co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0010206: photosystem II repair	6.37E-06
5	GO:0009773: photosynthetic electron transport in photosystem I	1.48E-05
6	GO:0051513: regulation of monopolar cell growth	1.69E-05
7	GO:0015995: chlorophyll biosynthetic process	2.80E-05
8	GO:0010207: photosystem II assembly	2.86E-05
9	GO:0009913: epidermal cell differentiation	7.36E-05
10	GO:0042549: photosystem II stabilization	7.36E-05
11	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.72E-05
12	GO:0009664: plant-type cell wall organization	1.33E-04
13	GO:0009772: photosynthetic electron transport in photosystem II	1.35E-04
14	GO:0034337: RNA folding	2.06E-04
15	GO:0009828: plant-type cell wall loosening	2.47E-04
16	GO:0010205: photoinhibition	3.11E-04
17	GO:0015979: photosynthesis	4.24E-04
18	GO:0006898: receptor-mediated endocytosis	4.62E-04
19	GO:0035304: regulation of protein dephosphorylation	4.62E-04
20	GO:0010541: acropetal auxin transport	4.62E-04
21	GO:0001736: establishment of planar polarity	4.62E-04
22	GO:0016024: CDP-diacylglycerol biosynthetic process	4.85E-04
23	GO:0045490: pectin catabolic process	6.45E-04
24	GO:0010160: formation of animal organ boundary	7.52E-04
25	GO:0090391: granum assembly	7.52E-04
26	GO:0016045: detection of bacterium	7.52E-04
27	GO:0010359: regulation of anion channel activity	7.52E-04
28	GO:0080055: low-affinity nitrate transport	7.52E-04
29	GO:0045493: xylan catabolic process	7.52E-04
30	GO:0006636: unsaturated fatty acid biosynthetic process	7.70E-04
31	GO:0009926: auxin polar transport	8.26E-04
32	GO:0007017: microtubule-based process	9.35E-04
33	GO:0080170: hydrogen peroxide transmembrane transport	1.07E-03
34	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.07E-03
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.07E-03
36	GO:1901332: negative regulation of lateral root development	1.07E-03
37	GO:0071484: cellular response to light intensity	1.07E-03
38	GO:0009734: auxin-activated signaling pathway	1.22E-03
39	GO:0030104: water homeostasis	1.43E-03
40	GO:0042335: cuticle development	1.54E-03
41	GO:0080022: primary root development	1.54E-03
42	GO:0034220: ion transmembrane transport	1.54E-03
43	GO:0009958: positive gravitropism	1.66E-03
44	GO:0030308: negative regulation of cell growth	1.81E-03
45	GO:0048497: maintenance of floral organ identity	1.81E-03
46	GO:0010438: cellular response to sulfur starvation	1.81E-03
47	GO:0009416: response to light stimulus	1.83E-03
48	GO:0009624: response to nematode	1.86E-03
49	GO:0048825: cotyledon development	1.91E-03
50	GO:0009228: thiamine biosynthetic process	2.24E-03
51	GO:0006655: phosphatidylglycerol biosynthetic process	2.24E-03
52	GO:0060918: auxin transport	2.24E-03
53	GO:0009759: indole glucosinolate biosynthetic process	2.24E-03
54	GO:0006751: glutathione catabolic process	2.24E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.24E-03
56	GO:1901259: chloroplast rRNA processing	2.69E-03
57	GO:0009942: longitudinal axis specification	2.69E-03
58	GO:0010196: nonphotochemical quenching	3.16E-03
59	GO:1900057: positive regulation of leaf senescence	3.16E-03
60	GO:0006633: fatty acid biosynthetic process	3.30E-03
61	GO:0010311: lateral root formation	4.01E-03
62	GO:0005975: carbohydrate metabolic process	4.02E-03
63	GO:0007389: pattern specification process	4.20E-03
64	GO:0009245: lipid A biosynthetic process	4.75E-03
65	GO:0006783: heme biosynthetic process	4.75E-03
66	GO:0009637: response to blue light	4.84E-03
67	GO:0009638: phototropism	5.32E-03
68	GO:0006782: protoporphyrinogen IX biosynthetic process	5.93E-03
69	GO:0048829: root cap development	5.93E-03
70	GO:0006949: syncytium formation	5.93E-03
71	GO:0009826: unidimensional cell growth	6.17E-03
72	GO:0052544: defense response by callose deposition in cell wall	6.55E-03
73	GO:0019684: photosynthesis, light reaction	6.55E-03
74	GO:1903507: negative regulation of nucleic acid-templated transcription	6.55E-03
75	GO:0048765: root hair cell differentiation	6.55E-03
76	GO:0010015: root morphogenesis	6.55E-03
77	GO:0002213: defense response to insect	7.20E-03
78	GO:0008361: regulation of cell size	7.20E-03
79	GO:0009733: response to auxin	7.71E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	7.87E-03
81	GO:0009785: blue light signaling pathway	7.87E-03
82	GO:0010628: positive regulation of gene expression	7.87E-03
83	GO:0009718: anthocyanin-containing compound biosynthetic process	7.87E-03
84	GO:0006094: gluconeogenesis	7.87E-03
85	GO:0010143: cutin biosynthetic process	8.56E-03
86	GO:0010540: basipetal auxin transport	8.56E-03
87	GO:0006857: oligopeptide transport	9.00E-03
88	GO:0010030: positive regulation of seed germination	9.27E-03
89	GO:0000162: tryptophan biosynthetic process	1.00E-02
90	GO:0006833: water transport	1.00E-02
91	GO:0016114: terpenoid biosynthetic process	1.23E-02
92	GO:0003333: amino acid transmembrane transport	1.23E-02
93	GO:0048511: rhythmic process	1.23E-02
94	GO:0035428: hexose transmembrane transport	1.32E-02
95	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.32E-02
96	GO:0016042: lipid catabolic process	1.35E-02
97	GO:0071369: cellular response to ethylene stimulus	1.40E-02
98	GO:0048443: stamen development	1.48E-02
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.57E-02
100	GO:0009845: seed germination	1.63E-02
101	GO:0042631: cellular response to water deprivation	1.66E-02
102	GO:0010087: phloem or xylem histogenesis	1.66E-02
103	GO:0010305: leaf vascular tissue pattern formation	1.75E-02
104	GO:0046323: glucose import	1.75E-02
105	GO:0015986: ATP synthesis coupled proton transport	1.84E-02
106	GO:0042752: regulation of circadian rhythm	1.84E-02
107	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.03E-02
108	GO:0000302: response to reactive oxygen species	2.03E-02
109	GO:0007623: circadian rhythm	2.08E-02
110	GO:0010583: response to cyclopentenone	2.13E-02
111	GO:0016032: viral process	2.13E-02
112	GO:0042742: defense response to bacterium	2.15E-02
113	GO:0071555: cell wall organization	2.15E-02
114	GO:0030163: protein catabolic process	2.23E-02
115	GO:0010252: auxin homeostasis	2.33E-02
116	GO:0009639: response to red or far red light	2.33E-02
117	GO:0007166: cell surface receptor signaling pathway	2.38E-02
118	GO:0071805: potassium ion transmembrane transport	2.43E-02
119	GO:0051607: defense response to virus	2.54E-02
120	GO:0009735: response to cytokinin	2.58E-02
121	GO:0010027: thylakoid membrane organization	2.64E-02
122	GO:0009627: systemic acquired resistance	2.86E-02
123	GO:0010411: xyloglucan metabolic process	2.97E-02
124	GO:0048573: photoperiodism, flowering	2.97E-02
125	GO:0010218: response to far red light	3.42E-02
126	GO:0045893: positive regulation of transcription, DNA-templated	3.42E-02
127	GO:0009631: cold acclimation	3.54E-02
128	GO:0048527: lateral root development	3.54E-02
129	GO:0006865: amino acid transport	3.66E-02
130	GO:0055085: transmembrane transport	3.87E-02
131	GO:0034599: cellular response to oxidative stress	3.90E-02
132	GO:0080167: response to karrikin	3.98E-02
133	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.12E-02
134	GO:0030001: metal ion transport	4.15E-02
135	GO:0009640: photomorphogenesis	4.52E-02
136	GO:0010114: response to red light	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0030570: pectate lyase activity	8.72E-05
5	GO:0010242: oxygen evolving activity	2.06E-04
6	GO:0004853: uroporphyrinogen decarboxylase activity	2.06E-04
7	GO:0045485: omega-6 fatty acid desaturase activity	2.06E-04
8	GO:0016829: lyase activity	4.44E-04
9	GO:0003839: gamma-glutamylcyclotransferase activity	4.62E-04
10	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.62E-04
11	GO:0004312: fatty acid synthase activity	4.62E-04
12	GO:0010329: auxin efflux transmembrane transporter activity	5.50E-04
13	GO:0090729: toxin activity	7.52E-04
14	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.52E-04
15	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.52E-04
16	GO:0005528: FK506 binding	8.52E-04
17	GO:0016851: magnesium chelatase activity	1.07E-03
18	GO:0010328: auxin influx transmembrane transporter activity	1.43E-03
19	GO:0009044: xylan 1,4-beta-xylosidase activity	1.43E-03
20	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.43E-03
21	GO:0046556: alpha-L-arabinofuranosidase activity	1.43E-03
22	GO:0010011: auxin binding	1.43E-03
23	GO:0004130: cytochrome-c peroxidase activity	2.24E-03
24	GO:0035673: oligopeptide transmembrane transporter activity	2.24E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.24E-03
26	GO:0042578: phosphoric ester hydrolase activity	2.24E-03
27	GO:0031177: phosphopantetheine binding	2.24E-03
28	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.24E-03
29	GO:0004332: fructose-bisphosphate aldolase activity	2.24E-03
30	GO:0005200: structural constituent of cytoskeleton	2.62E-03
31	GO:0016832: aldehyde-lyase activity	2.69E-03
32	GO:0004017: adenylate kinase activity	2.69E-03
33	GO:0000035: acyl binding	2.69E-03
34	GO:0015250: water channel activity	2.93E-03
35	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.40E-03
36	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.67E-03
37	GO:0005096: GTPase activator activity	4.01E-03
38	GO:0008289: lipid binding	5.14E-03
39	GO:0009672: auxin:proton symporter activity	5.32E-03
40	GO:0008794: arsenate reductase (glutaredoxin) activity	6.55E-03
41	GO:0047372: acylglycerol lipase activity	6.55E-03
42	GO:0016788: hydrolase activity, acting on ester bonds	6.64E-03
43	GO:0015198: oligopeptide transporter activity	7.20E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.27E-03
45	GO:0004565: beta-galactosidase activity	7.87E-03
46	GO:0031072: heat shock protein binding	7.87E-03
47	GO:0008266: poly(U) RNA binding	8.56E-03
48	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.56E-03
49	GO:0052689: carboxylic ester hydrolase activity	9.68E-03
50	GO:0003714: transcription corepressor activity	1.08E-02
51	GO:0004650: polygalacturonase activity	1.09E-02
52	GO:0004871: signal transducer activity	1.14E-02
53	GO:0015079: potassium ion transmembrane transporter activity	1.15E-02
54	GO:0016746: transferase activity, transferring acyl groups	1.23E-02
55	GO:0004176: ATP-dependent peptidase activity	1.23E-02
56	GO:0005515: protein binding	1.34E-02
57	GO:0003756: protein disulfide isomerase activity	1.48E-02
58	GO:0004252: serine-type endopeptidase activity	1.67E-02
59	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.75E-02
60	GO:0005355: glucose transmembrane transporter activity	1.84E-02
61	GO:0004518: nuclease activity	2.13E-02
62	GO:0016791: phosphatase activity	2.33E-02
63	GO:0016597: amino acid binding	2.54E-02
64	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-02
65	GO:0016168: chlorophyll binding	2.75E-02
66	GO:0008236: serine-type peptidase activity	3.08E-02
67	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.54E-02
68	GO:0003746: translation elongation factor activity	3.78E-02
69	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.02E-02
70	GO:0016301: kinase activity	4.34E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-02
72	GO:0015293: symporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	1.02E-13
3	GO:0009534: chloroplast thylakoid	3.79E-13
4	GO:0009535: chloroplast thylakoid membrane	3.53E-09
5	GO:0009543: chloroplast thylakoid lumen	6.25E-09
6	GO:0009570: chloroplast stroma	1.39E-08
7	GO:0009579: thylakoid	1.93E-08
8	GO:0009941: chloroplast envelope	4.14E-07
9	GO:0031977: thylakoid lumen	4.25E-06
10	GO:0030095: chloroplast photosystem II	2.86E-05
11	GO:0043674: columella	2.06E-04
12	GO:0009515: granal stacked thylakoid	2.06E-04
13	GO:0016020: membrane	2.75E-04
14	GO:0030093: chloroplast photosystem I	4.62E-04
15	GO:0009508: plastid chromosome	5.50E-04
16	GO:0010007: magnesium chelatase complex	7.52E-04
17	GO:0009654: photosystem II oxygen evolving complex	9.35E-04
18	GO:0015630: microtubule cytoskeleton	1.07E-03
19	GO:0009531: secondary cell wall	1.07E-03
20	GO:0019898: extrinsic component of membrane	1.91E-03
21	GO:0005886: plasma membrane	2.16E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.24E-03
23	GO:0010287: plastoglobule	2.31E-03
24	GO:0009295: nucleoid	2.62E-03
25	GO:0009505: plant-type cell wall	2.76E-03
26	GO:0042807: central vacuole	3.16E-03
27	GO:0009986: cell surface	3.16E-03
28	GO:0009533: chloroplast stromal thylakoid	3.16E-03
29	GO:0005618: cell wall	3.48E-03
30	GO:0042644: chloroplast nucleoid	4.75E-03
31	GO:0045298: tubulin complex	4.75E-03
32	GO:0008180: COP9 signalosome	4.75E-03
33	GO:0055028: cortical microtubule	5.93E-03
34	GO:0032040: small-subunit processome	7.20E-03
35	GO:0016602: CCAAT-binding factor complex	7.87E-03
36	GO:0005874: microtubule	8.16E-03
37	GO:0009706: chloroplast inner membrane	1.20E-02
38	GO:0005576: extracellular region	1.37E-02
39	GO:0009522: photosystem I	1.84E-02
40	GO:0009523: photosystem II	1.94E-02
41	GO:0005887: integral component of plasma membrane	2.06E-02
42	GO:0010319: stromule	2.43E-02
43	GO:0019005: SCF ubiquitin ligase complex	3.19E-02
44	GO:0031969: chloroplast membrane	3.98E-02
45	GO:0031225: anchored component of membrane	4.97E-02