co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090393: sepal giant cell development	0.00E+00
2	GO:0010411: xyloglucan metabolic process	1.32E-05
3	GO:0071555: cell wall organization	3.37E-05
4	GO:0042546: cell wall biogenesis	4.72E-05
5	GO:0071554: cell wall organization or biogenesis	1.11E-04
6	GO:0071370: cellular response to gibberellin stimulus	1.58E-04
7	GO:0016126: sterol biosynthetic process	1.89E-04
8	GO:0060919: auxin influx	3.60E-04
9	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.60E-04
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.60E-04
11	GO:2000123: positive regulation of stomatal complex development	3.60E-04
12	GO:0006833: water transport	5.37E-04
13	GO:0006000: fructose metabolic process	5.89E-04
14	GO:0015840: urea transport	5.89E-04
15	GO:0033591: response to L-ascorbic acid	5.89E-04
16	GO:0051016: barbed-end actin filament capping	8.43E-04
17	GO:0006165: nucleoside diphosphate phosphorylation	8.43E-04
18	GO:0006228: UTP biosynthetic process	8.43E-04
19	GO:0006168: adenine salvage	8.43E-04
20	GO:0032877: positive regulation of DNA endoreduplication	8.43E-04
21	GO:0006166: purine ribonucleoside salvage	8.43E-04
22	GO:0006241: CTP biosynthetic process	8.43E-04
23	GO:0080170: hydrogen peroxide transmembrane transport	8.43E-04
24	GO:0034220: ion transmembrane transport	1.07E-03
25	GO:0006749: glutathione metabolic process	1.12E-03
26	GO:2000122: negative regulation of stomatal complex development	1.12E-03
27	GO:2000038: regulation of stomatal complex development	1.12E-03
28	GO:0006546: glycine catabolic process	1.12E-03
29	GO:0010037: response to carbon dioxide	1.12E-03
30	GO:0015976: carbon utilization	1.12E-03
31	GO:0006183: GTP biosynthetic process	1.12E-03
32	GO:0046785: microtubule polymerization	1.41E-03
33	GO:0044209: AMP salvage	1.41E-03
34	GO:0032876: negative regulation of DNA endoreduplication	1.41E-03
35	GO:0010375: stomatal complex patterning	1.41E-03
36	GO:0010583: response to cyclopentenone	1.51E-03
37	GO:0000741: karyogamy	1.74E-03
38	GO:0007267: cell-cell signaling	1.81E-03
39	GO:0006633: fatty acid biosynthetic process	2.05E-03
40	GO:0045926: negative regulation of growth	2.09E-03
41	GO:0009612: response to mechanical stimulus	2.09E-03
42	GO:0017148: negative regulation of translation	2.09E-03
43	GO:0009554: megasporogenesis	2.09E-03
44	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.09E-03
45	GO:0009645: response to low light intensity stimulus	2.45E-03
46	GO:0006402: mRNA catabolic process	2.84E-03
47	GO:0045010: actin nucleation	2.84E-03
48	GO:0009617: response to bacterium	2.89E-03
49	GO:0007389: pattern specification process	3.25E-03
50	GO:0006002: fructose 6-phosphate metabolic process	3.25E-03
51	GO:0016051: carbohydrate biosynthetic process	3.33E-03
52	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.58E-03
53	GO:0043069: negative regulation of programmed cell death	4.58E-03
54	GO:0048829: root cap development	4.58E-03
55	GO:0009773: photosynthetic electron transport in photosystem I	5.05E-03
56	GO:0009684: indoleacetic acid biosynthetic process	5.05E-03
57	GO:0000038: very long-chain fatty acid metabolic process	5.05E-03
58	GO:0080167: response to karrikin	5.28E-03
59	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.51E-03
60	GO:0016024: CDP-diacylglycerol biosynthetic process	5.55E-03
61	GO:0051603: proteolysis involved in cellular protein catabolic process	5.98E-03
62	GO:2000028: regulation of photoperiodism, flowering	6.06E-03
63	GO:0030036: actin cytoskeleton organization	6.06E-03
64	GO:0050826: response to freezing	6.06E-03
65	GO:0009725: response to hormone	6.06E-03
66	GO:0006094: gluconeogenesis	6.06E-03
67	GO:0005986: sucrose biosynthetic process	6.06E-03
68	GO:0019253: reductive pentose-phosphate cycle	6.59E-03
69	GO:0010143: cutin biosynthetic process	6.59E-03
70	GO:0005975: carbohydrate metabolic process	6.74E-03
71	GO:0009825: multidimensional cell growth	7.13E-03
72	GO:0005985: sucrose metabolic process	7.13E-03
73	GO:0006636: unsaturated fatty acid biosynthetic process	7.69E-03
74	GO:0009742: brassinosteroid mediated signaling pathway	8.71E-03
75	GO:0007017: microtubule-based process	8.86E-03
76	GO:0003333: amino acid transmembrane transport	9.46E-03
77	GO:0019748: secondary metabolic process	1.01E-02
78	GO:0009294: DNA mediated transformation	1.07E-02
79	GO:0019722: calcium-mediated signaling	1.14E-02
80	GO:0042335: cuticle development	1.27E-02
81	GO:0000271: polysaccharide biosynthetic process	1.27E-02
82	GO:0080022: primary root development	1.27E-02
83	GO:0010051: xylem and phloem pattern formation	1.27E-02
84	GO:0045489: pectin biosynthetic process	1.34E-02
85	GO:0010197: polar nucleus fusion	1.34E-02
86	GO:0009741: response to brassinosteroid	1.34E-02
87	GO:0019252: starch biosynthetic process	1.48E-02
88	GO:0007166: cell surface receptor signaling pathway	1.63E-02
89	GO:0010090: trichome morphogenesis	1.71E-02
90	GO:1901657: glycosyl compound metabolic process	1.71E-02
91	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.10E-02
92	GO:0006810: transport	2.17E-02
93	GO:0006508: proteolysis	2.27E-02
94	GO:0016311: dephosphorylation	2.36E-02
95	GO:0055085: transmembrane transport	2.42E-02
96	GO:0007049: cell cycle	2.47E-02
97	GO:0010311: lateral root formation	2.53E-02
98	GO:0000160: phosphorelay signal transduction system	2.53E-02
99	GO:0009407: toxin catabolic process	2.62E-02
100	GO:0010119: regulation of stomatal movement	2.71E-02
101	GO:0006865: amino acid transport	2.80E-02
102	GO:0006631: fatty acid metabolic process	3.27E-02
103	GO:0008283: cell proliferation	3.46E-02
104	GO:0009926: auxin polar transport	3.46E-02
105	GO:0009744: response to sucrose	3.46E-02
106	GO:0009636: response to toxic substance	3.76E-02
107	GO:0032259: methylation	3.86E-02
108	GO:0009736: cytokinin-activated signaling pathway	4.28E-02
109	GO:0006468: protein phosphorylation	4.34E-02
110	GO:0009733: response to auxin	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.18E-06
4	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.32E-05
5	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.23E-05
6	GO:0080132: fatty acid alpha-hydroxylase activity	1.58E-04
7	GO:0010313: phytochrome binding	1.58E-04
8	GO:0003838: sterol 24-C-methyltransferase activity	1.58E-04
9	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.58E-04
10	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.58E-04
11	GO:0008252: nucleotidase activity	1.58E-04
12	GO:0016413: O-acetyltransferase activity	1.74E-04
13	GO:0080109: indole-3-acetonitrile nitrile hydratase activity	3.60E-04
14	GO:0042389: omega-3 fatty acid desaturase activity	3.60E-04
15	GO:0004047: aminomethyltransferase activity	3.60E-04
16	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.60E-04
17	GO:0004185: serine-type carboxypeptidase activity	5.17E-04
18	GO:0080061: indole-3-acetonitrile nitrilase activity	5.89E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.43E-04
20	GO:0003999: adenine phosphoribosyltransferase activity	8.43E-04
21	GO:0004550: nucleoside diphosphate kinase activity	8.43E-04
22	GO:0000257: nitrilase activity	8.43E-04
23	GO:0048027: mRNA 5'-UTR binding	8.43E-04
24	GO:0015204: urea transmembrane transporter activity	1.12E-03
25	GO:0010328: auxin influx transmembrane transporter activity	1.12E-03
26	GO:0019901: protein kinase binding	1.32E-03
27	GO:0016759: cellulose synthase activity	1.71E-03
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.74E-03
29	GO:0042578: phosphoric ester hydrolase activity	1.74E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.74E-03
31	GO:0015250: water channel activity	2.03E-03
32	GO:0051753: mannan synthase activity	2.09E-03
33	GO:0004564: beta-fructofuranosidase activity	2.84E-03
34	GO:0016757: transferase activity, transferring glycosyl groups	3.05E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.25E-03
36	GO:0004575: sucrose alpha-glucosidase activity	4.12E-03
37	GO:0004860: protein kinase inhibitor activity	5.05E-03
38	GO:0004089: carbonate dehydratase activity	6.06E-03
39	GO:0008083: growth factor activity	6.59E-03
40	GO:0004650: polygalacturonase activity	7.50E-03
41	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.69E-03
42	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.69E-03
43	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.69E-03
44	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.01E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.33E-02
46	GO:0004872: receptor activity	1.48E-02
47	GO:0004518: nuclease activity	1.63E-02
48	GO:0000156: phosphorelay response regulator activity	1.71E-02
49	GO:0051015: actin filament binding	1.71E-02
50	GO:0016791: phosphatase activity	1.78E-02
51	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.86E-02
52	GO:0005200: structural constituent of cytoskeleton	1.86E-02
53	GO:0008483: transaminase activity	1.86E-02
54	GO:0004672: protein kinase activity	2.17E-02
55	GO:0030247: polysaccharide binding	2.27E-02
56	GO:0102483: scopolin beta-glucosidase activity	2.27E-02
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.36E-02
58	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.62E-02
59	GO:0003993: acid phosphatase activity	2.98E-02
60	GO:0008422: beta-glucosidase activity	3.08E-02
61	GO:0004364: glutathione transferase activity	3.36E-02
62	GO:0015293: symporter activity	3.76E-02
63	GO:0015171: amino acid transmembrane transporter activity	4.60E-02
64	GO:0045330: aspartyl esterase activity	4.60E-02
65	GO:0045735: nutrient reservoir activity	4.82E-02
66	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	1.53E-06
2	GO:0005576: extracellular region	7.25E-06
3	GO:0009505: plant-type cell wall	1.05E-05
4	GO:0048046: apoplast	1.88E-05
5	GO:0005794: Golgi apparatus	7.73E-05
6	GO:0005618: cell wall	1.22E-04
7	GO:0042170: plastid membrane	3.60E-04
8	GO:0046658: anchored component of plasma membrane	5.58E-04
9	GO:0005775: vacuolar lumen	8.43E-04
10	GO:0042807: central vacuole	2.45E-03
11	GO:0000326: protein storage vacuole	3.25E-03
12	GO:0045298: tubulin complex	3.67E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.67E-03
14	GO:0055028: cortical microtubule	4.58E-03
15	GO:0048471: perinuclear region of cytoplasm	5.05E-03
16	GO:0000139: Golgi membrane	5.52E-03
17	GO:0030176: integral component of endoplasmic reticulum membrane	7.13E-03
18	GO:0005758: mitochondrial intermembrane space	8.27E-03
19	GO:0016021: integral component of membrane	1.30E-02
20	GO:0030529: intracellular ribonucleoprotein complex	2.02E-02
21	GO:0005886: plasma membrane	2.17E-02
22	GO:0005773: vacuole	2.17E-02
23	GO:0009534: chloroplast thylakoid	2.28E-02
24	GO:0009506: plasmodesma	2.32E-02
25	GO:0000325: plant-type vacuole	2.71E-02
26	GO:0000786: nucleosome	2.80E-02
27	GO:0031902: late endosome membrane	3.27E-02
28	GO:0009941: chloroplast envelope	4.58E-02