	3.61E-02
20	GO:0005777: peroxisome	4.11E-02