Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine0.00E+00
2GO:0071433: cell wall repair0.00E+00
3GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
4GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
5GO:1990258: histone glutamine methylation0.00E+00
6GO:0046686: response to cadmium ion1.34E-06
7GO:0031167: rRNA methylation6.21E-06
8GO:0000470: maturation of LSU-rRNA9.58E-06
9GO:0001510: RNA methylation3.22E-05
10GO:0055081: anion homeostasis5.94E-05
11GO:0048448: stamen morphogenesis5.94E-05
12GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine5.94E-05
13GO:0010450: inflorescence meristem growth5.94E-05
14GO:0006364: rRNA processing1.31E-04
15GO:0015865: purine nucleotide transport1.44E-04
16GO:0010220: positive regulation of vernalization response1.44E-04
17GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.44E-04
18GO:0055129: L-proline biosynthetic process1.44E-04
19GO:0048833: specification of floral organ number1.44E-04
20GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.44E-04
21GO:0070475: rRNA base methylation2.46E-04
22GO:0008652: cellular amino acid biosynthetic process2.46E-04
23GO:0008033: tRNA processing3.00E-04
24GO:0046902: regulation of mitochondrial membrane permeability3.57E-04
25GO:0009855: determination of bilateral symmetry3.57E-04
26GO:0000460: maturation of 5.8S rRNA4.78E-04
27GO:0042273: ribosomal large subunit biogenesis4.78E-04
28GO:0031365: N-terminal protein amino acid modification6.05E-04
29GO:0006561: proline biosynthetic process7.40E-04
30GO:0010405: arabinogalactan protein metabolic process7.40E-04
31GO:0018258: protein O-linked glycosylation via hydroxyproline7.40E-04
32GO:0009088: threonine biosynthetic process8.82E-04
33GO:0006099: tricarboxylic acid cycle9.67E-04
34GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.03E-03
35GO:1900056: negative regulation of leaf senescence1.03E-03
36GO:0080186: developmental vegetative growth1.03E-03
37GO:0006605: protein targeting1.18E-03
38GO:0050821: protein stabilization1.18E-03
39GO:0031540: regulation of anthocyanin biosynthetic process1.18E-03
40GO:0006102: isocitrate metabolic process1.18E-03
41GO:0009880: embryonic pattern specification1.35E-03
42GO:0046685: response to arsenic-containing substance1.52E-03
43GO:0009051: pentose-phosphate shunt, oxidative branch1.52E-03
44GO:0006412: translation1.52E-03
45GO:0048354: mucilage biosynthetic process involved in seed coat development1.69E-03
46GO:0043069: negative regulation of programmed cell death1.88E-03
47GO:0010162: seed dormancy process1.88E-03
48GO:0009089: lysine biosynthetic process via diaminopimelate2.07E-03
49GO:0016485: protein processing2.07E-03
50GO:0006626: protein targeting to mitochondrion2.47E-03
51GO:0006006: glucose metabolic process2.47E-03
52GO:0070588: calcium ion transmembrane transport2.89E-03
53GO:0009944: polarity specification of adaxial/abaxial axis3.34E-03
54GO:0007005: mitochondrion organization4.05E-03
55GO:0009294: DNA mediated transformation4.30E-03
56GO:0009625: response to insect4.30E-03
57GO:0042631: cellular response to water deprivation5.07E-03
58GO:0010197: polar nucleus fusion5.34E-03
59GO:0009960: endosperm development5.34E-03
60GO:0015986: ATP synthesis coupled proton transport5.61E-03
61GO:0009646: response to absence of light5.61E-03
62GO:0042254: ribosome biogenesis5.98E-03
63GO:0000302: response to reactive oxygen species6.17E-03
64GO:0032502: developmental process6.46E-03
65GO:0030163: protein catabolic process6.75E-03
66GO:0010286: heat acclimation7.35E-03
67GO:0001666: response to hypoxia7.97E-03
68GO:0009615: response to virus7.97E-03
69GO:0009627: systemic acquired resistance8.60E-03
70GO:0009651: response to salt stress1.01E-02
71GO:0009407: toxin catabolic process1.03E-02
72GO:0032259: methylation1.03E-02
73GO:0010043: response to zinc ion1.06E-02
74GO:0009408: response to heat1.07E-02
75GO:0008283: cell proliferation1.35E-02
76GO:0051707: response to other organism1.35E-02
77GO:0000154: rRNA modification1.47E-02
78GO:0009636: response to toxic substance1.47E-02
79GO:0009965: leaf morphogenesis1.47E-02
80GO:0006486: protein glycosylation1.67E-02
81GO:0010224: response to UV-B1.71E-02
82GO:0009909: regulation of flower development1.80E-02
83GO:0016569: covalent chromatin modification2.06E-02
84GO:0009553: embryo sac development2.10E-02
85GO:0009845: seed germination2.67E-02
86GO:0009790: embryo development2.81E-02
87GO:0006413: translational initiation3.02E-02
88GO:0010150: leaf senescence3.17E-02
89GO:0009451: RNA modification3.22E-02
90GO:0006470: protein dephosphorylation3.49E-02
91GO:0009414: response to water deprivation3.77E-02
92GO:0042742: defense response to bacterium3.86E-02
93GO:0006979: response to oxidative stress3.89E-02
94GO:0009723: response to ethylene4.80E-02
95GO:0015031: protein transport4.89E-02
RankGO TermAdjusted P value
1GO:1990259: histone-glutamine methyltransferase activity0.00E+00
2GO:0004164: diphthine synthase activity0.00E+00
3GO:0004735: pyrroline-5-carboxylate reductase activity0.00E+00
4GO:0030515: snoRNA binding9.61E-08
5GO:0008649: rRNA methyltransferase activity7.95E-07
6GO:0005507: copper ion binding1.14E-06
7GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity5.94E-05
8GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity5.94E-05
9GO:0004776: succinate-CoA ligase (GDP-forming) activity1.44E-04
10GO:0043021: ribonucleoprotein complex binding1.44E-04
11GO:0004775: succinate-CoA ligase (ADP-forming) activity1.44E-04
12GO:0003735: structural constituent of ribosome2.15E-04
13GO:0008469: histone-arginine N-methyltransferase activity2.46E-04
14GO:0004148: dihydrolipoyl dehydrogenase activity2.46E-04
15GO:0004072: aspartate kinase activity3.57E-04
16GO:0008276: protein methyltransferase activity3.57E-04
17GO:0004449: isocitrate dehydrogenase (NAD+) activity3.57E-04
18GO:0004345: glucose-6-phosphate dehydrogenase activity4.78E-04
19GO:0005471: ATP:ADP antiporter activity6.05E-04
20GO:0030976: thiamine pyrophosphate binding7.40E-04
21GO:1990714: hydroxyproline O-galactosyltransferase activity7.40E-04
22GO:0050897: cobalt ion binding8.51E-04
23GO:0004017: adenylate kinase activity8.82E-04
24GO:0005524: ATP binding9.94E-04
25GO:0043295: glutathione binding1.03E-03
26GO:0008235: metalloexopeptidase activity1.03E-03
27GO:0004177: aminopeptidase activity2.07E-03
28GO:0008378: galactosyltransferase activity2.27E-03
29GO:0008026: ATP-dependent helicase activity2.35E-03
30GO:0005388: calcium-transporting ATPase activity2.47E-03
31GO:0008266: poly(U) RNA binding2.68E-03
32GO:0000166: nucleotide binding3.33E-03
33GO:0004407: histone deacetylase activity3.34E-03
34GO:0004298: threonine-type endopeptidase activity3.81E-03
35GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.34E-03
36GO:0008168: methyltransferase activity5.65E-03
37GO:0008233: peptidase activity7.14E-03
38GO:0008237: metallopeptidase activity7.35E-03
39GO:0016597: amino acid binding7.65E-03
40GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.59E-03
41GO:0003723: RNA binding1.13E-02
42GO:0050661: NADP binding1.24E-02
43GO:0004364: glutathione transferase activity1.32E-02
44GO:0051287: NAD binding1.55E-02
45GO:0051082: unfolded protein binding2.15E-02
46GO:0016758: transferase activity, transferring hexosyl groups2.47E-02
47GO:0003743: translation initiation factor activity3.54E-02
48GO:0000287: magnesium ion binding4.27E-02
49GO:0050660: flavin adenine dinucleotide binding4.80E-02
RankGO TermAdjusted P value
1GO:0005730: nucleolus2.44E-11
2GO:0031428: box C/D snoRNP complex3.27E-08
3GO:0032040: small-subunit processome1.01E-06
4GO:0005759: mitochondrial matrix2.89E-05
5GO:0015030: Cajal body4.94E-05
6GO:0070545: PeBoW complex1.44E-04
7GO:0005758: mitochondrial intermembrane space1.58E-04
8GO:0005739: mitochondrion2.17E-04
9GO:0005840: ribosome3.33E-04
10GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.78E-04
11GO:0015934: large ribosomal subunit8.51E-04
12GO:0080008: Cul4-RING E3 ubiquitin ligase complex8.59E-04
13GO:0030687: preribosome, large subunit precursor1.03E-03
14GO:0022625: cytosolic large ribosomal subunit1.06E-03
15GO:0019773: proteasome core complex, alpha-subunit complex1.35E-03
16GO:0005773: vacuole1.57E-03
17GO:0005740: mitochondrial envelope1.88E-03
18GO:0005747: mitochondrial respiratory chain complex I1.91E-03
19GO:0005834: heterotrimeric G-protein complex1.97E-03
20GO:0005852: eukaryotic translation initiation factor 3 complex2.07E-03
21GO:0005829: cytosol2.15E-03
22GO:0005753: mitochondrial proton-transporting ATP synthase complex2.89E-03
23GO:0022626: cytosolic ribosome3.15E-03
24GO:0005618: cell wall3.47E-03
25GO:0070469: respiratory chain3.57E-03
26GO:0005839: proteasome core complex3.81E-03
27GO:0016592: mediator complex6.46E-03
28GO:0005743: mitochondrial inner membrane9.98E-03
29GO:0005774: vacuolar membrane1.06E-02
30GO:0000502: proteasome complex1.67E-02
31GO:0005654: nucleoplasm2.47E-02
32GO:0005623: cell2.57E-02
33GO:0009705: plant-type vacuole membrane3.17E-02
34GO:0022627: cytosolic small ribosomal subunit3.87E-02
35GO:0048046: apoplast4.13E-02
Gene type



Gene DE type