co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0042407: cristae formation	0.00E+00
6	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	5.09E-10
8	GO:0009658: chloroplast organization	6.65E-07
9	GO:0006418: tRNA aminoacylation for protein translation	7.42E-06
10	GO:0015979: photosynthesis	3.08E-05
11	GO:0032544: plastid translation	5.37E-05
12	GO:0071482: cellular response to light stimulus	5.37E-05
13	GO:0048481: plant ovule development	7.78E-05
14	GO:1904966: positive regulation of vitamin E biosynthetic process	8.25E-05
15	GO:1904964: positive regulation of phytol biosynthetic process	8.25E-05
16	GO:0042371: vitamin K biosynthetic process	8.25E-05
17	GO:0006430: lysyl-tRNA aminoacylation	8.25E-05
18	GO:0006352: DNA-templated transcription, initiation	1.14E-04
19	GO:0010020: chloroplast fission	1.75E-04
20	GO:0006568: tryptophan metabolic process	1.97E-04
21	GO:0010270: photosystem II oxygen evolving complex assembly	1.97E-04
22	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.97E-04
23	GO:0006423: cysteinyl-tRNA aminoacylation	1.97E-04
24	GO:0006457: protein folding	3.02E-04
25	GO:0006433: prolyl-tRNA aminoacylation	3.29E-04
26	GO:0010581: regulation of starch biosynthetic process	3.29E-04
27	GO:0006424: glutamyl-tRNA aminoacylation	4.75E-04
28	GO:0043572: plastid fission	4.75E-04
29	GO:0006986: response to unfolded protein	4.75E-04
30	GO:2001141: regulation of RNA biosynthetic process	4.75E-04
31	GO:0051085: chaperone mediated protein folding requiring cofactor	4.75E-04
32	GO:0006241: CTP biosynthetic process	4.75E-04
33	GO:0006165: nucleoside diphosphate phosphorylation	4.75E-04
34	GO:0006228: UTP biosynthetic process	4.75E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	4.75E-04
36	GO:0033014: tetrapyrrole biosynthetic process	4.75E-04
37	GO:0071483: cellular response to blue light	6.32E-04
38	GO:0006808: regulation of nitrogen utilization	6.32E-04
39	GO:0010109: regulation of photosynthesis	6.32E-04
40	GO:0006183: GTP biosynthetic process	6.32E-04
41	GO:0006633: fatty acid biosynthetic process	6.81E-04
42	GO:0009793: embryo development ending in seed dormancy	7.40E-04
43	GO:0032543: mitochondrial translation	8.00E-04
44	GO:0010027: thylakoid membrane organization	8.68E-04
45	GO:0009735: response to cytokinin	9.50E-04
46	GO:0006828: manganese ion transport	9.77E-04
47	GO:0006412: translation	1.07E-03
48	GO:0009854: oxidative photosynthetic carbon pathway	1.16E-03
49	GO:0006508: proteolysis	1.29E-03
50	GO:0042255: ribosome assembly	1.57E-03
51	GO:0006353: DNA-templated transcription, termination	1.57E-03
52	GO:0009657: plastid organization	1.79E-03
53	GO:0019430: removal of superoxide radicals	1.79E-03
54	GO:0006783: heme biosynthetic process	2.02E-03
55	GO:0043067: regulation of programmed cell death	2.26E-03
56	GO:0006779: porphyrin-containing compound biosynthetic process	2.26E-03
57	GO:0010380: regulation of chlorophyll biosynthetic process	2.26E-03
58	GO:0051603: proteolysis involved in cellular protein catabolic process	2.48E-03
59	GO:0045036: protein targeting to chloroplast	2.51E-03
60	GO:0006782: protoporphyrinogen IX biosynthetic process	2.51E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	2.77E-03
62	GO:0043085: positive regulation of catalytic activity	2.77E-03
63	GO:0006816: calcium ion transport	2.77E-03
64	GO:0006415: translational termination	2.77E-03
65	GO:0009767: photosynthetic electron transport chain	3.31E-03
66	GO:0090351: seedling development	3.88E-03
67	GO:0009411: response to UV	5.78E-03
68	GO:0016117: carotenoid biosynthetic process	6.48E-03
69	GO:0008033: tRNA processing	6.83E-03
70	GO:0010197: polar nucleus fusion	7.20E-03
71	GO:0007018: microtubule-based movement	7.57E-03
72	GO:0006814: sodium ion transport	7.57E-03
73	GO:0055085: transmembrane transport	7.85E-03
74	GO:0009791: post-embryonic development	7.95E-03
75	GO:0032502: developmental process	8.73E-03
76	GO:0018298: protein-chromophore linkage	1.30E-02
77	GO:0009817: defense response to fungus, incompatible interaction	1.30E-02
78	GO:0045454: cell redox homeostasis	1.35E-02
79	GO:0009637: response to blue light	1.54E-02
80	GO:0009853: photorespiration	1.54E-02
81	GO:0006839: mitochondrial transport	1.69E-02
82	GO:0006631: fatty acid metabolic process	1.74E-02
83	GO:0042542: response to hydrogen peroxide	1.79E-02
84	GO:0010114: response to red light	1.84E-02
85	GO:0006364: rRNA processing	2.28E-02
86	GO:0009585: red, far-red light phototransduction	2.28E-02
87	GO:0006810: transport	2.31E-02
88	GO:0048316: seed development	2.62E-02
89	GO:0009553: embryo sac development	2.86E-02
90	GO:0009624: response to nematode	2.93E-02
91	GO:0042744: hydrogen peroxide catabolic process	3.76E-02
92	GO:0009790: embryo development	3.83E-02
93	GO:0006413: translational initiation	4.11E-02
94	GO:0040008: regulation of growth	4.18E-02
95	GO:0006414: translational elongation	4.39E-02
96	GO:0055114: oxidation-reduction process	4.56E-02
97	GO:0008380: RNA splicing	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	6.19E-08
10	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.72E-07
11	GO:0001053: plastid sigma factor activity	6.47E-06
12	GO:0016987: sigma factor activity	6.47E-06
13	GO:0043495: protein anchor	6.47E-06
14	GO:0004812: aminoacyl-tRNA ligase activity	1.58E-05
15	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	8.25E-05
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	8.25E-05
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.25E-05
18	GO:0004824: lysine-tRNA ligase activity	8.25E-05
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	8.25E-05
20	GO:0003735: structural constituent of ribosome	1.11E-04
21	GO:0004817: cysteine-tRNA ligase activity	1.97E-04
22	GO:0000774: adenyl-nucleotide exchange factor activity	1.97E-04
23	GO:0016630: protochlorophyllide reductase activity	1.97E-04
24	GO:0051087: chaperone binding	2.75E-04
25	GO:0004176: ATP-dependent peptidase activity	3.03E-04
26	GO:0004751: ribose-5-phosphate isomerase activity	3.29E-04
27	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.29E-04
28	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.29E-04
29	GO:0004827: proline-tRNA ligase activity	3.29E-04
30	GO:0017150: tRNA dihydrouridine synthase activity	3.29E-04
31	GO:0002161: aminoacyl-tRNA editing activity	3.29E-04
32	GO:0051082: unfolded protein binding	3.84E-04
33	GO:0016149: translation release factor activity, codon specific	4.75E-04
34	GO:0004550: nucleoside diphosphate kinase activity	4.75E-04
35	GO:0008508: bile acid:sodium symporter activity	4.75E-04
36	GO:0016851: magnesium chelatase activity	4.75E-04
37	GO:0016836: hydro-lyase activity	6.32E-04
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	6.32E-04
39	GO:0008237: metallopeptidase activity	7.76E-04
40	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.00E-04
41	GO:0003959: NADPH dehydrogenase activity	8.00E-04
42	GO:0016887: ATPase activity	8.88E-04
43	GO:0051920: peroxiredoxin activity	1.16E-03
44	GO:0102391: decanoate--CoA ligase activity	1.16E-03
45	GO:0019899: enzyme binding	1.36E-03
46	GO:0004467: long-chain fatty acid-CoA ligase activity	1.36E-03
47	GO:0003746: translation elongation factor activity	1.40E-03
48	GO:0016209: antioxidant activity	1.57E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	1.57E-03
50	GO:0004185: serine-type carboxypeptidase activity	1.79E-03
51	GO:0003747: translation release factor activity	2.02E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.09E-03
53	GO:0047617: acyl-CoA hydrolase activity	2.26E-03
54	GO:0005384: manganese ion transmembrane transporter activity	2.26E-03
55	GO:0042803: protein homodimerization activity	2.28E-03
56	GO:0005525: GTP binding	2.30E-03
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.40E-03
58	GO:0008047: enzyme activator activity	2.51E-03
59	GO:0000049: tRNA binding	3.03E-03
60	GO:0015095: magnesium ion transmembrane transporter activity	3.31E-03
61	GO:0031072: heat shock protein binding	3.31E-03
62	GO:0008266: poly(U) RNA binding	3.59E-03
63	GO:0022891: substrate-specific transmembrane transporter activity	5.78E-03
64	GO:0003727: single-stranded RNA binding	6.13E-03
65	GO:0008080: N-acetyltransferase activity	7.20E-03
66	GO:0042802: identical protein binding	7.43E-03
67	GO:0050662: coenzyme binding	7.57E-03
68	GO:0004791: thioredoxin-disulfide reductase activity	7.57E-03
69	GO:0010181: FMN binding	7.57E-03
70	GO:0000287: magnesium ion binding	8.88E-03
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.12E-03
72	GO:0008483: transaminase activity	9.94E-03
73	GO:0005524: ATP binding	1.01E-02
74	GO:0016168: chlorophyll binding	1.12E-02
75	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.30E-02
76	GO:0004222: metalloendopeptidase activity	1.39E-02
77	GO:0003924: GTPase activity	1.66E-02
78	GO:0016491: oxidoreductase activity	2.01E-02
79	GO:0003690: double-stranded DNA binding	2.33E-02
80	GO:0003729: mRNA binding	2.34E-02
81	GO:0003723: RNA binding	2.40E-02
82	GO:0003777: microtubule motor activity	2.45E-02
83	GO:0030170: pyridoxal phosphate binding	3.70E-02
84	GO:0008017: microtubule binding	4.46E-02
85	GO:0003743: translation initiation factor activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.88E-43
2	GO:0009941: chloroplast envelope	6.25E-28
3	GO:0009570: chloroplast stroma	4.89E-26
4	GO:0009534: chloroplast thylakoid	1.91E-07
5	GO:0009547: plastid ribosome	8.25E-05
6	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	8.25E-05
7	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	8.25E-05
8	GO:0005840: ribosome	1.37E-04
9	GO:0009536: plastid	1.97E-04
10	GO:0031969: chloroplast membrane	2.46E-04
11	GO:0042651: thylakoid membrane	2.75E-04
12	GO:0010007: magnesium chelatase complex	3.29E-04
13	GO:0009706: chloroplast inner membrane	3.84E-04
14	GO:0005759: mitochondrial matrix	6.81E-04
15	GO:0009535: chloroplast thylakoid membrane	6.93E-04
16	GO:0009579: thylakoid	1.42E-03
17	GO:0000311: plastid large ribosomal subunit	3.03E-03
18	GO:0000312: plastid small ribosomal subunit	3.59E-03
19	GO:0043234: protein complex	4.18E-03
20	GO:0009543: chloroplast thylakoid lumen	4.25E-03
21	GO:0005871: kinesin complex	6.48E-03
22	GO:0009523: photosystem II	7.95E-03
23	GO:0005739: mitochondrion	8.04E-03
24	GO:0010319: stromule	9.94E-03
25	GO:0022625: cytosolic large ribosomal subunit	1.18E-02
26	GO:0009707: chloroplast outer membrane	1.30E-02
27	GO:0016020: membrane	1.41E-02
28	GO:0015934: large ribosomal subunit	1.44E-02
29	GO:0005743: mitochondrial inner membrane	1.55E-02
30	GO:0005618: cell wall	2.51E-02
31	GO:0022626: cytosolic ribosome	2.83E-02
32	GO:0005623: cell	3.50E-02