GO Enrichment Analysis of Co-expressed Genes with
AT4G27440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 2 | GO:0046677: response to antibiotic | 0.00E+00 |
| 3 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 4 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
| 5 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 6 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
| 7 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 8 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 9 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 10 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.46E-21 |
| 11 | GO:0015979: photosynthesis | 3.20E-18 |
| 12 | GO:0018298: protein-chromophore linkage | 2.01E-13 |
| 13 | GO:0009645: response to low light intensity stimulus | 4.40E-11 |
| 14 | GO:0010114: response to red light | 1.06E-10 |
| 15 | GO:0010218: response to far red light | 9.75E-10 |
| 16 | GO:0009637: response to blue light | 6.58E-08 |
| 17 | GO:0009644: response to high light intensity | 1.92E-07 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 8.45E-07 |
| 19 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.72E-06 |
| 20 | GO:0007623: circadian rhythm | 5.98E-06 |
| 21 | GO:0009409: response to cold | 6.05E-06 |
| 22 | GO:0009765: photosynthesis, light harvesting | 2.77E-05 |
| 23 | GO:0009416: response to light stimulus | 6.32E-05 |
| 24 | GO:0010196: nonphotochemical quenching | 1.22E-04 |
| 25 | GO:0015812: gamma-aminobutyric acid transport | 1.93E-04 |
| 26 | GO:0032958: inositol phosphate biosynthetic process | 1.93E-04 |
| 27 | GO:0080167: response to karrikin | 2.77E-04 |
| 28 | GO:0051170: nuclear import | 4.33E-04 |
| 29 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 4.33E-04 |
| 30 | GO:0006521: regulation of cellular amino acid metabolic process | 4.33E-04 |
| 31 | GO:0051262: protein tetramerization | 4.33E-04 |
| 32 | GO:1902448: positive regulation of shade avoidance | 7.06E-04 |
| 33 | GO:0006598: polyamine catabolic process | 7.06E-04 |
| 34 | GO:0090153: regulation of sphingolipid biosynthetic process | 7.06E-04 |
| 35 | GO:0061077: chaperone-mediated protein folding | 9.35E-04 |
| 36 | GO:0009269: response to desiccation | 9.35E-04 |
| 37 | GO:0048511: rhythmic process | 9.35E-04 |
| 38 | GO:0044211: CTP salvage | 1.01E-03 |
| 39 | GO:0031936: negative regulation of chromatin silencing | 1.01E-03 |
| 40 | GO:0050482: arachidonic acid secretion | 1.01E-03 |
| 41 | GO:0006020: inositol metabolic process | 1.01E-03 |
| 42 | GO:0010017: red or far-red light signaling pathway | 1.02E-03 |
| 43 | GO:0010600: regulation of auxin biosynthetic process | 1.34E-03 |
| 44 | GO:0044206: UMP salvage | 1.34E-03 |
| 45 | GO:0030104: water homeostasis | 1.34E-03 |
| 46 | GO:0042938: dipeptide transport | 1.34E-03 |
| 47 | GO:2000306: positive regulation of photomorphogenesis | 1.34E-03 |
| 48 | GO:0034052: positive regulation of plant-type hypersensitive response | 1.70E-03 |
| 49 | GO:0043097: pyrimidine nucleoside salvage | 1.70E-03 |
| 50 | GO:0016123: xanthophyll biosynthetic process | 1.70E-03 |
| 51 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 1.70E-03 |
| 52 | GO:0055114: oxidation-reduction process | 1.99E-03 |
| 53 | GO:0045962: positive regulation of development, heterochronic | 2.10E-03 |
| 54 | GO:0006206: pyrimidine nucleobase metabolic process | 2.10E-03 |
| 55 | GO:0009635: response to herbicide | 2.10E-03 |
| 56 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.10E-03 |
| 57 | GO:1901657: glycosyl compound metabolic process | 2.11E-03 |
| 58 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.52E-03 |
| 59 | GO:0010189: vitamin E biosynthetic process | 2.52E-03 |
| 60 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 2.52E-03 |
| 61 | GO:0071470: cellular response to osmotic stress | 2.52E-03 |
| 62 | GO:0080111: DNA demethylation | 2.96E-03 |
| 63 | GO:0010161: red light signaling pathway | 2.96E-03 |
| 64 | GO:1900056: negative regulation of leaf senescence | 2.96E-03 |
| 65 | GO:0005975: carbohydrate metabolic process | 3.32E-03 |
| 66 | GO:0010928: regulation of auxin mediated signaling pathway | 3.43E-03 |
| 67 | GO:0043068: positive regulation of programmed cell death | 3.43E-03 |
| 68 | GO:0009704: de-etiolation | 3.43E-03 |
| 69 | GO:0006644: phospholipid metabolic process | 3.43E-03 |
| 70 | GO:0000160: phosphorelay signal transduction system | 3.65E-03 |
| 71 | GO:0009827: plant-type cell wall modification | 3.93E-03 |
| 72 | GO:0007186: G-protein coupled receptor signaling pathway | 3.93E-03 |
| 73 | GO:0010099: regulation of photomorphogenesis | 3.93E-03 |
| 74 | GO:0010119: regulation of stomatal movement | 4.01E-03 |
| 75 | GO:0090333: regulation of stomatal closure | 4.44E-03 |
| 76 | GO:1900865: chloroplast RNA modification | 4.99E-03 |
| 77 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 4.99E-03 |
| 78 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.99E-03 |
| 79 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.99E-03 |
| 80 | GO:0042542: response to hydrogen peroxide | 5.44E-03 |
| 81 | GO:0009688: abscisic acid biosynthetic process | 5.55E-03 |
| 82 | GO:0009641: shade avoidance | 5.55E-03 |
| 83 | GO:0006949: syncytium formation | 5.55E-03 |
| 84 | GO:0009735: response to cytokinin | 5.61E-03 |
| 85 | GO:0009640: photomorphogenesis | 5.66E-03 |
| 86 | GO:0009658: chloroplast organization | 5.73E-03 |
| 87 | GO:0008643: carbohydrate transport | 6.12E-03 |
| 88 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.13E-03 |
| 89 | GO:0030148: sphingolipid biosynthetic process | 6.13E-03 |
| 90 | GO:0046856: phosphatidylinositol dephosphorylation | 6.13E-03 |
| 91 | GO:0015706: nitrate transport | 6.73E-03 |
| 92 | GO:0006812: cation transport | 7.11E-03 |
| 93 | GO:0018107: peptidyl-threonine phosphorylation | 7.36E-03 |
| 94 | GO:0009718: anthocyanin-containing compound biosynthetic process | 7.36E-03 |
| 95 | GO:0009767: photosynthetic electron transport chain | 7.36E-03 |
| 96 | GO:0009585: red, far-red light phototransduction | 7.63E-03 |
| 97 | GO:0010207: photosystem II assembly | 8.01E-03 |
| 98 | GO:0009887: animal organ morphogenesis | 8.01E-03 |
| 99 | GO:0009266: response to temperature stimulus | 8.01E-03 |
| 100 | GO:0006857: oligopeptide transport | 8.18E-03 |
| 101 | GO:0044550: secondary metabolite biosynthetic process | 8.39E-03 |
| 102 | GO:0090351: seedling development | 8.67E-03 |
| 103 | GO:0043086: negative regulation of catalytic activity | 9.03E-03 |
| 104 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.35E-03 |
| 105 | GO:0006289: nucleotide-excision repair | 1.01E-02 |
| 106 | GO:0006874: cellular calcium ion homeostasis | 1.08E-02 |
| 107 | GO:0009624: response to nematode | 1.09E-02 |
| 108 | GO:0003333: amino acid transmembrane transport | 1.15E-02 |
| 109 | GO:0032259: methylation | 1.17E-02 |
| 110 | GO:0009814: defense response, incompatible interaction | 1.23E-02 |
| 111 | GO:0071215: cellular response to abscisic acid stimulus | 1.31E-02 |
| 112 | GO:0009686: gibberellin biosynthetic process | 1.31E-02 |
| 113 | GO:0045492: xylan biosynthetic process | 1.39E-02 |
| 114 | GO:0070417: cellular response to cold | 1.47E-02 |
| 115 | GO:0006351: transcription, DNA-templated | 1.60E-02 |
| 116 | GO:0010182: sugar mediated signaling pathway | 1.63E-02 |
| 117 | GO:0007018: microtubule-based movement | 1.72E-02 |
| 118 | GO:0006814: sodium ion transport | 1.72E-02 |
| 119 | GO:0042752: regulation of circadian rhythm | 1.72E-02 |
| 120 | GO:0006355: regulation of transcription, DNA-templated | 1.87E-02 |
| 121 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.90E-02 |
| 122 | GO:0000302: response to reactive oxygen species | 1.90E-02 |
| 123 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.98E-02 |
| 124 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.11E-02 |
| 125 | GO:0009828: plant-type cell wall loosening | 2.18E-02 |
| 126 | GO:0009908: flower development | 2.25E-02 |
| 127 | GO:0016126: sterol biosynthetic process | 2.47E-02 |
| 128 | GO:0010029: regulation of seed germination | 2.57E-02 |
| 129 | GO:0048573: photoperiodism, flowering | 2.77E-02 |
| 130 | GO:0006950: response to stress | 2.77E-02 |
| 131 | GO:0009817: defense response to fungus, incompatible interaction | 2.98E-02 |
| 132 | GO:0006970: response to osmotic stress | 3.15E-02 |
| 133 | GO:0006811: ion transport | 3.20E-02 |
| 134 | GO:0009631: cold acclimation | 3.31E-02 |
| 135 | GO:0009910: negative regulation of flower development | 3.31E-02 |
| 136 | GO:0009723: response to ethylene | 3.38E-02 |
| 137 | GO:0006865: amino acid transport | 3.42E-02 |
| 138 | GO:0034599: cellular response to oxidative stress | 3.64E-02 |
| 139 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.74E-02 |
| 140 | GO:0009651: response to salt stress | 4.19E-02 |
| 141 | GO:0051707: response to other organism | 4.23E-02 |
| 142 | GO:0045892: negative regulation of transcription, DNA-templated | 4.39E-02 |
| 143 | GO:0009965: leaf morphogenesis | 4.59E-02 |
| 144 | GO:0009664: plant-type cell wall organization | 4.96E-02 |
| 145 | GO:0042538: hyperosmotic salinity response | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 2 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 3 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 4 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 6 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 7 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 8 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 10 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 11 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 12 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 13 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 14 | GO:0031409: pigment binding | 1.45E-19 |
| 15 | GO:0016168: chlorophyll binding | 8.66E-16 |
| 16 | GO:0000828: inositol hexakisphosphate kinase activity | 1.93E-04 |
| 17 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.93E-04 |
| 18 | GO:0052631: sphingolipid delta-8 desaturase activity | 1.93E-04 |
| 19 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 1.93E-04 |
| 20 | GO:0015185: gamma-aminobutyric acid transmembrane transporter activity | 1.93E-04 |
| 21 | GO:0008158: hedgehog receptor activity | 1.93E-04 |
| 22 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 1.93E-04 |
| 23 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.93E-04 |
| 24 | GO:0000829: inositol heptakisphosphate kinase activity | 1.93E-04 |
| 25 | GO:0005227: calcium activated cation channel activity | 1.93E-04 |
| 26 | GO:0080079: cellobiose glucosidase activity | 1.93E-04 |
| 27 | GO:0015180: L-alanine transmembrane transporter activity | 4.33E-04 |
| 28 | GO:0004565: beta-galactosidase activity | 5.01E-04 |
| 29 | GO:0016787: hydrolase activity | 6.35E-04 |
| 30 | GO:0046592: polyamine oxidase activity | 7.06E-04 |
| 31 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 7.06E-04 |
| 32 | GO:0046872: metal ion binding | 8.08E-04 |
| 33 | GO:0015181: arginine transmembrane transporter activity | 1.01E-03 |
| 34 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.01E-03 |
| 35 | GO:0016851: magnesium chelatase activity | 1.01E-03 |
| 36 | GO:0015189: L-lysine transmembrane transporter activity | 1.01E-03 |
| 37 | GO:0015171: amino acid transmembrane transporter activity | 1.20E-03 |
| 38 | GO:0005313: L-glutamate transmembrane transporter activity | 1.34E-03 |
| 39 | GO:0004506: squalene monooxygenase activity | 1.34E-03 |
| 40 | GO:0070628: proteasome binding | 1.34E-03 |
| 41 | GO:0004930: G-protein coupled receptor activity | 1.34E-03 |
| 42 | GO:0004845: uracil phosphoribosyltransferase activity | 1.34E-03 |
| 43 | GO:0042936: dipeptide transporter activity | 1.34E-03 |
| 44 | GO:0004623: phospholipase A2 activity | 1.70E-03 |
| 45 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.70E-03 |
| 46 | GO:0015562: efflux transmembrane transporter activity | 2.10E-03 |
| 47 | GO:0031593: polyubiquitin binding | 2.10E-03 |
| 48 | GO:0004462: lactoylglutathione lyase activity | 2.10E-03 |
| 49 | GO:0000156: phosphorelay response regulator activity | 2.11E-03 |
| 50 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.26E-03 |
| 51 | GO:0005261: cation channel activity | 2.52E-03 |
| 52 | GO:0004849: uridine kinase activity | 2.52E-03 |
| 53 | GO:0004602: glutathione peroxidase activity | 2.52E-03 |
| 54 | GO:0015297: antiporter activity | 3.10E-03 |
| 55 | GO:0102483: scopolin beta-glucosidase activity | 3.14E-03 |
| 56 | GO:0004564: beta-fructofuranosidase activity | 3.43E-03 |
| 57 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.93E-03 |
| 58 | GO:0071949: FAD binding | 4.44E-03 |
| 59 | GO:0000989: transcription factor activity, transcription factor binding | 4.44E-03 |
| 60 | GO:0008422: beta-glucosidase activity | 4.80E-03 |
| 61 | GO:0004575: sucrose alpha-glucosidase activity | 4.99E-03 |
| 62 | GO:0008168: methyltransferase activity | 5.46E-03 |
| 63 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 5.55E-03 |
| 64 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.12E-03 |
| 65 | GO:0044183: protein binding involved in protein folding | 6.13E-03 |
| 66 | GO:0047372: acylglycerol lipase activity | 6.13E-03 |
| 67 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.73E-03 |
| 68 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.36E-03 |
| 69 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.36E-03 |
| 70 | GO:0008131: primary amine oxidase activity | 8.01E-03 |
| 71 | GO:0005217: intracellular ligand-gated ion channel activity | 8.67E-03 |
| 72 | GO:0003712: transcription cofactor activity | 8.67E-03 |
| 73 | GO:0004970: ionotropic glutamate receptor activity | 8.67E-03 |
| 74 | GO:0004190: aspartic-type endopeptidase activity | 8.67E-03 |
| 75 | GO:0005515: protein binding | 8.89E-03 |
| 76 | GO:0043130: ubiquitin binding | 1.01E-02 |
| 77 | GO:0005216: ion channel activity | 1.08E-02 |
| 78 | GO:0008324: cation transmembrane transporter activity | 1.08E-02 |
| 79 | GO:0004707: MAP kinase activity | 1.15E-02 |
| 80 | GO:0003677: DNA binding | 1.30E-02 |
| 81 | GO:0008514: organic anion transmembrane transporter activity | 1.39E-02 |
| 82 | GO:0008536: Ran GTPase binding | 1.63E-02 |
| 83 | GO:0046910: pectinesterase inhibitor activity | 1.76E-02 |
| 84 | GO:0005506: iron ion binding | 1.82E-02 |
| 85 | GO:0048038: quinone binding | 1.90E-02 |
| 86 | GO:0005215: transporter activity | 2.17E-02 |
| 87 | GO:0003684: damaged DNA binding | 2.18E-02 |
| 88 | GO:0016597: amino acid binding | 2.37E-02 |
| 89 | GO:0003682: chromatin binding | 3.09E-02 |
| 90 | GO:0004497: monooxygenase activity | 3.62E-02 |
| 91 | GO:0003993: acid phosphatase activity | 3.64E-02 |
| 92 | GO:0042393: histone binding | 3.87E-02 |
| 93 | GO:0043621: protein self-association | 4.47E-02 |
| 94 | GO:0005198: structural molecule activity | 4.59E-02 |
| 95 | GO:0015293: symporter activity | 4.59E-02 |
| 96 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009534: chloroplast thylakoid | 3.23E-20 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.53E-18 |
| 5 | GO:0009522: photosystem I | 3.31E-17 |
| 6 | GO:0010287: plastoglobule | 1.95E-15 |
| 7 | GO:0030076: light-harvesting complex | 3.38E-15 |
| 8 | GO:0009579: thylakoid | 8.84E-15 |
| 9 | GO:0009941: chloroplast envelope | 6.36E-12 |
| 10 | GO:0009507: chloroplast | 9.87E-09 |
| 11 | GO:0009517: PSII associated light-harvesting complex II | 1.34E-07 |
| 12 | GO:0009523: photosystem II | 1.59E-07 |
| 13 | GO:0009538: photosystem I reaction center | 2.63E-06 |
| 14 | GO:0016021: integral component of membrane | 2.22E-05 |
| 15 | GO:0042651: thylakoid membrane | 4.93E-05 |
| 16 | GO:0016020: membrane | 6.20E-05 |
| 17 | GO:0010007: magnesium chelatase complex | 7.06E-04 |
| 18 | GO:0030660: Golgi-associated vesicle membrane | 1.34E-03 |
| 19 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.34E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 1.65E-03 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 2.96E-03 |
| 22 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 3.43E-03 |
| 23 | GO:0005765: lysosomal membrane | 6.13E-03 |
| 24 | GO:0031966: mitochondrial membrane | 7.11E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 8.01E-03 |
| 26 | GO:0009570: chloroplast stroma | 8.99E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 1.08E-02 |
| 28 | GO:0031410: cytoplasmic vesicle | 1.23E-02 |
| 29 | GO:0005871: kinesin complex | 1.47E-02 |
| 30 | GO:0019898: extrinsic component of membrane | 1.81E-02 |
| 31 | GO:0031969: chloroplast membrane | 3.62E-02 |
| 32 | GO:0031977: thylakoid lumen | 3.99E-02 |