Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010203: response to very low fluence red light stimulus0.00E+00
2GO:0012502: induction of programmed cell death0.00E+00
3GO:0010378: temperature compensation of the circadian clock0.00E+00
4GO:0010161: red light signaling pathway5.50E-06
5GO:0009638: phototropism1.51E-05
6GO:0032958: inositol phosphate biosynthetic process2.76E-05
7GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.76E-05
8GO:0010362: negative regulation of anion channel activity by blue light2.76E-05
9GO:0080173: male-female gamete recognition during double fertilization2.76E-05
10GO:0009585: red, far-red light phototransduction2.97E-05
11GO:0097054: L-glutamate biosynthetic process7.01E-05
12GO:0010155: regulation of proton transport7.01E-05
13GO:0010017: red or far-red light signaling pathway7.33E-05
14GO:0009789: positive regulation of abscisic acid-activated signaling pathway9.77E-05
15GO:0007623: circadian rhythm1.16E-04
16GO:0017006: protein-tetrapyrrole linkage1.23E-04
17GO:0006537: glutamate biosynthetic process1.83E-04
18GO:0006020: inositol metabolic process1.83E-04
19GO:0009584: detection of visible light1.83E-04
20GO:0010029: regulation of seed germination2.29E-04
21GO:0006646: phosphatidylethanolamine biosynthetic process2.48E-04
22GO:0019676: ammonia assimilation cycle2.48E-04
23GO:0010600: regulation of auxin biosynthetic process2.48E-04
24GO:0010508: positive regulation of autophagy2.48E-04
25GO:0018298: protein-chromophore linkage2.84E-04
26GO:0009817: defense response to fungus, incompatible interaction2.84E-04
27GO:0080167: response to karrikin2.86E-04
28GO:0000160: phosphorelay signal transduction system2.99E-04
29GO:0010218: response to far red light3.14E-04
30GO:0009904: chloroplast accumulation movement3.18E-04
31GO:0048578: positive regulation of long-day photoperiodism, flowering3.18E-04
32GO:0009637: response to blue light3.60E-04
33GO:0042542: response to hydrogen peroxide4.45E-04
34GO:0017148: negative regulation of translation4.69E-04
35GO:0009903: chloroplast avoidance movement4.69E-04
36GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.69E-04
37GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.69E-04
38GO:0009704: de-etiolation6.32E-04
39GO:0010928: regulation of auxin mediated signaling pathway6.32E-04
40GO:0006506: GPI anchor biosynthetic process6.32E-04
41GO:0009827: plant-type cell wall modification7.18E-04
42GO:0001510: RNA methylation7.18E-04
43GO:0048589: developmental growth8.07E-04
44GO:0046685: response to arsenic-containing substance8.07E-04
45GO:0048354: mucilage biosynthetic process involved in seed coat development8.99E-04
46GO:0009738: abscisic acid-activated signaling pathway9.27E-04
47GO:0035556: intracellular signal transduction1.03E-03
48GO:0016485: protein processing1.09E-03
49GO:0009785: blue light signaling pathway1.29E-03
50GO:0009266: response to temperature stimulus1.40E-03
51GO:0019853: L-ascorbic acid biosynthetic process1.50E-03
52GO:0009739: response to gibberellin1.62E-03
53GO:0061077: chaperone-mediated protein folding1.97E-03
54GO:0019748: secondary metabolic process2.09E-03
55GO:0006012: galactose metabolic process2.22E-03
56GO:0006970: response to osmotic stress2.39E-03
57GO:0042752: regulation of circadian rhythm2.88E-03
58GO:0008654: phospholipid biosynthetic process3.02E-03
59GO:0009630: gravitropism3.31E-03
60GO:0006914: autophagy3.60E-03
61GO:0009567: double fertilization forming a zygote and endosperm3.60E-03
62GO:0009408: response to heat4.03E-03
63GO:0042128: nitrate assimilation4.38E-03
64GO:0006950: response to stress4.54E-03
65GO:0010119: regulation of stomatal movement5.38E-03
66GO:0009737: response to abscisic acid6.05E-03
67GO:0009640: photomorphogenesis6.82E-03
68GO:0009644: response to high light intensity7.20E-03
69GO:0006812: cation transport7.99E-03
70GO:0006857: oligopeptide transport8.81E-03
71GO:0006457: protein folding9.22E-03
72GO:0009553: embryo sac development1.05E-02
73GO:0009414: response to water deprivation1.41E-02
74GO:0006633: fatty acid biosynthetic process1.48E-02
75GO:0006413: translational initiation1.51E-02
76GO:0010228: vegetative to reproductive phase transition of meristem1.63E-02
77GO:0009409: response to cold1.96E-02
78GO:0005975: carbohydrate metabolic process2.20E-02
79GO:0009723: response to ethylene2.39E-02
80GO:0046777: protein autophosphorylation2.64E-02
81GO:0045892: negative regulation of transcription, DNA-templated2.89E-02
82GO:0006468: protein phosphorylation3.09E-02
83GO:0006355: regulation of transcription, DNA-templated4.55E-02
84GO:0009908: flower development4.65E-02
85GO:0009735: response to cytokinin4.68E-02
86GO:0009651: response to salt stress4.84E-02
RankGO TermAdjusted P value
1GO:0016040: glutamate synthase (NADH) activity0.00E+00
2GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0031516: far-red light photoreceptor activity2.76E-05
5GO:0033857: diphosphoinositol-pentakisphosphate kinase activity2.76E-05
6GO:0000829: inositol heptakisphosphate kinase activity2.76E-05
7GO:0000828: inositol hexakisphosphate kinase activity2.76E-05
8GO:0000155: phosphorelay sensor kinase activity3.08E-05
9GO:0004565: beta-galactosidase activity3.08E-05
10GO:0009883: red or far-red light photoreceptor activity7.01E-05
11GO:0004609: phosphatidylserine decarboxylase activity7.01E-05
12GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.01E-05
13GO:0004672: protein kinase activity8.76E-05
14GO:0008020: G-protein coupled photoreceptor activity1.23E-04
15GO:0010181: FMN binding1.25E-04
16GO:0009882: blue light photoreceptor activity1.83E-04
17GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.18E-04
18GO:0051538: 3 iron, 4 sulfur cluster binding3.18E-04
19GO:0015562: efflux transmembrane transporter activity3.92E-04
20GO:0004033: aldo-keto reductase (NADP) activity6.32E-04
21GO:0004673: protein histidine kinase activity9.92E-04
22GO:0004175: endopeptidase activity1.40E-03
23GO:0042802: identical protein binding1.83E-03
24GO:0008324: cation transmembrane transporter activity1.85E-03
25GO:0051087: chaperone binding1.85E-03
26GO:0042803: protein homodimerization activity3.43E-03
27GO:0000156: phosphorelay response regulator activity3.45E-03
28GO:0004674: protein serine/threonine kinase activity3.98E-03
29GO:0005515: protein binding4.75E-03
30GO:0004185: serine-type carboxypeptidase activity6.82E-03
31GO:0016740: transferase activity8.68E-03
32GO:0031625: ubiquitin protein ligase binding9.01E-03
33GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups9.65E-03
34GO:0016874: ligase activity1.03E-02
35GO:0004252: serine-type endopeptidase activity1.36E-02
36GO:0003743: translation initiation factor activity1.77E-02
37GO:0008168: methyltransferase activity2.10E-02
38GO:0003729: mRNA binding2.16E-02
39GO:0050660: flavin adenine dinucleotide binding2.39E-02
40GO:0016301: kinase activity2.53E-02
41GO:0004871: signal transducer activity2.95E-02
RankGO TermAdjusted P value
1GO:0009898: cytoplasmic side of plasma membrane2.48E-04
2GO:0005851: eukaryotic translation initiation factor 2B complex3.92E-04
3GO:0009986: cell surface5.49E-04
4GO:0016604: nuclear body8.99E-04
5GO:0000151: ubiquitin ligase complex4.87E-03
6GO:0016607: nuclear speck9.65E-03
7GO:0005654: nucleoplasm1.24E-02
8GO:0005618: cell wall1.33E-02
9GO:0009505: plant-type cell wall1.81E-02
10GO:0005737: cytoplasm1.85E-02
11GO:0005773: vacuole1.93E-02
Gene type



Gene DE type