co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006642: triglyceride mobilization	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0071482: cellular response to light stimulus	1.03E-05
4	GO:0006352: DNA-templated transcription, initiation	2.37E-05
5	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.88E-05
6	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.88E-05
7	GO:0010020: chloroplast fission	3.80E-05
8	GO:0006568: tryptophan metabolic process	7.28E-05
9	GO:0010581: regulation of starch biosynthetic process	1.27E-04
10	GO:0019563: glycerol catabolic process	1.27E-04
11	GO:0042780: tRNA 3'-end processing	1.27E-04
12	GO:0030865: cortical cytoskeleton organization	1.27E-04
13	GO:0032504: multicellular organism reproduction	1.27E-04
14	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.27E-04
15	GO:0000913: preprophase band assembly	1.27E-04
16	GO:2001141: regulation of RNA biosynthetic process	1.89E-04
17	GO:0009152: purine ribonucleotide biosynthetic process	1.89E-04
18	GO:0046653: tetrahydrofolate metabolic process	1.89E-04
19	GO:0009658: chloroplast organization	2.31E-04
20	GO:0071483: cellular response to blue light	2.57E-04
21	GO:0015979: photosynthesis	3.65E-04
22	GO:0010190: cytochrome b6f complex assembly	4.06E-04
23	GO:0000470: maturation of LSU-rRNA	4.06E-04
24	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.86E-04
25	GO:0006400: tRNA modification	5.68E-04
26	GO:0009657: plastid organization	7.44E-04
27	GO:0019430: removal of superoxide radicals	7.44E-04
28	GO:0009051: pentose-phosphate shunt, oxidative branch	8.35E-04
29	GO:0010380: regulation of chlorophyll biosynthetic process	9.29E-04
30	GO:0009073: aromatic amino acid family biosynthetic process	1.13E-03
31	GO:0043085: positive regulation of catalytic activity	1.13E-03
32	GO:0006006: glucose metabolic process	1.34E-03
33	GO:0006094: gluconeogenesis	1.34E-03
34	GO:0019253: reductive pentose-phosphate cycle	1.45E-03
35	GO:0090351: seedling development	1.56E-03
36	GO:0000226: microtubule cytoskeleton organization	2.70E-03
37	GO:0080022: primary root development	2.70E-03
38	GO:0010027: thylakoid membrane organization	4.21E-03
39	GO:0015995: chlorophyll biosynthetic process	4.71E-03
40	GO:0009637: response to blue light	5.94E-03
41	GO:0009853: photorespiration	5.94E-03
42	GO:0030001: metal ion transport	6.50E-03
43	GO:0010114: response to red light	7.08E-03
44	GO:0055114: oxidation-reduction process	7.42E-03
45	GO:0051603: proteolysis involved in cellular protein catabolic process	8.92E-03
46	GO:0006096: glycolytic process	9.79E-03
47	GO:0009058: biosynthetic process	1.36E-02
48	GO:0042744: hydrogen peroxide catabolic process	1.43E-02
49	GO:0006413: translational initiation	1.56E-02
50	GO:0009451: RNA modification	1.67E-02
51	GO:0008380: RNA splicing	1.86E-02
52	GO:0006412: translation	2.01E-02
53	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.12E-02
54	GO:0045454: cell redox homeostasis	2.97E-02
55	GO:0032259: methylation	3.34E-02
56	GO:0006629: lipid metabolic process	3.45E-02
57	GO:0006397: mRNA processing	3.55E-02
58	GO:0008152: metabolic process	3.70E-02
59	GO:0006508: proteolysis	4.67E-02
60	GO:0009735: response to cytokinin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0016987: sigma factor activity	1.08E-06
2	GO:0001053: plastid sigma factor activity	1.08E-06
3	GO:0004807: triose-phosphate isomerase activity	2.88E-05
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.88E-05
5	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.88E-05
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.88E-05
7	GO:0016630: protochlorophyllide reductase activity	7.28E-05
8	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.27E-04
9	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.27E-04
10	GO:0008864: formyltetrahydrofolate deformylase activity	1.27E-04
11	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.27E-04
12	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.27E-04
13	GO:0004045: aminoacyl-tRNA hydrolase activity	2.57E-04
14	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.57E-04
15	GO:0003959: NADPH dehydrogenase activity	3.30E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.66E-04
17	GO:0102360: daphnetin 3-O-glucosyltransferase activity	5.68E-04
18	GO:0102425: myricetin 3-O-glucosyltransferase activity	5.68E-04
19	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.49E-04
20	GO:0047893: flavonol 3-O-glucosyltransferase activity	6.55E-04
21	GO:0047617: acyl-CoA hydrolase activity	9.29E-04
22	GO:0008047: enzyme activator activity	1.03E-03
23	GO:0019843: rRNA binding	1.12E-03
24	GO:0005528: FK506 binding	1.79E-03
25	GO:0050662: coenzyme binding	2.99E-03
26	GO:0004791: thioredoxin-disulfide reductase activity	2.99E-03
27	GO:0016491: oxidoreductase activity	3.52E-03
28	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.58E-03
29	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.88E-03
30	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.58E-03
31	GO:0000987: core promoter proximal region sequence-specific DNA binding	6.13E-03
32	GO:0051539: 4 iron, 4 sulfur cluster binding	6.50E-03
33	GO:0050661: NADP binding	6.50E-03
34	GO:0004185: serine-type carboxypeptidase activity	7.08E-03
35	GO:0003723: RNA binding	8.70E-03
36	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.05E-02
37	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.05E-02
38	GO:0005509: calcium ion binding	1.41E-02
39	GO:0003824: catalytic activity	1.67E-02
40	GO:0008194: UDP-glycosyltransferase activity	1.78E-02
41	GO:0003743: translation initiation factor activity	1.83E-02
42	GO:0008168: methyltransferase activity	2.18E-02
43	GO:0016788: hydrolase activity, acting on ester bonds	2.27E-02
44	GO:0050660: flavin adenine dinucleotide binding	2.48E-02
45	GO:0003735: structural constituent of ribosome	3.04E-02
46	GO:0042803: protein homodimerization activity	3.07E-02
47	GO:0009055: electron carrier activity	3.62E-02
48	GO:0004519: endonuclease activity	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.55E-19
2	GO:0009570: chloroplast stroma	2.83E-09
3	GO:0009543: chloroplast thylakoid lumen	4.88E-08
4	GO:0031977: thylakoid lumen	2.98E-07
5	GO:0009535: chloroplast thylakoid membrane	2.14E-06
6	GO:0009579: thylakoid	1.25E-05
7	GO:0009941: chloroplast envelope	2.27E-05
8	GO:0009654: photosystem II oxygen evolving complex	6.29E-05
9	GO:0030981: cortical microtubule cytoskeleton	7.28E-05
10	GO:0019898: extrinsic component of membrane	1.44E-04
11	GO:0009534: chloroplast thylakoid	1.67E-04
12	GO:0009706: chloroplast inner membrane	9.08E-04
13	GO:0000312: plastid small ribosomal subunit	1.45E-03
14	GO:0030529: intracellular ribonucleoprotein complex	4.21E-03
15	GO:0043231: intracellular membrane-bounded organelle	4.68E-03
16	GO:0005840: ribosome	1.60E-02
17	GO:0009536: plastid	1.87E-02
18	GO:0022627: cytosolic small ribosomal subunit	2.00E-02
19	GO:0031969: chloroplast membrane	2.61E-02
20	GO:0022625: cytosolic large ribosomal subunit	2.71E-02