co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0018298: protein-chromophore linkage	8.59E-10
6	GO:0009768: photosynthesis, light harvesting in photosystem I	8.85E-10
7	GO:0010218: response to far red light	7.37E-08
8	GO:0009637: response to blue light	1.09E-07
9	GO:0010114: response to red light	2.19E-07
10	GO:0009645: response to low light intensity stimulus	2.34E-07
11	GO:0007623: circadian rhythm	5.26E-06
12	GO:0009644: response to high light intensity	9.67E-06
13	GO:0009769: photosynthesis, light harvesting in photosystem II	3.42E-05
14	GO:0015979: photosynthesis	3.50E-05
15	GO:0010362: negative regulation of anion channel activity by blue light	8.61E-05
16	GO:0015812: gamma-aminobutyric acid transport	8.61E-05
17	GO:0032958: inositol phosphate biosynthetic process	8.61E-05
18	GO:0000160: phosphorelay signal transduction system	9.09E-05
19	GO:0006355: regulation of transcription, DNA-templated	1.82E-04
20	GO:0008643: carbohydrate transport	1.92E-04
21	GO:0055129: L-proline biosynthetic process	2.04E-04
22	GO:0051170: nuclear import	2.04E-04
23	GO:0010155: regulation of proton transport	2.04E-04
24	GO:0009723: response to ethylene	2.40E-04
25	GO:0048511: rhythmic process	3.20E-04
26	GO:1902448: positive regulation of shade avoidance	3.42E-04
27	GO:0010017: red or far-red light signaling pathway	3.51E-04
28	GO:1901000: regulation of response to salt stress	4.92E-04
29	GO:0044211: CTP salvage	4.92E-04
30	GO:0030100: regulation of endocytosis	4.92E-04
31	GO:0006020: inositol metabolic process	4.92E-04
32	GO:0006351: transcription, DNA-templated	6.19E-04
33	GO:0009765: photosynthesis, light harvesting	6.55E-04
34	GO:2000306: positive regulation of photomorphogenesis	6.55E-04
35	GO:0010600: regulation of auxin biosynthetic process	6.55E-04
36	GO:0044206: UMP salvage	6.55E-04
37	GO:0030104: water homeostasis	6.55E-04
38	GO:0048578: positive regulation of long-day photoperiodism, flowering	8.29E-04
39	GO:0043097: pyrimidine nucleoside salvage	8.29E-04
40	GO:0009904: chloroplast accumulation movement	8.29E-04
41	GO:0006461: protein complex assembly	8.29E-04
42	GO:0016123: xanthophyll biosynthetic process	8.29E-04
43	GO:0045962: positive regulation of development, heterochronic	1.01E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	1.01E-03
45	GO:0009635: response to herbicide	1.01E-03
46	GO:0006561: proline biosynthetic process	1.01E-03
47	GO:0015995: chlorophyll biosynthetic process	1.07E-03
48	GO:0009817: defense response to fungus, incompatible interaction	1.18E-03
49	GO:0009416: response to light stimulus	1.18E-03
50	GO:0071470: cellular response to osmotic stress	1.20E-03
51	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.20E-03
52	GO:0009903: chloroplast avoidance movement	1.20E-03
53	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.20E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.20E-03
55	GO:0009409: response to cold	1.26E-03
56	GO:0010119: regulation of stomatal movement	1.35E-03
57	GO:0010161: red light signaling pathway	1.41E-03
58	GO:0010928: regulation of auxin mediated signaling pathway	1.63E-03
59	GO:0010078: maintenance of root meristem identity	1.63E-03
60	GO:0009704: de-etiolation	1.63E-03
61	GO:0080167: response to karrikin	1.84E-03
62	GO:0009827: plant-type cell wall modification	1.86E-03
63	GO:0010099: regulation of photomorphogenesis	1.86E-03
64	GO:0009640: photomorphogenesis	1.89E-03
65	GO:0090333: regulation of stomatal closure	2.10E-03
66	GO:0009638: phototropism	2.35E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.35E-03
68	GO:0008356: asymmetric cell division	2.35E-03
69	GO:0009585: red, far-red light phototransduction	2.54E-03
70	GO:0055062: phosphate ion homeostasis	2.61E-03
71	GO:0009688: abscisic acid biosynthetic process	2.61E-03
72	GO:0009641: shade avoidance	2.61E-03
73	GO:0046856: phosphatidylinositol dephosphorylation	2.87E-03
74	GO:0009785: blue light signaling pathway	3.43E-03
75	GO:0009718: anthocyanin-containing compound biosynthetic process	3.43E-03
76	GO:0009266: response to temperature stimulus	3.73E-03
77	GO:0019853: L-ascorbic acid biosynthetic process	4.03E-03
78	GO:0090351: seedling development	4.03E-03
79	GO:0009269: response to desiccation	5.32E-03
80	GO:0003333: amino acid transmembrane transport	5.32E-03
81	GO:0071215: cellular response to abscisic acid stimulus	6.01E-03
82	GO:0006012: galactose metabolic process	6.01E-03
83	GO:0045492: xylan biosynthetic process	6.36E-03
84	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.91E-03
85	GO:0010182: sugar mediated signaling pathway	7.48E-03
86	GO:0006814: sodium ion transport	7.87E-03
87	GO:0042752: regulation of circadian rhythm	7.87E-03
88	GO:0055085: transmembrane transport	8.42E-03
89	GO:1901657: glycosyl compound metabolic process	9.48E-03
90	GO:0009737: response to abscisic acid	1.08E-02
91	GO:0048573: photoperiodism, flowering	1.26E-02
92	GO:0044550: secondary metabolite biosynthetic process	1.29E-02
93	GO:0045892: negative regulation of transcription, DNA-templated	1.45E-02
94	GO:0009631: cold acclimation	1.50E-02
95	GO:0032259: methylation	1.68E-02
96	GO:0042542: response to hydrogen peroxide	1.86E-02
97	GO:0051707: response to other organism	1.92E-02
98	GO:0009965: leaf morphogenesis	2.08E-02
99	GO:0009651: response to salt stress	2.13E-02
100	GO:0042538: hyperosmotic salinity response	2.25E-02
101	GO:0055114: oxidation-reduction process	2.25E-02
102	GO:0006812: cation transport	2.25E-02
103	GO:0006857: oligopeptide transport	2.49E-02
104	GO:0009909: regulation of flower development	2.55E-02
105	GO:0009624: response to nematode	3.04E-02
106	GO:0009058: biosynthetic process	3.71E-02
107	GO:0010228: vegetative to reproductive phase transition of meristem	4.64E-02
108	GO:0016310: phosphorylation	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
10	GO:0031409: pigment binding	4.81E-10
11	GO:0016168: chlorophyll binding	3.11E-08
12	GO:0080079: cellobiose glucosidase activity	8.61E-05
13	GO:0004349: glutamate 5-kinase activity	8.61E-05
14	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	8.61E-05
15	GO:0000828: inositol hexakisphosphate kinase activity	8.61E-05
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	8.61E-05
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	8.61E-05
18	GO:0000829: inositol heptakisphosphate kinase activity	8.61E-05
19	GO:0016630: protochlorophyllide reductase activity	2.04E-04
20	GO:0015180: L-alanine transmembrane transporter activity	2.04E-04
21	GO:0015181: arginine transmembrane transporter activity	4.92E-04
22	GO:0009882: blue light photoreceptor activity	4.92E-04
23	GO:0015189: L-lysine transmembrane transporter activity	4.92E-04
24	GO:0005313: L-glutamate transmembrane transporter activity	6.55E-04
25	GO:0004845: uracil phosphoribosyltransferase activity	6.55E-04
26	GO:0000156: phosphorelay response regulator activity	7.28E-04
27	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	8.29E-04
28	GO:0015562: efflux transmembrane transporter activity	1.01E-03
29	GO:0004849: uridine kinase activity	1.20E-03
30	GO:0004033: aldo-keto reductase (NADP) activity	1.63E-03
31	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	1.86E-03
32	GO:0071949: FAD binding	2.10E-03
33	GO:0000989: transcription factor activity, transcription factor binding	2.10E-03
34	GO:0003677: DNA binding	2.30E-03
35	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.61E-03
36	GO:0047372: acylglycerol lipase activity	2.87E-03
37	GO:0005515: protein binding	3.01E-03
38	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.15E-03
39	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.32E-03
40	GO:0004565: beta-galactosidase activity	3.43E-03
41	GO:0004022: alcohol dehydrogenase (NAD) activity	3.43E-03
42	GO:0005315: inorganic phosphate transmembrane transporter activity	3.43E-03
43	GO:0000155: phosphorelay sensor kinase activity	3.43E-03
44	GO:0003712: transcription cofactor activity	4.03E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.61E-03
46	GO:0008324: cation transmembrane transporter activity	4.98E-03
47	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.32E-03
48	GO:0008270: zinc ion binding	5.80E-03
49	GO:0015297: antiporter activity	5.90E-03
50	GO:0005351: sugar:proton symporter activity	6.04E-03
51	GO:0046872: metal ion binding	6.06E-03
52	GO:0008514: organic anion transmembrane transporter activity	6.36E-03
53	GO:0010181: FMN binding	7.87E-03
54	GO:0008168: methyltransferase activity	9.21E-03
55	GO:0004497: monooxygenase activity	1.19E-02
56	GO:0061630: ubiquitin protein ligase activity	1.25E-02
57	GO:0102483: scopolin beta-glucosidase activity	1.26E-02
58	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.45E-02
59	GO:0008422: beta-glucosidase activity	1.70E-02
60	GO:0005215: transporter activity	1.73E-02
61	GO:0005198: structural molecule activity	2.08E-02
62	GO:0015293: symporter activity	2.08E-02
63	GO:0004672: protein kinase activity	2.47E-02
64	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
65	GO:0031625: ubiquitin protein ligase binding	2.55E-02
66	GO:0022857: transmembrane transporter activity	2.92E-02
67	GO:0016874: ligase activity	2.92E-02
68	GO:0004674: protein serine/threonine kinase activity	3.74E-02
69	GO:0015144: carbohydrate transmembrane transporter activity	4.06E-02
70	GO:0019825: oxygen binding	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	6.21E-09
2	GO:0030076: light-harvesting complex	4.80E-08
3	GO:0010287: plastoglobule	6.21E-08
4	GO:0009523: photosystem II	5.75E-07
5	GO:0009534: chloroplast thylakoid	3.55E-06
6	GO:0016021: integral component of membrane	1.82E-05
7	GO:0009535: chloroplast thylakoid membrane	2.91E-05
8	GO:0009579: thylakoid	3.85E-05
9	GO:0009941: chloroplast envelope	2.61E-04
10	GO:0009898: cytoplasmic side of plasma membrane	6.55E-04
11	GO:0009517: PSII associated light-harvesting complex II	6.55E-04
12	GO:0005798: Golgi-associated vesicle	1.01E-03
13	GO:0009986: cell surface	1.41E-03
14	GO:0016020: membrane	3.09E-03
15	GO:0005769: early endosome	4.34E-03
16	GO:0042651: thylakoid membrane	4.98E-03
17	GO:0009707: chloroplast outer membrane	1.35E-02
18	GO:0000151: ubiquitin ligase complex	1.35E-02
19	GO:0009507: chloroplast	2.23E-02
20	GO:0000139: Golgi membrane	2.23E-02
21	GO:0031966: mitochondrial membrane	2.25E-02
22	GO:0005681: spliceosomal complex	2.67E-02
23	GO:0016607: nuclear speck	2.73E-02
24	GO:0005834: heterotrimeric G-protein complex	2.79E-02
25	GO:0005654: nucleoplasm	3.50E-02
26	GO:0005623: cell	3.64E-02
27	GO:0005802: trans-Golgi network	4.97E-02