co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.16E-05
5	GO:0009913: epidermal cell differentiation	3.90E-05
6	GO:0009772: photosynthetic electron transport in photosystem II	7.34E-05
7	GO:0009735: response to cytokinin	1.04E-04
8	GO:0033481: galacturonate biosynthetic process	1.40E-04
9	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.40E-04
10	GO:0090548: response to nitrate starvation	1.40E-04
11	GO:1902025: nitrate import	1.40E-04
12	GO:0043489: RNA stabilization	1.40E-04
13	GO:0010205: photoinhibition	1.76E-04
14	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-04
15	GO:0001736: establishment of planar polarity	3.20E-04
16	GO:0010024: phytochromobilin biosynthetic process	3.20E-04
17	GO:0043255: regulation of carbohydrate biosynthetic process	3.20E-04
18	GO:0010115: regulation of abscisic acid biosynthetic process	3.20E-04
19	GO:0010167: response to nitrate	4.07E-04
20	GO:0006636: unsaturated fatty acid biosynthetic process	4.54E-04
21	GO:0051176: positive regulation of sulfur metabolic process	5.26E-04
22	GO:0006788: heme oxidation	5.26E-04
23	GO:0015714: phosphoenolpyruvate transport	5.26E-04
24	GO:0090391: granum assembly	5.26E-04
25	GO:0006518: peptide metabolic process	5.26E-04
26	GO:0031408: oxylipin biosynthetic process	6.07E-04
27	GO:0071369: cellular response to ethylene stimulus	7.22E-04
28	GO:0071484: cellular response to light intensity	7.53E-04
29	GO:0080170: hydrogen peroxide transmembrane transport	7.53E-04
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.53E-04
31	GO:0009650: UV protection	7.53E-04
32	GO:1901332: negative regulation of lateral root development	7.53E-04
33	GO:0042335: cuticle development	9.10E-04
34	GO:0006183: GTP biosynthetic process	9.98E-04
35	GO:0045727: positive regulation of translation	9.98E-04
36	GO:0030104: water homeostasis	9.98E-04
37	GO:0015713: phosphoglycerate transport	9.98E-04
38	GO:0009435: NAD biosynthetic process	1.26E-03
39	GO:0030308: negative regulation of cell growth	1.26E-03
40	GO:0006564: L-serine biosynthetic process	1.26E-03
41	GO:0010236: plastoquinone biosynthetic process	1.26E-03
42	GO:0006561: proline biosynthetic process	1.55E-03
43	GO:0042549: photosystem II stabilization	1.55E-03
44	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.55E-03
45	GO:0010337: regulation of salicylic acid metabolic process	1.55E-03
46	GO:0006633: fatty acid biosynthetic process	1.65E-03
47	GO:0045490: pectin catabolic process	1.85E-03
48	GO:0010189: vitamin E biosynthetic process	1.86E-03
49	GO:0006694: steroid biosynthetic process	1.86E-03
50	GO:0015995: chlorophyll biosynthetic process	2.01E-03
51	GO:0009395: phospholipid catabolic process	2.18E-03
52	GO:0010196: nonphotochemical quenching	2.18E-03
53	GO:0050829: defense response to Gram-negative bacterium	2.18E-03
54	GO:1900057: positive regulation of leaf senescence	2.18E-03
55	GO:0010311: lateral root formation	2.33E-03
56	GO:0031540: regulation of anthocyanin biosynthetic process	2.52E-03
57	GO:0055075: potassium ion homeostasis	2.52E-03
58	GO:0016559: peroxisome fission	2.52E-03
59	GO:0008610: lipid biosynthetic process	2.52E-03
60	GO:0030091: protein repair	2.52E-03
61	GO:0009808: lignin metabolic process	2.88E-03
62	GO:0032544: plastid translation	2.88E-03
63	GO:0009060: aerobic respiration	3.26E-03
64	GO:0010206: photosystem II repair	3.26E-03
65	GO:0034765: regulation of ion transmembrane transport	3.26E-03
66	GO:0009688: abscisic acid biosynthetic process	4.06E-03
67	GO:0048829: root cap development	4.06E-03
68	GO:0006032: chitin catabolic process	4.06E-03
69	GO:0009750: response to fructose	4.48E-03
70	GO:0048765: root hair cell differentiation	4.48E-03
71	GO:0000038: very long-chain fatty acid metabolic process	4.48E-03
72	GO:0009809: lignin biosynthetic process	4.85E-03
73	GO:0016024: CDP-diacylglycerol biosynthetic process	4.92E-03
74	GO:0015706: nitrate transport	4.92E-03
75	GO:0005975: carbohydrate metabolic process	4.95E-03
76	GO:0015979: photosynthesis	5.00E-03
77	GO:0006857: oligopeptide transport	5.19E-03
78	GO:0010229: inflorescence development	5.37E-03
79	GO:0010102: lateral root morphogenesis	5.37E-03
80	GO:0010628: positive regulation of gene expression	5.37E-03
81	GO:0006006: glucose metabolic process	5.37E-03
82	GO:0006096: glycolytic process	5.73E-03
83	GO:0048467: gynoecium development	5.84E-03
84	GO:0010143: cutin biosynthetic process	5.84E-03
85	GO:0010020: chloroplast fission	5.84E-03
86	GO:0010207: photosystem II assembly	5.84E-03
87	GO:0019253: reductive pentose-phosphate cycle	5.84E-03
88	GO:0010030: positive regulation of seed germination	6.32E-03
89	GO:0010053: root epidermal cell differentiation	6.32E-03
90	GO:0009225: nucleotide-sugar metabolic process	6.32E-03
91	GO:0009825: multidimensional cell growth	6.32E-03
92	GO:0071732: cellular response to nitric oxide	6.32E-03
93	GO:0016042: lipid catabolic process	6.68E-03
94	GO:0010025: wax biosynthetic process	6.81E-03
95	GO:0042023: DNA endoreduplication	6.81E-03
96	GO:0009624: response to nematode	6.89E-03
97	GO:0007017: microtubule-based process	7.84E-03
98	GO:0009695: jasmonic acid biosynthetic process	7.84E-03
99	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
100	GO:0048511: rhythmic process	8.38E-03
101	GO:0003333: amino acid transmembrane transport	8.38E-03
102	GO:0016226: iron-sulfur cluster assembly	8.92E-03
103	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.48E-03
104	GO:0009411: response to UV	9.48E-03
105	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.06E-02
106	GO:0009734: auxin-activated signaling pathway	1.07E-02
107	GO:0034220: ion transmembrane transport	1.12E-02
108	GO:0042631: cellular response to water deprivation	1.12E-02
109	GO:0009733: response to auxin	1.12E-02
110	GO:0042391: regulation of membrane potential	1.12E-02
111	GO:0080022: primary root development	1.12E-02
112	GO:0010182: sugar mediated signaling pathway	1.18E-02
113	GO:0009958: positive gravitropism	1.18E-02
114	GO:0007623: circadian rhythm	1.19E-02
115	GO:0006468: protein phosphorylation	1.22E-02
116	GO:0015986: ATP synthesis coupled proton transport	1.25E-02
117	GO:0042752: regulation of circadian rhythm	1.25E-02
118	GO:0048825: cotyledon development	1.31E-02
119	GO:0016132: brassinosteroid biosynthetic process	1.37E-02
120	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.37E-02
121	GO:0009416: response to light stimulus	1.44E-02
122	GO:0016032: viral process	1.44E-02
123	GO:0009409: response to cold	1.48E-02
124	GO:0071281: cellular response to iron ion	1.51E-02
125	GO:0009828: plant-type cell wall loosening	1.58E-02
126	GO:0010252: auxin homeostasis	1.58E-02
127	GO:0071805: potassium ion transmembrane transport	1.64E-02
128	GO:0009826: unidimensional cell growth	1.78E-02
129	GO:0010027: thylakoid membrane organization	1.79E-02
130	GO:0048573: photoperiodism, flowering	2.00E-02
131	GO:0030244: cellulose biosynthetic process	2.16E-02
132	GO:0055114: oxidation-reduction process	2.27E-02
133	GO:0080167: response to karrikin	2.30E-02
134	GO:0009834: plant-type secondary cell wall biogenesis	2.31E-02
135	GO:0009631: cold acclimation	2.39E-02
136	GO:0006865: amino acid transport	2.47E-02
137	GO:0009637: response to blue light	2.55E-02
138	GO:0045087: innate immune response	2.55E-02
139	GO:0007165: signal transduction	2.81E-02
140	GO:0006869: lipid transport	3.02E-02
141	GO:0009926: auxin polar transport	3.06E-02
142	GO:0008283: cell proliferation	3.06E-02
143	GO:0032259: methylation	3.25E-02
144	GO:0009408: response to heat	3.39E-02
145	GO:0006855: drug transmembrane transport	3.41E-02
146	GO:0042742: defense response to bacterium	3.48E-02
147	GO:0009664: plant-type cell wall organization	3.59E-02
148	GO:0006364: rRNA processing	3.78E-02
149	GO:0042545: cell wall modification	4.75E-02
150	GO:0006396: RNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0008987: quinolinate synthetase A activity	0.00E+00
6	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0016788: hydrolase activity, acting on ester bonds	7.32E-05
10	GO:0052689: carboxylic ester hydrolase activity	1.37E-04
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.40E-04
12	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.40E-04
13	GO:0045485: omega-6 fatty acid desaturase activity	1.40E-04
14	GO:0004321: fatty-acyl-CoA synthase activity	1.40E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	3.20E-04
16	GO:0003938: IMP dehydrogenase activity	3.20E-04
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.20E-04
18	GO:0004565: beta-galactosidase activity	3.21E-04
19	GO:0008266: poly(U) RNA binding	3.63E-04
20	GO:0005528: FK506 binding	5.03E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.26E-04
22	GO:0090729: toxin activity	5.26E-04
23	GO:0030570: pectate lyase activity	7.22E-04
24	GO:0016851: magnesium chelatase activity	7.53E-04
25	GO:0015120: phosphoglycerate transmembrane transporter activity	9.98E-04
26	GO:0010011: auxin binding	9.98E-04
27	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.98E-04
28	GO:0010328: auxin influx transmembrane transporter activity	9.98E-04
29	GO:0052793: pectin acetylesterase activity	9.98E-04
30	GO:0050378: UDP-glucuronate 4-epimerase activity	9.98E-04
31	GO:0042277: peptide binding	9.98E-04
32	GO:0004392: heme oxygenase (decyclizing) activity	9.98E-04
33	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.55E-03
34	GO:0035673: oligopeptide transmembrane transporter activity	1.55E-03
35	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.55E-03
36	GO:0005242: inward rectifier potassium channel activity	1.86E-03
37	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.86E-03
38	GO:0042802: identical protein binding	2.51E-03
39	GO:0052747: sinapyl alcohol dehydrogenase activity	2.52E-03
40	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.88E-03
41	GO:0016207: 4-coumarate-CoA ligase activity	3.26E-03
42	GO:0015112: nitrate transmembrane transporter activity	3.65E-03
43	GO:0015293: symporter activity	4.05E-03
44	GO:0004568: chitinase activity	4.06E-03
45	GO:0008047: enzyme activator activity	4.06E-03
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.20E-03
47	GO:0051287: NAD binding	4.36E-03
48	GO:0004672: protein kinase activity	4.67E-03
49	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.92E-03
50	GO:0015198: oligopeptide transporter activity	4.92E-03
51	GO:0004022: alcohol dehydrogenase (NAD) activity	5.37E-03
52	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.84E-03
53	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.81E-03
54	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.81E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.81E-03
56	GO:0016746: transferase activity, transferring acyl groups	7.10E-03
57	GO:0016829: lyase activity	9.35E-03
58	GO:0003824: catalytic activity	1.08E-02
59	GO:0005249: voltage-gated potassium channel activity	1.12E-02
60	GO:0030551: cyclic nucleotide binding	1.12E-02
61	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.18E-02
62	GO:0008017: microtubule binding	1.25E-02
63	GO:0050662: coenzyme binding	1.25E-02
64	GO:0004674: protein serine/threonine kinase activity	1.34E-02
65	GO:0004518: nuclease activity	1.44E-02
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.52E-02
67	GO:0016791: phosphatase activity	1.58E-02
68	GO:0005200: structural constituent of cytoskeleton	1.64E-02
69	GO:0016597: amino acid binding	1.71E-02
70	GO:0015250: water channel activity	1.79E-02
71	GO:0030247: polysaccharide binding	2.00E-02
72	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.08E-02
73	GO:0004222: metalloendopeptidase activity	2.31E-02
74	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
75	GO:0003993: acid phosphatase activity	2.63E-02
76	GO:0050661: NADP binding	2.80E-02
77	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
78	GO:0003924: GTPase activity	3.39E-02
79	GO:0003690: double-stranded DNA binding	3.87E-02
80	GO:0005215: transporter activity	3.94E-02
81	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
82	GO:0045330: aspartyl esterase activity	4.06E-02
83	GO:0016874: ligase activity	4.65E-02
84	GO:0030599: pectinesterase activity	4.65E-02
85	GO:0022857: transmembrane transporter activity	4.65E-02
86	GO:0008289: lipid binding	4.70E-02
87	GO:0003779: actin binding	4.75E-02
88	GO:0016491: oxidoreductase activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009579: thylakoid	2.92E-06
3	GO:0009534: chloroplast thylakoid	3.03E-06
4	GO:0009941: chloroplast envelope	2.58E-05
5	GO:0005886: plasma membrane	3.99E-05
6	GO:0009535: chloroplast thylakoid membrane	4.48E-05
7	GO:0043674: columella	1.40E-04
8	GO:0009515: granal stacked thylakoid	1.40E-04
9	GO:0009543: chloroplast thylakoid lumen	1.59E-04
10	GO:0009507: chloroplast	1.79E-04
11	GO:0048046: apoplast	2.11E-04
12	GO:0010007: magnesium chelatase complex	5.26E-04
13	GO:0015630: microtubule cytoskeleton	7.53E-04
14	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.55E-03
15	GO:0009986: cell surface	2.18E-03
16	GO:0042807: central vacuole	2.18E-03
17	GO:0005618: cell wall	2.88E-03
18	GO:0008180: COP9 signalosome	3.26E-03
19	GO:0031977: thylakoid lumen	3.33E-03
20	GO:0005576: extracellular region	3.85E-03
21	GO:0055028: cortical microtubule	4.06E-03
22	GO:0031969: chloroplast membrane	4.23E-03
23	GO:0016020: membrane	5.63E-03
24	GO:0030095: chloroplast photosystem II	5.84E-03
25	GO:0031225: anchored component of membrane	6.31E-03
26	GO:0009706: chloroplast inner membrane	6.89E-03
27	GO:0010287: plastoglobule	8.18E-03
28	GO:0009570: chloroplast stroma	8.56E-03
29	GO:0005887: integral component of plasma membrane	1.02E-02
30	GO:0009505: plant-type cell wall	1.32E-02
31	GO:0016021: integral component of membrane	1.40E-02
32	GO:0046658: anchored component of plasma membrane	1.58E-02
33	GO:0032580: Golgi cisterna membrane	1.58E-02
34	GO:0010319: stromule	1.64E-02
35	GO:0030529: intracellular ribonucleoprotein complex	1.79E-02
36	GO:0019005: SCF ubiquitin ligase complex	2.16E-02
37	GO:0009707: chloroplast outer membrane	2.16E-02
38	GO:0005874: microtubule	2.22E-02
39	GO:0005768: endosome	3.05E-02
40	GO:0000502: proteasome complex	3.78E-02