GO Enrichment Analysis of Co-expressed Genes with
AT4G25730
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 5 | GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine | 0.00E+00 |
| 6 | GO:0017126: nucleologenesis | 0.00E+00 |
| 7 | GO:0006099: tricarboxylic acid cycle | 3.86E-06 |
| 8 | GO:0000470: maturation of LSU-rRNA | 1.48E-05 |
| 9 | GO:0055081: anion homeostasis | 7.75E-05 |
| 10 | GO:0080120: CAAX-box protein maturation | 7.75E-05 |
| 11 | GO:0071586: CAAX-box protein processing | 7.75E-05 |
| 12 | GO:0006422: aspartyl-tRNA aminoacylation | 7.75E-05 |
| 13 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.85E-04 |
| 14 | GO:0010220: positive regulation of vernalization response | 1.85E-04 |
| 15 | GO:0010155: regulation of proton transport | 1.85E-04 |
| 16 | GO:0000162: tryptophan biosynthetic process | 2.04E-04 |
| 17 | GO:0046686: response to cadmium ion | 2.74E-04 |
| 18 | GO:0070475: rRNA base methylation | 3.11E-04 |
| 19 | GO:0006591: ornithine metabolic process | 3.11E-04 |
| 20 | GO:0008652: cellular amino acid biosynthetic process | 3.11E-04 |
| 21 | GO:0002230: positive regulation of defense response to virus by host | 3.11E-04 |
| 22 | GO:0071494: cellular response to UV-C | 3.11E-04 |
| 23 | GO:1902290: positive regulation of defense response to oomycetes | 4.49E-04 |
| 24 | GO:0000460: maturation of 5.8S rRNA | 5.98E-04 |
| 25 | GO:0046345: abscisic acid catabolic process | 5.98E-04 |
| 26 | GO:0033320: UDP-D-xylose biosynthetic process | 5.98E-04 |
| 27 | GO:0018279: protein N-linked glycosylation via asparagine | 7.57E-04 |
| 28 | GO:0045116: protein neddylation | 7.57E-04 |
| 29 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 9.24E-04 |
| 30 | GO:0010405: arabinogalactan protein metabolic process | 9.24E-04 |
| 31 | GO:0001731: formation of translation preinitiation complex | 9.24E-04 |
| 32 | GO:0042732: D-xylose metabolic process | 9.24E-04 |
| 33 | GO:0042026: protein refolding | 1.10E-03 |
| 34 | GO:0006458: 'de novo' protein folding | 1.10E-03 |
| 35 | GO:0009088: threonine biosynthetic process | 1.10E-03 |
| 36 | GO:1900057: positive regulation of leaf senescence | 1.29E-03 |
| 37 | GO:1900056: negative regulation of leaf senescence | 1.29E-03 |
| 38 | GO:0006102: isocitrate metabolic process | 1.48E-03 |
| 39 | GO:0006526: arginine biosynthetic process | 1.69E-03 |
| 40 | GO:0009699: phenylpropanoid biosynthetic process | 1.69E-03 |
| 41 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 2.14E-03 |
| 42 | GO:1900426: positive regulation of defense response to bacterium | 2.14E-03 |
| 43 | GO:0043069: negative regulation of programmed cell death | 2.37E-03 |
| 44 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.61E-03 |
| 45 | GO:0009414: response to water deprivation | 2.67E-03 |
| 46 | GO:0006541: glutamine metabolic process | 3.38E-03 |
| 47 | GO:0006446: regulation of translational initiation | 3.38E-03 |
| 48 | GO:0046688: response to copper ion | 3.66E-03 |
| 49 | GO:0070588: calcium ion transmembrane transport | 3.66E-03 |
| 50 | GO:0009225: nucleotide-sugar metabolic process | 3.66E-03 |
| 51 | GO:0006487: protein N-linked glycosylation | 4.23E-03 |
| 52 | GO:0006825: copper ion transport | 4.52E-03 |
| 53 | GO:0051302: regulation of cell division | 4.52E-03 |
| 54 | GO:0009735: response to cytokinin | 4.64E-03 |
| 55 | GO:0006334: nucleosome assembly | 4.82E-03 |
| 56 | GO:0061077: chaperone-mediated protein folding | 4.82E-03 |
| 57 | GO:0006413: translational initiation | 5.01E-03 |
| 58 | GO:0007131: reciprocal meiotic recombination | 5.13E-03 |
| 59 | GO:0007005: mitochondrion organization | 5.13E-03 |
| 60 | GO:0009617: response to bacterium | 6.40E-03 |
| 61 | GO:0008033: tRNA processing | 6.44E-03 |
| 62 | GO:0010501: RNA secondary structure unwinding | 6.44E-03 |
| 63 | GO:0006520: cellular amino acid metabolic process | 6.78E-03 |
| 64 | GO:0015986: ATP synthesis coupled proton transport | 7.13E-03 |
| 65 | GO:0010193: response to ozone | 7.85E-03 |
| 66 | GO:0080156: mitochondrial mRNA modification | 7.85E-03 |
| 67 | GO:0031047: gene silencing by RNA | 8.22E-03 |
| 68 | GO:0042254: ribosome biogenesis | 8.46E-03 |
| 69 | GO:0030163: protein catabolic process | 8.59E-03 |
| 70 | GO:0010252: auxin homeostasis | 8.97E-03 |
| 71 | GO:0006974: cellular response to DNA damage stimulus | 1.10E-02 |
| 72 | GO:0045454: cell redox homeostasis | 1.23E-02 |
| 73 | GO:0009407: toxin catabolic process | 1.31E-02 |
| 74 | GO:0007568: aging | 1.36E-02 |
| 75 | GO:0006281: DNA repair | 1.52E-02 |
| 76 | GO:0009651: response to salt stress | 1.72E-02 |
| 77 | GO:0000154: rRNA modification | 1.88E-02 |
| 78 | GO:0009636: response to toxic substance | 1.88E-02 |
| 79 | GO:0009965: leaf morphogenesis | 1.88E-02 |
| 80 | GO:0009664: plant-type cell wall organization | 2.04E-02 |
| 81 | GO:0006364: rRNA processing | 2.14E-02 |
| 82 | GO:0006486: protein glycosylation | 2.14E-02 |
| 83 | GO:0009909: regulation of flower development | 2.30E-02 |
| 84 | GO:0016569: covalent chromatin modification | 2.64E-02 |
| 85 | GO:0006396: RNA processing | 2.81E-02 |
| 86 | GO:0009790: embryo development | 3.61E-02 |
| 87 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.68E-02 |
| 88 | GO:0055114: oxidation-reduction process | 3.83E-02 |
| 89 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.40E-02 |
| 90 | GO:0006470: protein dephosphorylation | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 2 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 3 | GO:0016603: glutaminyl-peptide cyclotransferase activity | 0.00E+00 |
| 4 | GO:0050269: coniferyl-aldehyde dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004585: ornithine carbamoyltransferase activity | 0.00E+00 |
| 6 | GO:0005507: copper ion binding | 2.56E-07 |
| 7 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.31E-07 |
| 8 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.31E-07 |
| 9 | GO:0000166: nucleotide binding | 1.16E-06 |
| 10 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 9.69E-06 |
| 11 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.48E-05 |
| 12 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 7.35E-05 |
| 13 | GO:0008802: betaine-aldehyde dehydrogenase activity | 7.75E-05 |
| 14 | GO:0048037: cofactor binding | 7.75E-05 |
| 15 | GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity | 7.75E-05 |
| 16 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 7.75E-05 |
| 17 | GO:0004815: aspartate-tRNA ligase activity | 7.75E-05 |
| 18 | GO:0016743: carboxyl- or carbamoyltransferase activity | 1.85E-04 |
| 19 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 1.85E-04 |
| 20 | GO:0019781: NEDD8 activating enzyme activity | 1.85E-04 |
| 21 | GO:0043021: ribonucleoprotein complex binding | 1.85E-04 |
| 22 | GO:0005524: ATP binding | 2.39E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.11E-04 |
| 24 | GO:0004049: anthranilate synthase activity | 3.11E-04 |
| 25 | GO:0008469: histone-arginine N-methyltransferase activity | 3.11E-04 |
| 26 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.11E-04 |
| 27 | GO:0016531: copper chaperone activity | 3.11E-04 |
| 28 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 4.49E-04 |
| 29 | GO:0004072: aspartate kinase activity | 4.49E-04 |
| 30 | GO:0008276: protein methyltransferase activity | 4.49E-04 |
| 31 | GO:0008641: small protein activating enzyme activity | 7.57E-04 |
| 32 | GO:0016597: amino acid binding | 7.57E-04 |
| 33 | GO:0048040: UDP-glucuronate decarboxylase activity | 9.24E-04 |
| 34 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 9.24E-04 |
| 35 | GO:0070403: NAD+ binding | 1.10E-03 |
| 36 | GO:0004222: metalloendopeptidase activity | 1.13E-03 |
| 37 | GO:0030515: snoRNA binding | 1.29E-03 |
| 38 | GO:0008143: poly(A) binding | 1.29E-03 |
| 39 | GO:0043295: glutathione binding | 1.29E-03 |
| 40 | GO:0003678: DNA helicase activity | 1.91E-03 |
| 41 | GO:0004129: cytochrome-c oxidase activity | 2.61E-03 |
| 42 | GO:0001054: RNA polymerase I activity | 2.61E-03 |
| 43 | GO:0044183: protein binding involved in protein folding | 2.61E-03 |
| 44 | GO:0008378: galactosyltransferase activity | 2.86E-03 |
| 45 | GO:0005388: calcium-transporting ATPase activity | 3.12E-03 |
| 46 | GO:0000175: 3'-5'-exoribonuclease activity | 3.12E-03 |
| 47 | GO:0051082: unfolded protein binding | 3.12E-03 |
| 48 | GO:0008026: ATP-dependent helicase activity | 3.31E-03 |
| 49 | GO:0008266: poly(U) RNA binding | 3.38E-03 |
| 50 | GO:0004175: endopeptidase activity | 3.38E-03 |
| 51 | GO:0004386: helicase activity | 3.40E-03 |
| 52 | GO:0016491: oxidoreductase activity | 4.20E-03 |
| 53 | GO:0005528: FK506 binding | 4.23E-03 |
| 54 | GO:0003729: mRNA binding | 5.05E-03 |
| 55 | GO:0003743: translation initiation factor activity | 6.27E-03 |
| 56 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.78E-03 |
| 57 | GO:0004527: exonuclease activity | 6.78E-03 |
| 58 | GO:0010181: FMN binding | 7.13E-03 |
| 59 | GO:0004806: triglyceride lipase activity | 1.14E-02 |
| 60 | GO:0004004: ATP-dependent RNA helicase activity | 1.14E-02 |
| 61 | GO:0050897: cobalt ion binding | 1.36E-02 |
| 62 | GO:0003746: translation elongation factor activity | 1.45E-02 |
| 63 | GO:0003697: single-stranded DNA binding | 1.45E-02 |
| 64 | GO:0042393: histone binding | 1.59E-02 |
| 65 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.59E-02 |
| 66 | GO:0004364: glutathione transferase activity | 1.68E-02 |
| 67 | GO:0043621: protein self-association | 1.83E-02 |
| 68 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.93E-02 |
| 69 | GO:0051287: NAD binding | 1.98E-02 |
| 70 | GO:0003723: RNA binding | 2.07E-02 |
| 71 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.14E-02 |
| 72 | GO:0015035: protein disulfide oxidoreductase activity | 2.81E-02 |
| 73 | GO:0016758: transferase activity, transferring hexosyl groups | 3.17E-02 |
| 74 | GO:0016829: lyase activity | 3.42E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0019034: viral replication complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 2.04E-10 |
| 4 | GO:0005829: cytosol | 1.61E-08 |
| 5 | GO:0008250: oligosaccharyltransferase complex | 9.69E-06 |
| 6 | GO:0032783: ELL-EAF complex | 7.75E-05 |
| 7 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.04E-04 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.73E-04 |
| 9 | GO:0070545: PeBoW complex | 1.85E-04 |
| 10 | GO:0005901: caveola | 1.85E-04 |
| 11 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 5.98E-04 |
| 12 | GO:0005746: mitochondrial respiratory chain | 7.57E-04 |
| 13 | GO:0016282: eukaryotic 43S preinitiation complex | 9.24E-04 |
| 14 | GO:0031428: box C/D snoRNP complex | 9.24E-04 |
| 15 | GO:0033290: eukaryotic 48S preinitiation complex | 1.10E-03 |
| 16 | GO:0016272: prefoldin complex | 1.10E-03 |
| 17 | GO:0031595: nuclear proteasome complex | 1.29E-03 |
| 18 | GO:0030687: preribosome, large subunit precursor | 1.29E-03 |
| 19 | GO:0005774: vacuolar membrane | 1.37E-03 |
| 20 | GO:0045273: respiratory chain complex II | 1.48E-03 |
| 21 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.48E-03 |
| 22 | GO:0005736: DNA-directed RNA polymerase I complex | 1.91E-03 |
| 23 | GO:0000502: proteasome complex | 2.21E-03 |
| 24 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.61E-03 |
| 25 | GO:0005747: mitochondrial respiratory chain complex I | 2.69E-03 |
| 26 | GO:0005834: heterotrimeric G-protein complex | 2.77E-03 |
| 27 | GO:0032040: small-subunit processome | 2.86E-03 |
| 28 | GO:0009507: chloroplast | 3.31E-03 |
| 29 | GO:0005750: mitochondrial respiratory chain complex III | 3.38E-03 |
| 30 | GO:0030176: integral component of endoplasmic reticulum membrane | 3.66E-03 |
| 31 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 3.66E-03 |
| 32 | GO:0043234: protein complex | 3.94E-03 |
| 33 | GO:0005758: mitochondrial intermembrane space | 4.23E-03 |
| 34 | GO:0005759: mitochondrial matrix | 4.89E-03 |
| 35 | GO:0005789: endoplasmic reticulum membrane | 5.26E-03 |
| 36 | GO:0009506: plasmodesma | 6.67E-03 |
| 37 | GO:0005737: cytoplasm | 8.25E-03 |
| 38 | GO:0032580: Golgi cisterna membrane | 8.97E-03 |
| 39 | GO:0005773: vacuole | 1.07E-02 |
| 40 | GO:0022625: cytosolic large ribosomal subunit | 1.08E-02 |
| 41 | GO:0005739: mitochondrion | 1.10E-02 |
| 42 | GO:0005840: ribosome | 1.35E-02 |
| 43 | GO:0005783: endoplasmic reticulum | 1.71E-02 |
| 44 | GO:0005618: cell wall | 2.21E-02 |
| 45 | GO:0005654: nucleoplasm | 3.17E-02 |
| 46 | GO:0009705: plant-type vacuole membrane | 4.06E-02 |
| 47 | GO:0009570: chloroplast stroma | 4.60E-02 |
| 48 | GO:0046658: anchored component of plasma membrane | 4.95E-02 |