co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0070584: mitochondrion morphogenesis	0.00E+00
6	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
7	GO:0009877: nodulation	0.00E+00
8	GO:0042906: xanthine transport	0.00E+00
9	GO:0010378: temperature compensation of the circadian clock	0.00E+00
10	GO:0090279: regulation of calcium ion import	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.19E-20
12	GO:0018298: protein-chromophore linkage	7.27E-13
13	GO:0015979: photosynthesis	1.20E-11
14	GO:0009645: response to low light intensity stimulus	2.04E-08
15	GO:0007623: circadian rhythm	4.80E-08
16	GO:0010218: response to far red light	9.98E-08
17	GO:0010114: response to red light	3.54E-07
18	GO:0009409: response to cold	3.73E-07
19	GO:0009644: response to high light intensity	4.53E-07
20	GO:0009769: photosynthesis, light harvesting in photosystem II	2.78E-06
21	GO:0009637: response to blue light	4.29E-06
22	GO:0009416: response to light stimulus	2.11E-05
23	GO:0010196: nonphotochemical quenching	1.64E-04
24	GO:0015812: gamma-aminobutyric acid transport	2.34E-04
25	GO:0032958: inositol phosphate biosynthetic process	2.34E-04
26	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.34E-04
27	GO:0009609: response to symbiotic bacterium	2.34E-04
28	GO:0015995: chlorophyll biosynthetic process	4.90E-04
29	GO:0015720: allantoin transport	5.20E-04
30	GO:0051262: protein tetramerization	5.20E-04
31	GO:0006883: cellular sodium ion homeostasis	5.20E-04
32	GO:0051170: nuclear import	5.20E-04
33	GO:0015857: uracil transport	5.20E-04
34	GO:1902884: positive regulation of response to oxidative stress	5.20E-04
35	GO:0030259: lipid glycosylation	5.20E-04
36	GO:0009414: response to water deprivation	6.83E-04
37	GO:1901562: response to paraquat	8.44E-04
38	GO:1902448: positive regulation of shade avoidance	8.44E-04
39	GO:0006598: polyamine catabolic process	8.44E-04
40	GO:0071705: nitrogen compound transport	8.44E-04
41	GO:0042542: response to hydrogen peroxide	9.79E-04
42	GO:0008643: carbohydrate transport	1.13E-03
43	GO:0071786: endoplasmic reticulum tubular network organization	1.20E-03
44	GO:0006020: inositol metabolic process	1.20E-03
45	GO:0010601: positive regulation of auxin biosynthetic process	1.20E-03
46	GO:0044211: CTP salvage	1.20E-03
47	GO:0031936: negative regulation of chromatin silencing	1.20E-03
48	GO:1901332: negative regulation of lateral root development	1.20E-03
49	GO:0048511: rhythmic process	1.21E-03
50	GO:0009269: response to desiccation	1.21E-03
51	GO:0009737: response to abscisic acid	1.22E-03
52	GO:0010017: red or far-red light signaling pathway	1.33E-03
53	GO:0042538: hyperosmotic salinity response	1.37E-03
54	GO:0009765: photosynthesis, light harvesting	1.61E-03
55	GO:2000306: positive regulation of photomorphogenesis	1.61E-03
56	GO:0010600: regulation of auxin biosynthetic process	1.61E-03
57	GO:1901002: positive regulation of response to salt stress	1.61E-03
58	GO:0030104: water homeostasis	1.61E-03
59	GO:0044206: UMP salvage	1.61E-03
60	GO:0006970: response to osmotic stress	1.83E-03
61	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.05E-03
62	GO:0016123: xanthophyll biosynthetic process	2.05E-03
63	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.05E-03
64	GO:0043097: pyrimidine nucleoside salvage	2.05E-03
65	GO:0080167: response to karrikin	2.27E-03
66	GO:0000302: response to reactive oxygen species	2.43E-03
67	GO:0009635: response to herbicide	2.52E-03
68	GO:0045962: positive regulation of development, heterochronic	2.52E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	2.52E-03
70	GO:1900425: negative regulation of defense response to bacterium	2.52E-03
71	GO:1901657: glycosyl compound metabolic process	2.77E-03
72	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.03E-03
73	GO:0010555: response to mannitol	3.03E-03
74	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.03E-03
75	GO:0010286: heat acclimation	3.12E-03
76	GO:0016126: sterol biosynthetic process	3.51E-03
77	GO:1902074: response to salt	3.58E-03
78	GO:0010038: response to metal ion	3.58E-03
79	GO:0010161: red light signaling pathway	3.58E-03
80	GO:0007050: cell cycle arrest	3.58E-03
81	GO:0048437: floral organ development	3.58E-03
82	GO:0080111: DNA demethylation	3.58E-03
83	GO:0010029: regulation of seed germination	3.71E-03
84	GO:0055085: transmembrane transport	3.82E-03
85	GO:0009408: response to heat	4.10E-03
86	GO:0009415: response to water	4.15E-03
87	GO:0009704: de-etiolation	4.15E-03
88	GO:0010928: regulation of auxin mediated signaling pathway	4.15E-03
89	GO:0010099: regulation of photomorphogenesis	4.74E-03
90	GO:0009827: plant-type cell wall modification	4.74E-03
91	GO:0007186: G-protein coupled receptor signaling pathway	4.74E-03
92	GO:0000160: phosphorelay signal transduction system	4.80E-03
93	GO:0009631: cold acclimation	5.28E-03
94	GO:0090333: regulation of stomatal closure	5.37E-03
95	GO:0006810: transport	5.39E-03
96	GO:0016051: carbohydrate biosynthetic process	5.79E-03
97	GO:0005982: starch metabolic process	6.03E-03
98	GO:0030042: actin filament depolymerization	6.03E-03
99	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.03E-03
100	GO:2000280: regulation of root development	6.03E-03
101	GO:0009688: abscisic acid biosynthetic process	6.71E-03
102	GO:0009641: shade avoidance	6.71E-03
103	GO:0010162: seed dormancy process	6.71E-03
104	GO:0055062: phosphate ion homeostasis	6.71E-03
105	GO:0051707: response to other organism	7.46E-03
106	GO:0009640: photomorphogenesis	7.46E-03
107	GO:0016925: protein sumoylation	8.17E-03
108	GO:0009735: response to cytokinin	8.55E-03
109	GO:0050826: response to freezing	8.93E-03
110	GO:0009718: anthocyanin-containing compound biosynthetic process	8.93E-03
111	GO:0009767: photosynthetic electron transport chain	8.93E-03
112	GO:0006355: regulation of transcription, DNA-templated	9.38E-03
113	GO:0007015: actin filament organization	9.72E-03
114	GO:0009266: response to temperature stimulus	9.72E-03
115	GO:0010207: photosystem II assembly	9.72E-03
116	GO:0009651: response to salt stress	9.98E-03
117	GO:0009585: red, far-red light phototransduction	1.01E-02
118	GO:0090351: seedling development	1.05E-02
119	GO:0019853: L-ascorbic acid biosynthetic process	1.05E-02
120	GO:0035556: intracellular signal transduction	1.06E-02
121	GO:0044550: secondary metabolite biosynthetic process	1.19E-02
122	GO:0016575: histone deacetylation	1.31E-02
123	GO:0006874: cellular calcium ion homeostasis	1.31E-02
124	GO:0003333: amino acid transmembrane transport	1.40E-02
125	GO:0010431: seed maturation	1.40E-02
126	GO:0061077: chaperone-mediated protein folding	1.40E-02
127	GO:0009624: response to nematode	1.44E-02
128	GO:0035428: hexose transmembrane transport	1.50E-02
129	GO:0006012: galactose metabolic process	1.59E-02
130	GO:0071215: cellular response to abscisic acid stimulus	1.59E-02
131	GO:0009686: gibberellin biosynthetic process	1.59E-02
132	GO:0010214: seed coat development	1.69E-02
133	GO:0045492: xylan biosynthetic process	1.69E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.79E-02
135	GO:0008284: positive regulation of cell proliferation	1.79E-02
136	GO:0042631: cellular response to water deprivation	1.89E-02
137	GO:0009845: seed germination	1.95E-02
138	GO:0010182: sugar mediated signaling pathway	1.99E-02
139	GO:0046323: glucose import	1.99E-02
140	GO:0006814: sodium ion transport	2.10E-02
141	GO:0042752: regulation of circadian rhythm	2.10E-02
142	GO:0009556: microsporogenesis	2.20E-02
143	GO:0006351: transcription, DNA-templated	2.23E-02
144	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.31E-02
145	GO:0016125: sterol metabolic process	2.65E-02
146	GO:0010468: regulation of gene expression	2.97E-02
147	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.13E-02
148	GO:0006974: cellular response to DNA damage stimulus	3.25E-02
149	GO:0048573: photoperiodism, flowering	3.38E-02
150	GO:0006888: ER to Golgi vesicle-mediated transport	3.38E-02
151	GO:0009738: abscisic acid-activated signaling pathway	3.46E-02
152	GO:0009817: defense response to fungus, incompatible interaction	3.63E-02
153	GO:0009611: response to wounding	3.70E-02
154	GO:0009813: flavonoid biosynthetic process	3.76E-02
155	GO:0009658: chloroplast organization	3.85E-02
156	GO:0006811: ion transport	3.89E-02
157	GO:0007568: aging	4.03E-02
158	GO:0010119: regulation of stomatal movement	4.03E-02
159	GO:0007049: cell cycle	4.29E-02
160	GO:0009723: response to ethylene	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
6	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0090711: FMN hydrolase activity	0.00E+00
11	GO:0004567: beta-mannosidase activity	0.00E+00
12	GO:0080082: esculin beta-glucosidase activity	0.00E+00
13	GO:0031409: pigment binding	6.13E-19
14	GO:0016168: chlorophyll binding	3.61E-15
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.34E-04
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.34E-04
17	GO:0016906: sterol 3-beta-glucosyltransferase activity	2.34E-04
18	GO:0000829: inositol heptakisphosphate kinase activity	2.34E-04
19	GO:0005227: calcium activated cation channel activity	2.34E-04
20	GO:0080079: cellobiose glucosidase activity	2.34E-04
21	GO:0102203: brassicasterol glucosyltransferase activity	2.34E-04
22	GO:0102202: soladodine glucosyltransferase activity	2.34E-04
23	GO:0000828: inositol hexakisphosphate kinase activity	2.34E-04
24	GO:0015180: L-alanine transmembrane transporter activity	5.20E-04
25	GO:0005274: allantoin uptake transmembrane transporter activity	5.20E-04
26	GO:0047216: inositol 3-alpha-galactosyltransferase activity	5.20E-04
27	GO:0016630: protochlorophyllide reductase activity	5.20E-04
28	GO:0046592: polyamine oxidase activity	8.44E-04
29	GO:0019948: SUMO activating enzyme activity	8.44E-04
30	GO:0005215: transporter activity	8.99E-04
31	GO:0015189: L-lysine transmembrane transporter activity	1.20E-03
32	GO:0000254: C-4 methylsterol oxidase activity	1.20E-03
33	GO:0015181: arginine transmembrane transporter activity	1.20E-03
34	GO:0004707: MAP kinase activity	1.21E-03
35	GO:0005253: anion channel activity	1.61E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	1.61E-03
37	GO:0015210: uracil transmembrane transporter activity	1.61E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	1.61E-03
39	GO:0004930: G-protein coupled receptor activity	1.61E-03
40	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.05E-03
41	GO:0005247: voltage-gated chloride channel activity	2.52E-03
42	GO:2001070: starch binding	2.52E-03
43	GO:0004629: phospholipase C activity	2.52E-03
44	GO:0015562: efflux transmembrane transporter activity	2.52E-03
45	GO:0000156: phosphorelay response regulator activity	2.77E-03
46	GO:0005515: protein binding	2.90E-03
47	GO:0004435: phosphatidylinositol phospholipase C activity	3.03E-03
48	GO:0005261: cation channel activity	3.03E-03
49	GO:0004849: uridine kinase activity	3.03E-03
50	GO:0102483: scopolin beta-glucosidase activity	4.13E-03
51	GO:0004564: beta-fructofuranosidase activity	4.15E-03
52	GO:0005337: nucleoside transmembrane transporter activity	4.15E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	4.15E-03
54	GO:0005351: sugar:proton symporter activity	4.54E-03
55	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.74E-03
56	GO:0046872: metal ion binding	5.04E-03
57	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.37E-03
58	GO:0071949: FAD binding	5.37E-03
59	GO:0000989: transcription factor activity, transcription factor binding	5.37E-03
60	GO:0004575: sucrose alpha-glucosidase activity	6.03E-03
61	GO:0009672: auxin:proton symporter activity	6.03E-03
62	GO:0008422: beta-glucosidase activity	6.32E-03
63	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.71E-03
64	GO:0044183: protein binding involved in protein folding	7.43E-03
65	GO:0047372: acylglycerol lipase activity	7.43E-03
66	GO:0005198: structural molecule activity	8.39E-03
67	GO:0004022: alcohol dehydrogenase (NAD) activity	8.93E-03
68	GO:0005315: inorganic phosphate transmembrane transporter activity	8.93E-03
69	GO:0004565: beta-galactosidase activity	8.93E-03
70	GO:0008131: primary amine oxidase activity	9.72E-03
71	GO:0004970: ionotropic glutamate receptor activity	1.05E-02
72	GO:0003712: transcription cofactor activity	1.05E-02
73	GO:0005217: intracellular ligand-gated ion channel activity	1.05E-02
74	GO:0015171: amino acid transmembrane transporter activity	1.12E-02
75	GO:0016787: hydrolase activity	1.13E-02
76	GO:0051536: iron-sulfur cluster binding	1.22E-02
77	GO:0004407: histone deacetylase activity	1.22E-02
78	GO:0005216: ion channel activity	1.31E-02
79	GO:0008324: cation transmembrane transporter activity	1.31E-02
80	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.40E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	1.59E-02
82	GO:0008514: organic anion transmembrane transporter activity	1.69E-02
83	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.85E-02
84	GO:0008536: Ran GTPase binding	1.99E-02
85	GO:0005355: glucose transmembrane transporter activity	2.10E-02
86	GO:0015144: carbohydrate transmembrane transporter activity	2.16E-02
87	GO:0015297: antiporter activity	2.38E-02
88	GO:0005506: iron ion binding	2.75E-02
89	GO:0008375: acetylglucosaminyltransferase activity	3.25E-02
90	GO:0003677: DNA binding	3.41E-02
91	GO:0008168: methyltransferase activity	3.71E-02
92	GO:0003682: chromatin binding	4.07E-02
93	GO:0003993: acid phosphatase activity	4.43E-02
94	GO:0042393: histone binding	4.71E-02
95	GO:0004497: monooxygenase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.39E-16
3	GO:0030076: light-harvesting complex	1.08E-14
4	GO:0010287: plastoglobule	3.90E-13
5	GO:0009534: chloroplast thylakoid	1.40E-12
6	GO:0009535: chloroplast thylakoid membrane	1.45E-10
7	GO:0009579: thylakoid	3.02E-10
8	GO:0009941: chloroplast envelope	6.30E-10
9	GO:0016021: integral component of membrane	3.48E-08
10	GO:0009523: photosystem II	3.34E-07
11	GO:0009517: PSII associated light-harvesting complex II	3.85E-05
12	GO:0042651: thylakoid membrane	7.50E-05
13	GO:0043036: starch grain	5.20E-04
14	GO:0016020: membrane	6.84E-04
15	GO:0071782: endoplasmic reticulum tubular network	1.20E-03
16	GO:0009507: chloroplast	1.52E-03
17	GO:0009898: cytoplasmic side of plasma membrane	1.61E-03
18	GO:0032586: protein storage vacuole membrane	1.61E-03
19	GO:0030127: COPII vesicle coat	2.52E-03
20	GO:0034707: chloride channel complex	2.52E-03
21	GO:0009533: chloroplast stromal thylakoid	3.58E-03
22	GO:0009538: photosystem I reaction center	4.15E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.15E-03
24	GO:0000326: protein storage vacuole	4.74E-03
25	GO:0010494: cytoplasmic stress granule	5.37E-03
26	GO:0015629: actin cytoskeleton	1.59E-02
27	GO:0005622: intracellular	2.32E-02
28	GO:0005774: vacuolar membrane	2.80E-02
29	GO:0000932: P-body	3.01E-02
30	GO:0005667: transcription factor complex	3.25E-02
31	GO:0009707: chloroplast outer membrane	3.63E-02
32	GO:0005777: peroxisome	4.27E-02
33	GO:0031969: chloroplast membrane	4.76E-02