co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
4	GO:0046677: response to antibiotic	0.00E+00
5	GO:0090279: regulation of calcium ion import	0.00E+00
6	GO:0015717: triose phosphate transport	0.00E+00
7	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
10	GO:0070584: mitochondrion morphogenesis	0.00E+00
11	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
12	GO:0015979: photosynthesis	1.95E-09
13	GO:0009768: photosynthesis, light harvesting in photosystem I	4.34E-09
14	GO:0010114: response to red light	2.75E-08
15	GO:0015995: chlorophyll biosynthetic process	2.01E-07
16	GO:0018298: protein-chromophore linkage	2.67E-07
17	GO:0009645: response to low light intensity stimulus	6.60E-07
18	GO:0010218: response to far red light	1.18E-05
19	GO:0009416: response to light stimulus	1.26E-05
20	GO:0009637: response to blue light	1.58E-05
21	GO:0009769: photosynthesis, light harvesting in photosystem II	6.70E-05
22	GO:0055114: oxidation-reduction process	8.30E-05
23	GO:0051262: protein tetramerization	3.03E-04
24	GO:0009915: phloem sucrose loading	3.03E-04
25	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.03E-04
26	GO:0009644: response to high light intensity	4.12E-04
27	GO:1902448: positive regulation of shade avoidance	4.99E-04
28	GO:0035436: triose phosphate transmembrane transport	4.99E-04
29	GO:0009269: response to desiccation	5.61E-04
30	GO:0080167: response to karrikin	6.63E-04
31	GO:0044211: CTP salvage	7.14E-04
32	GO:0009765: photosynthesis, light harvesting	9.47E-04
33	GO:2000306: positive regulation of photomorphogenesis	9.47E-04
34	GO:0010600: regulation of auxin biosynthetic process	9.47E-04
35	GO:0015713: phosphoglycerate transport	9.47E-04
36	GO:0044206: UMP salvage	9.47E-04
37	GO:0015846: polyamine transport	9.47E-04
38	GO:0030104: water homeostasis	9.47E-04
39	GO:0042938: dipeptide transport	9.47E-04
40	GO:0043097: pyrimidine nucleoside salvage	1.20E-03
41	GO:0016123: xanthophyll biosynthetic process	1.20E-03
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.47E-03
43	GO:0045962: positive regulation of development, heterochronic	1.47E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	1.47E-03
45	GO:0006655: phosphatidylglycerol biosynthetic process	1.47E-03
46	GO:0009643: photosynthetic acclimation	1.47E-03
47	GO:0007623: circadian rhythm	1.67E-03
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
49	GO:0010189: vitamin E biosynthetic process	1.76E-03
50	GO:1900056: negative regulation of leaf senescence	2.06E-03
51	GO:0080186: developmental vegetative growth	2.06E-03
52	GO:0010196: nonphotochemical quenching	2.06E-03
53	GO:0051510: regulation of unidimensional cell growth	2.06E-03
54	GO:0010161: red light signaling pathway	2.06E-03
55	GO:0009910: negative regulation of flower development	2.37E-03
56	GO:0010928: regulation of auxin mediated signaling pathway	2.39E-03
57	GO:0009642: response to light intensity	2.39E-03
58	GO:0009704: de-etiolation	2.39E-03
59	GO:0050821: protein stabilization	2.39E-03
60	GO:0010099: regulation of photomorphogenesis	2.73E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	2.73E-03
62	GO:0009658: chloroplast organization	2.90E-03
63	GO:0048507: meristem development	3.08E-03
64	GO:0010206: photosystem II repair	3.08E-03
65	GO:0090333: regulation of stomatal closure	3.08E-03
66	GO:0009640: photomorphogenesis	3.32E-03
67	GO:0010380: regulation of chlorophyll biosynthetic process	3.46E-03
68	GO:0042761: very long-chain fatty acid biosynthetic process	3.46E-03
69	GO:0008356: asymmetric cell division	3.46E-03
70	GO:0009688: abscisic acid biosynthetic process	3.84E-03
71	GO:0009641: shade avoidance	3.84E-03
72	GO:0006949: syncytium formation	3.84E-03
73	GO:0046777: protein autophosphorylation	4.15E-03
74	GO:0046856: phosphatidylinositol dephosphorylation	4.24E-03
75	GO:0009698: phenylpropanoid metabolic process	4.24E-03
76	GO:0015770: sucrose transport	4.24E-03
77	GO:0043085: positive regulation of catalytic activity	4.24E-03
78	GO:0030148: sphingolipid biosynthetic process	4.24E-03
79	GO:0016024: CDP-diacylglycerol biosynthetic process	4.65E-03
80	GO:0015706: nitrate transport	4.65E-03
81	GO:0009909: regulation of flower development	4.95E-03
82	GO:0018107: peptidyl-threonine phosphorylation	5.08E-03
83	GO:0009718: anthocyanin-containing compound biosynthetic process	5.08E-03
84	GO:0010207: photosystem II assembly	5.52E-03
85	GO:0009887: animal organ morphogenesis	5.52E-03
86	GO:0005985: sucrose metabolic process	5.97E-03
87	GO:0090351: seedling development	5.97E-03
88	GO:0006629: lipid metabolic process	6.24E-03
89	GO:0009624: response to nematode	6.35E-03
90	GO:0006636: unsaturated fatty acid biosynthetic process	6.43E-03
91	GO:0006289: nucleotide-excision repair	6.91E-03
92	GO:0006874: cellular calcium ion homeostasis	7.40E-03
93	GO:0003333: amino acid transmembrane transport	7.91E-03
94	GO:0048511: rhythmic process	7.91E-03
95	GO:0010017: red or far-red light signaling pathway	8.42E-03
96	GO:0071215: cellular response to abscisic acid stimulus	8.95E-03
97	GO:0010089: xylem development	9.49E-03
98	GO:0070417: cellular response to cold	1.00E-02
99	GO:0010150: leaf senescence	1.10E-02
100	GO:0010305: leaf vascular tissue pattern formation	1.12E-02
101	GO:0006662: glycerol ether metabolic process	1.12E-02
102	GO:0010182: sugar mediated signaling pathway	1.12E-02
103	GO:0009741: response to brassinosteroid	1.12E-02
104	GO:0010228: vegetative to reproductive phase transition of meristem	1.15E-02
105	GO:0006814: sodium ion transport	1.18E-02
106	GO:0009791: post-embryonic development	1.24E-02
107	GO:0008654: phospholipid biosynthetic process	1.24E-02
108	GO:0016032: viral process	1.36E-02
109	GO:1901657: glycosyl compound metabolic process	1.42E-02
110	GO:0009828: plant-type cell wall loosening	1.49E-02
111	GO:0009826: unidimensional cell growth	1.64E-02
112	GO:0006970: response to osmotic stress	1.84E-02
113	GO:0048573: photoperiodism, flowering	1.89E-02
114	GO:0016311: dephosphorylation	1.96E-02
115	GO:0009723: response to ethylene	1.97E-02
116	GO:0006351: transcription, DNA-templated	2.15E-02
117	GO:0006811: ion transport	2.18E-02
118	GO:0010119: regulation of stomatal movement	2.25E-02
119	GO:0044550: secondary metabolite biosynthetic process	2.30E-02
120	GO:0006865: amino acid transport	2.33E-02
121	GO:0034599: cellular response to oxidative stress	2.48E-02
122	GO:0045454: cell redox homeostasis	2.53E-02
123	GO:0051707: response to other organism	2.88E-02
124	GO:0009965: leaf morphogenesis	3.13E-02
125	GO:0048364: root development	3.26E-02
126	GO:0006812: cation transport	3.39E-02
127	GO:0009664: plant-type cell wall organization	3.39E-02
128	GO:0009585: red, far-red light phototransduction	3.56E-02
129	GO:0006355: regulation of transcription, DNA-templated	3.58E-02
130	GO:0006857: oligopeptide transport	3.74E-02
131	GO:0043086: negative regulation of catalytic activity	4.01E-02
132	GO:0009409: response to cold	4.56E-02
133	GO:0018105: peptidyl-serine phosphorylation	4.67E-02
134	GO:0009742: brassinosteroid mediated signaling pathway	4.77E-02
135	GO:0009651: response to salt stress	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
7	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
8	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
9	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
10	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
11	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
12	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
13	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
14	GO:0031409: pigment binding	2.36E-09
15	GO:0016168: chlorophyll binding	1.49E-07
16	GO:0046872: metal ion binding	6.33E-05
17	GO:0005227: calcium activated cation channel activity	1.31E-04
18	GO:0080079: cellobiose glucosidase activity	1.31E-04
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.31E-04
20	GO:0052631: sphingolipid delta-8 desaturase activity	1.31E-04
21	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.31E-04
22	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.31E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.03E-04
24	GO:0016630: protochlorophyllide reductase activity	3.03E-04
25	GO:0008728: GTP diphosphokinase activity	3.03E-04
26	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.03E-04
27	GO:0004180: carboxypeptidase activity	4.99E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.99E-04
29	GO:0016805: dipeptidase activity	4.99E-04
30	GO:0071917: triose-phosphate transmembrane transporter activity	4.99E-04
31	GO:0015203: polyamine transmembrane transporter activity	7.14E-04
32	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.14E-04
33	GO:0042936: dipeptide transporter activity	9.47E-04
34	GO:0004930: G-protein coupled receptor activity	9.47E-04
35	GO:0070628: proteasome binding	9.47E-04
36	GO:0015120: phosphoglycerate transmembrane transporter activity	9.47E-04
37	GO:0004845: uracil phosphoribosyltransferase activity	9.47E-04
38	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.20E-03
39	GO:0051538: 3 iron, 4 sulfur cluster binding	1.20E-03
40	GO:0004605: phosphatidate cytidylyltransferase activity	1.47E-03
41	GO:0031593: polyubiquitin binding	1.47E-03
42	GO:0004462: lactoylglutathione lyase activity	1.47E-03
43	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.47E-03
44	GO:0015297: antiporter activity	1.57E-03
45	GO:0005261: cation channel activity	1.76E-03
46	GO:0009927: histidine phosphotransfer kinase activity	1.76E-03
47	GO:0004849: uridine kinase activity	1.76E-03
48	GO:0004602: glutathione peroxidase activity	1.76E-03
49	GO:0008506: sucrose:proton symporter activity	2.06E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.73E-03
51	GO:0071949: FAD binding	3.08E-03
52	GO:0000989: transcription factor activity, transcription factor binding	3.08E-03
53	GO:0015174: basic amino acid transmembrane transporter activity	3.46E-03
54	GO:0051537: 2 iron, 2 sulfur cluster binding	3.59E-03
55	GO:0015293: symporter activity	3.73E-03
56	GO:0008047: enzyme activator activity	3.84E-03
57	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.84E-03
58	GO:0008515: sucrose transmembrane transporter activity	4.24E-03
59	GO:0047372: acylglycerol lipase activity	4.24E-03
60	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.65E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	5.08E-03
62	GO:0005315: inorganic phosphate transmembrane transporter activity	5.08E-03
63	GO:0005217: intracellular ligand-gated ion channel activity	5.97E-03
64	GO:0003712: transcription cofactor activity	5.97E-03
65	GO:0004970: ionotropic glutamate receptor activity	5.97E-03
66	GO:0004190: aspartic-type endopeptidase activity	5.97E-03
67	GO:0015035: protein disulfide oxidoreductase activity	6.54E-03
68	GO:0043130: ubiquitin binding	6.91E-03
69	GO:0005216: ion channel activity	7.40E-03
70	GO:0016787: hydrolase activity	7.80E-03
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.17E-03
72	GO:0008514: organic anion transmembrane transporter activity	9.49E-03
73	GO:0003727: single-stranded RNA binding	9.49E-03
74	GO:0008289: lipid binding	9.50E-03
75	GO:0015144: carbohydrate transmembrane transporter activity	9.52E-03
76	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.69E-03
77	GO:0047134: protein-disulfide reductase activity	1.00E-02
78	GO:0005351: sugar:proton symporter activity	1.07E-02
79	GO:0004791: thioredoxin-disulfide reductase activity	1.18E-02
80	GO:0048038: quinone binding	1.30E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.42E-02
82	GO:0003684: damaged DNA binding	1.49E-02
83	GO:0102483: scopolin beta-glucosidase activity	1.89E-02
84	GO:0003993: acid phosphatase activity	2.48E-02
85	GO:0008270: zinc ion binding	2.50E-02
86	GO:0008422: beta-glucosidase activity	2.56E-02
87	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
88	GO:0003677: DNA binding	3.08E-02
89	GO:0005506: iron ion binding	3.08E-02
90	GO:0004674: protein serine/threonine kinase activity	3.23E-02
91	GO:0005215: transporter activity	3.56E-02
92	GO:0016298: lipase activity	3.65E-02
93	GO:0015171: amino acid transmembrane transporter activity	3.83E-02
94	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.29E-02
95	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.29E-02
96	GO:0016874: ligase activity	4.39E-02
97	GO:0016491: oxidoreductase activity	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	5.11E-10
2	GO:0009534: chloroplast thylakoid	6.96E-10
3	GO:0009941: chloroplast envelope	5.98E-09
4	GO:0010287: plastoglobule	1.29E-08
5	GO:0009522: photosystem I	3.02E-08
6	GO:0009517: PSII associated light-harvesting complex II	5.05E-08
7	GO:0030076: light-harvesting complex	1.77E-07
8	GO:0009507: chloroplast	1.62E-06
9	GO:0009579: thylakoid	2.14E-06
10	GO:0009523: photosystem II	6.86E-05
11	GO:0009783: photosystem II antenna complex	1.31E-04
12	GO:0016021: integral component of membrane	2.48E-04
13	GO:0042651: thylakoid membrane	5.12E-04
14	GO:0016020: membrane	8.63E-04
15	GO:0030660: Golgi-associated vesicle membrane	9.47E-04
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.47E-04
17	GO:0009533: chloroplast stromal thylakoid	2.06E-03
18	GO:0009538: photosystem I reaction center	2.39E-03
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.39E-03
20	GO:0031969: chloroplast membrane	3.81E-03
21	GO:0005765: lysosomal membrane	4.24E-03
22	GO:0009706: chloroplast inner membrane	6.35E-03
23	GO:0009570: chloroplast stroma	7.15E-03
24	GO:0005789: endoplasmic reticulum membrane	1.57E-02
25	GO:0009707: chloroplast outer membrane	2.03E-02
26	GO:0031977: thylakoid lumen	2.72E-02
27	GO:0016607: nuclear speck	4.11E-02
28	GO:0010008: endosome membrane	4.11E-02
29	GO:0005887: integral component of plasma membrane	4.23E-02