GO Enrichment Analysis of Co-expressed Genes with
AT4G24540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010425: DNA methylation on cytosine within a CNG sequence | 0.00E+00 |
| 2 | GO:0009264: deoxyribonucleotide catabolic process | 0.00E+00 |
| 3 | GO:0015822: ornithine transport | 0.00E+00 |
| 4 | GO:1901038: cyanidin 3-O-glucoside metabolic process | 0.00E+00 |
| 5 | GO:0010423: negative regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 6 | GO:0080167: response to karrikin | 3.75E-09 |
| 7 | GO:0051555: flavonol biosynthetic process | 6.73E-08 |
| 8 | GO:0009813: flavonoid biosynthetic process | 6.40E-07 |
| 9 | GO:0010218: response to far red light | 7.30E-07 |
| 10 | GO:0045489: pectin biosynthetic process | 2.71E-06 |
| 11 | GO:0071555: cell wall organization | 4.70E-06 |
| 12 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.08E-05 |
| 13 | GO:0010114: response to red light | 4.53E-05 |
| 14 | GO:0009411: response to UV | 5.09E-05 |
| 15 | GO:0010224: response to UV-B | 8.48E-05 |
| 16 | GO:0051973: positive regulation of telomerase activity | 1.60E-04 |
| 17 | GO:0000066: mitochondrial ornithine transport | 1.60E-04 |
| 18 | GO:0016119: carotene metabolic process | 1.60E-04 |
| 19 | GO:1901537: positive regulation of DNA demethylation | 1.60E-04 |
| 20 | GO:0031539: positive regulation of anthocyanin metabolic process | 1.60E-04 |
| 21 | GO:0050691: regulation of defense response to virus by host | 1.60E-04 |
| 22 | GO:0000272: polysaccharide catabolic process | 2.97E-04 |
| 23 | GO:0009698: phenylpropanoid metabolic process | 2.97E-04 |
| 24 | GO:1900386: positive regulation of flavonol biosynthetic process | 3.65E-04 |
| 25 | GO:0071395: cellular response to jasmonic acid stimulus | 3.65E-04 |
| 26 | GO:0071712: ER-associated misfolded protein catabolic process | 3.65E-04 |
| 27 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 3.65E-04 |
| 28 | GO:0019388: galactose catabolic process | 3.65E-04 |
| 29 | GO:0007154: cell communication | 3.65E-04 |
| 30 | GO:0010253: UDP-rhamnose biosynthetic process | 5.97E-04 |
| 31 | GO:0040009: regulation of growth rate | 5.97E-04 |
| 32 | GO:0006651: diacylglycerol biosynthetic process | 5.97E-04 |
| 33 | GO:0006556: S-adenosylmethionine biosynthetic process | 5.97E-04 |
| 34 | GO:0031347: regulation of defense response | 6.72E-04 |
| 35 | GO:0010017: red or far-red light signaling pathway | 7.98E-04 |
| 36 | GO:0009743: response to carbohydrate | 8.53E-04 |
| 37 | GO:0042823: pyridoxal phosphate biosynthetic process | 8.53E-04 |
| 38 | GO:0009590: detection of gravity | 8.53E-04 |
| 39 | GO:0009909: regulation of flower development | 8.73E-04 |
| 40 | GO:0000271: polysaccharide biosynthetic process | 1.09E-03 |
| 41 | GO:0034613: cellular protein localization | 1.13E-03 |
| 42 | GO:0009765: photosynthesis, light harvesting | 1.13E-03 |
| 43 | GO:0051567: histone H3-K9 methylation | 1.13E-03 |
| 44 | GO:0006342: chromatin silencing | 1.17E-03 |
| 45 | GO:0009958: positive gravitropism | 1.17E-03 |
| 46 | GO:0016123: xanthophyll biosynthetic process | 1.43E-03 |
| 47 | GO:0009435: NAD biosynthetic process | 1.43E-03 |
| 48 | GO:0071368: cellular response to cytokinin stimulus | 1.43E-03 |
| 49 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.76E-03 |
| 50 | GO:0006751: glutathione catabolic process | 1.76E-03 |
| 51 | GO:0006555: methionine metabolic process | 1.76E-03 |
| 52 | GO:0042732: D-xylose metabolic process | 1.76E-03 |
| 53 | GO:0010315: auxin efflux | 1.76E-03 |
| 54 | GO:0045814: negative regulation of gene expression, epigenetic | 2.11E-03 |
| 55 | GO:0017148: negative regulation of translation | 2.11E-03 |
| 56 | GO:0007623: circadian rhythm | 2.37E-03 |
| 57 | GO:0006400: tRNA modification | 2.48E-03 |
| 58 | GO:0052543: callose deposition in cell wall | 2.88E-03 |
| 59 | GO:0005978: glycogen biosynthetic process | 2.88E-03 |
| 60 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.88E-03 |
| 61 | GO:0030162: regulation of proteolysis | 2.88E-03 |
| 62 | GO:0010099: regulation of photomorphogenesis | 3.29E-03 |
| 63 | GO:0022900: electron transport chain | 3.29E-03 |
| 64 | GO:0016051: carbohydrate biosynthetic process | 3.40E-03 |
| 65 | GO:0046916: cellular transition metal ion homeostasis | 3.72E-03 |
| 66 | GO:0009733: response to auxin | 4.11E-03 |
| 67 | GO:0009638: phototropism | 4.17E-03 |
| 68 | GO:0010018: far-red light signaling pathway | 4.17E-03 |
| 69 | GO:0009926: auxin polar transport | 4.37E-03 |
| 70 | GO:0042546: cell wall biogenesis | 4.54E-03 |
| 71 | GO:0048229: gametophyte development | 5.12E-03 |
| 72 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.12E-03 |
| 73 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 5.28E-03 |
| 74 | GO:0016925: protein sumoylation | 5.62E-03 |
| 75 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.62E-03 |
| 76 | GO:0009809: lignin biosynthetic process | 5.88E-03 |
| 77 | GO:0009585: red, far-red light phototransduction | 5.88E-03 |
| 78 | GO:0006006: glucose metabolic process | 6.14E-03 |
| 79 | GO:0018107: peptidyl-threonine phosphorylation | 6.14E-03 |
| 80 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.14E-03 |
| 81 | GO:0010223: secondary shoot formation | 6.67E-03 |
| 82 | GO:0009934: regulation of meristem structural organization | 6.67E-03 |
| 83 | GO:0010143: cutin biosynthetic process | 6.67E-03 |
| 84 | GO:0002237: response to molecule of bacterial origin | 6.67E-03 |
| 85 | GO:0045454: cell redox homeostasis | 6.79E-03 |
| 86 | GO:0009225: nucleotide-sugar metabolic process | 7.22E-03 |
| 87 | GO:0010167: response to nitrate | 7.22E-03 |
| 88 | GO:0042753: positive regulation of circadian rhythm | 7.79E-03 |
| 89 | GO:0006487: protein N-linked glycosylation | 8.38E-03 |
| 90 | GO:0009751: response to salicylic acid | 8.71E-03 |
| 91 | GO:0006629: lipid metabolic process | 8.87E-03 |
| 92 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.97E-03 |
| 93 | GO:0006306: DNA methylation | 9.59E-03 |
| 94 | GO:0009753: response to jasmonic acid | 9.70E-03 |
| 95 | GO:0006730: one-carbon metabolic process | 1.02E-02 |
| 96 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.02E-02 |
| 97 | GO:0040007: growth | 1.09E-02 |
| 98 | GO:0010584: pollen exine formation | 1.15E-02 |
| 99 | GO:0019722: calcium-mediated signaling | 1.15E-02 |
| 100 | GO:0042127: regulation of cell proliferation | 1.15E-02 |
| 101 | GO:0016117: carotenoid biosynthetic process | 1.22E-02 |
| 102 | GO:0015991: ATP hydrolysis coupled proton transport | 1.29E-02 |
| 103 | GO:0010182: sugar mediated signaling pathway | 1.36E-02 |
| 104 | GO:0015986: ATP synthesis coupled proton transport | 1.43E-02 |
| 105 | GO:0030154: cell differentiation | 1.43E-02 |
| 106 | GO:0019252: starch biosynthetic process | 1.50E-02 |
| 107 | GO:0009739: response to gibberellin | 1.62E-02 |
| 108 | GO:1901657: glycosyl compound metabolic process | 1.73E-02 |
| 109 | GO:0010252: auxin homeostasis | 1.81E-02 |
| 110 | GO:0007267: cell-cell signaling | 1.89E-02 |
| 111 | GO:0009911: positive regulation of flower development | 2.05E-02 |
| 112 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 2.13E-02 |
| 113 | GO:0048573: photoperiodism, flowering | 2.30E-02 |
| 114 | GO:0005975: carbohydrate metabolic process | 2.35E-02 |
| 115 | GO:0016311: dephosphorylation | 2.39E-02 |
| 116 | GO:0018298: protein-chromophore linkage | 2.47E-02 |
| 117 | GO:0010311: lateral root formation | 2.56E-02 |
| 118 | GO:0009723: response to ethylene | 2.60E-02 |
| 119 | GO:0006811: ion transport | 2.65E-02 |
| 120 | GO:0010119: regulation of stomatal movement | 2.74E-02 |
| 121 | GO:0009637: response to blue light | 2.93E-02 |
| 122 | GO:0006839: mitochondrial transport | 3.21E-02 |
| 123 | GO:0030001: metal ion transport | 3.21E-02 |
| 124 | GO:0042542: response to hydrogen peroxide | 3.41E-02 |
| 125 | GO:0009640: photomorphogenesis | 3.51E-02 |
| 126 | GO:0008152: metabolic process | 4.52E-02 |
| 127 | GO:0043086: negative regulation of catalytic activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity | 0.00E+00 |
| 2 | GO:0045486: naringenin 3-dioxygenase activity | 0.00E+00 |
| 3 | GO:0044318: L-aspartate:fumarate oxidoreductase activity | 0.00E+00 |
| 4 | GO:0008734: L-aspartate oxidase activity | 0.00E+00 |
| 5 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 6 | GO:0047213: anthocyanidin 3-O-glucosyltransferase activity | 0.00E+00 |
| 7 | GO:0016757: transferase activity, transferring glycosyl groups | 3.42E-07 |
| 8 | GO:0045430: chalcone isomerase activity | 2.01E-05 |
| 9 | GO:0016161: beta-amylase activity | 6.84E-05 |
| 10 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.28E-04 |
| 11 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.28E-04 |
| 12 | GO:0010313: phytochrome binding | 1.60E-04 |
| 13 | GO:0010291: carotene beta-ring hydroxylase activity | 3.65E-04 |
| 14 | GO:0004566: beta-glucuronidase activity | 3.65E-04 |
| 15 | GO:0044390: ubiquitin-like protein conjugating enzyme binding | 3.65E-04 |
| 16 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.65E-04 |
| 17 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 3.65E-04 |
| 18 | GO:0003839: gamma-glutamylcyclotransferase activity | 3.65E-04 |
| 19 | GO:0010280: UDP-L-rhamnose synthase activity | 3.65E-04 |
| 20 | GO:0000064: L-ornithine transmembrane transporter activity | 3.65E-04 |
| 21 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 3.65E-04 |
| 22 | GO:0048531: beta-1,3-galactosyltransferase activity | 3.65E-04 |
| 23 | GO:0004614: phosphoglucomutase activity | 3.65E-04 |
| 24 | GO:0008194: UDP-glycosyltransferase activity | 4.43E-04 |
| 25 | GO:0004478: methionine adenosyltransferase activity | 5.97E-04 |
| 26 | GO:0008253: 5'-nucleotidase activity | 5.97E-04 |
| 27 | GO:0031418: L-ascorbic acid binding | 6.05E-04 |
| 28 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 7.98E-04 |
| 29 | GO:0001872: (1->3)-beta-D-glucan binding | 8.53E-04 |
| 30 | GO:0048027: mRNA 5'-UTR binding | 8.53E-04 |
| 31 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 8.53E-04 |
| 32 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 1.13E-03 |
| 33 | GO:0080032: methyl jasmonate esterase activity | 1.13E-03 |
| 34 | GO:0098599: palmitoyl hydrolase activity | 1.13E-03 |
| 35 | GO:0046527: glucosyltransferase activity | 1.13E-03 |
| 36 | GO:0031386: protein tag | 1.43E-03 |
| 37 | GO:0045431: flavonol synthase activity | 1.43E-03 |
| 38 | GO:0016758: transferase activity, transferring hexosyl groups | 1.52E-03 |
| 39 | GO:0016759: cellulose synthase activity | 1.74E-03 |
| 40 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.76E-03 |
| 41 | GO:0080030: methyl indole-3-acetate esterase activity | 1.76E-03 |
| 42 | GO:0008474: palmitoyl-(protein) hydrolase activity | 1.76E-03 |
| 43 | GO:0008429: phosphatidylethanolamine binding | 1.76E-03 |
| 44 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.76E-03 |
| 45 | GO:0004784: superoxide dismutase activity | 1.76E-03 |
| 46 | GO:0102229: amylopectin maltohydrolase activity | 1.76E-03 |
| 47 | GO:0035252: UDP-xylosyltransferase activity | 1.76E-03 |
| 48 | GO:0008195: phosphatidate phosphatase activity | 2.11E-03 |
| 49 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 2.11E-03 |
| 50 | GO:0030247: polysaccharide binding | 2.43E-03 |
| 51 | GO:0102425: myricetin 3-O-glucosyltransferase activity | 2.48E-03 |
| 52 | GO:0102360: daphnetin 3-O-glucosyltransferase activity | 2.48E-03 |
| 53 | GO:0016621: cinnamoyl-CoA reductase activity | 2.48E-03 |
| 54 | GO:0019899: enzyme binding | 2.48E-03 |
| 55 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 2.88E-03 |
| 56 | GO:0008271: secondary active sulfate transmembrane transporter activity | 3.29E-03 |
| 57 | GO:0046914: transition metal ion binding | 3.29E-03 |
| 58 | GO:0016207: 4-coumarate-CoA ligase activity | 3.72E-03 |
| 59 | GO:0046982: protein heterodimerization activity | 4.02E-03 |
| 60 | GO:0009672: auxin:proton symporter activity | 4.17E-03 |
| 61 | GO:0008327: methyl-CpG binding | 5.12E-03 |
| 62 | GO:0047372: acylglycerol lipase activity | 5.12E-03 |
| 63 | GO:0004860: protein kinase inhibitor activity | 5.12E-03 |
| 64 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 5.12E-03 |
| 65 | GO:0015116: sulfate transmembrane transporter activity | 5.62E-03 |
| 66 | GO:0010329: auxin efflux transmembrane transporter activity | 6.14E-03 |
| 67 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.67E-03 |
| 68 | GO:0003712: transcription cofactor activity | 7.22E-03 |
| 69 | GO:0031409: pigment binding | 7.79E-03 |
| 70 | GO:0003714: transcription corepressor activity | 8.38E-03 |
| 71 | GO:0035251: UDP-glucosyltransferase activity | 9.59E-03 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 9.59E-03 |
| 73 | GO:0003677: DNA binding | 9.88E-03 |
| 74 | GO:0004402: histone acetyltransferase activity | 1.29E-02 |
| 75 | GO:0046910: pectinesterase inhibitor activity | 1.35E-02 |
| 76 | GO:0016853: isomerase activity | 1.43E-02 |
| 77 | GO:0003824: catalytic activity | 1.45E-02 |
| 78 | GO:0016887: ATPase activity | 1.55E-02 |
| 79 | GO:0004518: nuclease activity | 1.65E-02 |
| 80 | GO:0016791: phosphatase activity | 1.81E-02 |
| 81 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.89E-02 |
| 82 | GO:0008237: metallopeptidase activity | 1.89E-02 |
| 83 | GO:0016168: chlorophyll binding | 2.13E-02 |
| 84 | GO:0008375: acetylglucosaminyltransferase activity | 2.22E-02 |
| 85 | GO:0016788: hydrolase activity, acting on ester bonds | 2.29E-02 |
| 86 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.30E-02 |
| 87 | GO:0102483: scopolin beta-glucosidase activity | 2.30E-02 |
| 88 | GO:0004806: triglyceride lipase activity | 2.30E-02 |
| 89 | GO:0016740: transferase activity | 2.36E-02 |
| 90 | GO:0004222: metalloendopeptidase activity | 2.65E-02 |
| 91 | GO:0008422: beta-glucosidase activity | 3.12E-02 |
| 92 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.71E-02 |
| 93 | GO:0015293: symporter activity | 3.81E-02 |
| 94 | GO:0009055: electron carrier activity | 4.40E-02 |
| 95 | GO:0003690: double-stranded DNA binding | 4.44E-02 |
| 96 | GO:0031625: ubiquitin protein ligase binding | 4.66E-02 |
| 97 | GO:0045330: aspartyl esterase activity | 4.66E-02 |
| 98 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain | 3.65E-04 |
| 2 | GO:0000139: Golgi membrane | 4.19E-04 |
| 3 | GO:0031225: anchored component of membrane | 5.16E-04 |
| 4 | GO:0046658: anchored component of plasma membrane | 5.74E-04 |
| 5 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 5.97E-04 |
| 6 | GO:0036513: Derlin-1 retrotranslocation complex | 8.53E-04 |
| 7 | GO:0009505: plant-type cell wall | 1.35E-03 |
| 8 | GO:0043231: intracellular membrane-bounded organelle | 2.09E-03 |
| 9 | GO:0010369: chromocenter | 2.11E-03 |
| 10 | GO:0000786: nucleosome | 3.25E-03 |
| 11 | GO:0042644: chloroplast nucleoid | 3.72E-03 |
| 12 | GO:0005794: Golgi apparatus | 4.04E-03 |
| 13 | GO:0005765: lysosomal membrane | 5.12E-03 |
| 14 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 7.22E-03 |
| 15 | GO:0030076: light-harvesting complex | 7.22E-03 |
| 16 | GO:0009507: chloroplast | 1.21E-02 |
| 17 | GO:0000790: nuclear chromatin | 1.22E-02 |
| 18 | GO:0009522: photosystem I | 1.43E-02 |
| 19 | GO:0009523: photosystem II | 1.50E-02 |
| 20 | GO:0071944: cell periphery | 1.73E-02 |
| 21 | GO:0010319: stromule | 1.89E-02 |
| 22 | GO:0009295: nucleoid | 1.89E-02 |
| 23 | GO:0009579: thylakoid | 2.30E-02 |
| 24 | GO:0009506: plasmodesma | 2.42E-02 |
| 25 | GO:0019005: SCF ubiquitin ligase complex | 2.47E-02 |
| 26 | GO:0005783: endoplasmic reticulum | 3.74E-02 |
| 27 | GO:0005743: mitochondrial inner membrane | 3.82E-02 |