co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	5.28E-06
5	GO:0006810: transport	7.63E-06
6	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.85E-06
7	GO:2000122: negative regulation of stomatal complex development	1.47E-05
8	GO:0010037: response to carbon dioxide	1.47E-05
9	GO:0015976: carbon utilization	1.47E-05
10	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.33E-04
11	GO:0010362: negative regulation of anion channel activity by blue light	1.33E-04
12	GO:0071370: cellular response to gibberellin stimulus	1.33E-04
13	GO:0015801: aromatic amino acid transport	1.33E-04
14	GO:1902458: positive regulation of stomatal opening	1.33E-04
15	GO:0010411: xyloglucan metabolic process	1.71E-04
16	GO:0000160: phosphorelay signal transduction system	2.12E-04
17	GO:0007623: circadian rhythm	2.46E-04
18	GO:2000123: positive regulation of stomatal complex development	3.07E-04
19	GO:0015786: UDP-glucose transport	3.07E-04
20	GO:0097054: L-glutamate biosynthetic process	3.07E-04
21	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.07E-04
22	GO:0042546: cell wall biogenesis	4.02E-04
23	GO:0015783: GDP-fucose transport	5.06E-04
24	GO:0061077: chaperone-mediated protein folding	5.72E-04
25	GO:0007231: osmosensory signaling pathway	7.24E-04
26	GO:0072334: UDP-galactose transmembrane transport	7.24E-04
27	GO:0006537: glutamate biosynthetic process	7.24E-04
28	GO:0006168: adenine salvage	7.24E-04
29	GO:0006166: purine ribonucleoside salvage	7.24E-04
30	GO:0045727: positive regulation of translation	9.59E-04
31	GO:0033500: carbohydrate homeostasis	9.59E-04
32	GO:2000038: regulation of stomatal complex development	9.59E-04
33	GO:0009902: chloroplast relocation	9.59E-04
34	GO:0019676: ammonia assimilation cycle	9.59E-04
35	GO:0044209: AMP salvage	1.21E-03
36	GO:0010375: stomatal complex patterning	1.21E-03
37	GO:0006656: phosphatidylcholine biosynthetic process	1.21E-03
38	GO:0046785: microtubule polymerization	1.21E-03
39	GO:0045038: protein import into chloroplast thylakoid membrane	1.21E-03
40	GO:0007267: cell-cell signaling	1.44E-03
41	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.49E-03
42	GO:0000741: karyogamy	1.49E-03
43	GO:0010405: arabinogalactan protein metabolic process	1.49E-03
44	GO:0045926: negative regulation of growth	1.78E-03
45	GO:0009817: defense response to fungus, incompatible interaction	2.09E-03
46	GO:0018298: protein-chromophore linkage	2.09E-03
47	GO:0071555: cell wall organization	2.14E-03
48	GO:0010119: regulation of stomatal movement	2.41E-03
49	GO:0007155: cell adhesion	2.42E-03
50	GO:2000070: regulation of response to water deprivation	2.42E-03
51	GO:0009637: response to blue light	2.64E-03
52	GO:0015996: chlorophyll catabolic process	2.77E-03
53	GO:0007186: G-protein coupled receptor signaling pathway	2.77E-03
54	GO:0009657: plastid organization	2.77E-03
55	GO:0032544: plastid translation	2.77E-03
56	GO:0017004: cytochrome complex assembly	2.77E-03
57	GO:0010206: photosystem II repair	3.13E-03
58	GO:0009744: response to sucrose	3.40E-03
59	GO:0009638: phototropism	3.50E-03
60	GO:0016573: histone acetylation	3.50E-03
61	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.89E-03
62	GO:0043069: negative regulation of programmed cell death	3.89E-03
63	GO:0046777: protein autophosphorylation	4.26E-03
64	GO:0006816: calcium ion transport	4.30E-03
65	GO:0006415: translational termination	4.30E-03
66	GO:0019684: photosynthesis, light reaction	4.30E-03
67	GO:0009089: lysine biosynthetic process via diaminopimelate	4.30E-03
68	GO:1903507: negative regulation of nucleic acid-templated transcription	4.30E-03
69	GO:0000272: polysaccharide catabolic process	4.30E-03
70	GO:0018119: peptidyl-cysteine S-nitrosylation	4.30E-03
71	GO:0009736: cytokinin-activated signaling pathway	4.56E-03
72	GO:0015979: photosynthesis	4.62E-03
73	GO:0006820: anion transport	4.72E-03
74	GO:0045037: protein import into chloroplast stroma	4.72E-03
75	GO:0009725: response to hormone	5.15E-03
76	GO:0048768: root hair cell tip growth	5.60E-03
77	GO:0010207: photosystem II assembly	5.60E-03
78	GO:0005985: sucrose metabolic process	6.06E-03
79	GO:0070588: calcium ion transmembrane transport	6.06E-03
80	GO:0006636: unsaturated fatty acid biosynthetic process	6.53E-03
81	GO:0009833: plant-type primary cell wall biogenesis	6.53E-03
82	GO:0006833: water transport	6.53E-03
83	GO:0009742: brassinosteroid mediated signaling pathway	6.87E-03
84	GO:0006338: chromatin remodeling	7.01E-03
85	GO:0005992: trehalose biosynthetic process	7.01E-03
86	GO:0006487: protein N-linked glycosylation	7.01E-03
87	GO:0009768: photosynthesis, light harvesting in photosystem I	7.51E-03
88	GO:0003333: amino acid transmembrane transport	8.02E-03
89	GO:0016998: cell wall macromolecule catabolic process	8.02E-03
90	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.55E-03
91	GO:0019748: secondary metabolic process	8.55E-03
92	GO:0009294: DNA mediated transformation	9.08E-03
93	GO:0019722: calcium-mediated signaling	9.63E-03
94	GO:0006633: fatty acid biosynthetic process	1.02E-02
95	GO:0042631: cellular response to water deprivation	1.08E-02
96	GO:0080022: primary root development	1.08E-02
97	GO:0034220: ion transmembrane transport	1.08E-02
98	GO:0010118: stomatal movement	1.08E-02
99	GO:0010197: polar nucleus fusion	1.13E-02
100	GO:0010182: sugar mediated signaling pathway	1.13E-02
101	GO:0009741: response to brassinosteroid	1.13E-02
102	GO:0071554: cell wall organization or biogenesis	1.32E-02
103	GO:0002229: defense response to oomycetes	1.32E-02
104	GO:0009617: response to bacterium	1.34E-02
105	GO:0009611: response to wounding	1.37E-02
106	GO:0010583: response to cyclopentenone	1.38E-02
107	GO:0010090: trichome morphogenesis	1.44E-02
108	GO:1901657: glycosyl compound metabolic process	1.44E-02
109	GO:0005975: carbohydrate metabolic process	1.60E-02
110	GO:0016126: sterol biosynthetic process	1.71E-02
111	GO:0010027: thylakoid membrane organization	1.71E-02
112	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.78E-02
113	GO:0042128: nitrate assimilation	1.85E-02
114	GO:0010218: response to far red light	2.21E-02
115	GO:0006865: amino acid transport	2.36E-02
116	GO:0009853: photorespiration	2.44E-02
117	GO:0009867: jasmonic acid mediated signaling pathway	2.44E-02
118	GO:0006631: fatty acid metabolic process	2.76E-02
119	GO:0010114: response to red light	2.92E-02
120	GO:0008643: carbohydrate transport	3.09E-02
121	GO:0006855: drug transmembrane transport	3.26E-02
122	GO:0031347: regulation of defense response	3.35E-02
123	GO:0006364: rRNA processing	3.62E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	3.71E-02
125	GO:0006857: oligopeptide transport	3.80E-02
126	GO:0042545: cell wall modification	4.55E-02
127	GO:0009624: response to nematode	4.65E-02
128	GO:0009409: response to cold	4.68E-02
129	GO:0018105: peptidyl-serine phosphorylation	4.74E-02
130	GO:0006396: RNA processing	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.47E-05
3	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.86E-05
4	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.33E-04
5	GO:0080132: fatty acid alpha-hydroxylase activity	1.33E-04
6	GO:0016041: glutamate synthase (ferredoxin) activity	1.33E-04
7	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.71E-04
8	GO:0004089: carbonate dehydratase activity	3.02E-04
9	GO:0015173: aromatic amino acid transmembrane transporter activity	3.07E-04
10	GO:0008967: phosphoglycolate phosphatase activity	3.07E-04
11	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.07E-04
12	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.07E-04
13	GO:0042389: omega-3 fatty acid desaturase activity	3.07E-04
14	GO:0010297: heteropolysaccharide binding	3.07E-04
15	GO:0005528: FK506 binding	4.74E-04
16	GO:0005457: GDP-fucose transmembrane transporter activity	5.06E-04
17	GO:0003999: adenine phosphoribosyltransferase activity	7.24E-04
18	GO:0016149: translation release factor activity, codon specific	7.24E-04
19	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	7.24E-04
20	GO:0005460: UDP-glucose transmembrane transporter activity	7.24E-04
21	GO:0009882: blue light photoreceptor activity	7.24E-04
22	GO:0004506: squalene monooxygenase activity	9.59E-04
23	GO:0004659: prenyltransferase activity	9.59E-04
24	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.01E-03
25	GO:0048038: quinone binding	1.13E-03
26	GO:0008381: mechanically-gated ion channel activity	1.21E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.21E-03
28	GO:0005275: amine transmembrane transporter activity	1.21E-03
29	GO:0051538: 3 iron, 4 sulfur cluster binding	1.21E-03
30	GO:0000156: phosphorelay response regulator activity	1.28E-03
31	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.49E-03
32	GO:0051753: mannan synthase activity	1.78E-03
33	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.78E-03
34	GO:0042802: identical protein binding	2.32E-03
35	GO:0004564: beta-fructofuranosidase activity	2.42E-03
36	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.77E-03
37	GO:0003747: translation release factor activity	3.13E-03
38	GO:0004185: serine-type carboxypeptidase activity	3.40E-03
39	GO:0004575: sucrose alpha-glucosidase activity	3.50E-03
40	GO:0004805: trehalose-phosphatase activity	3.89E-03
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.95E-03
42	GO:0000155: phosphorelay sensor kinase activity	5.15E-03
43	GO:0005262: calcium channel activity	5.15E-03
44	GO:0004650: polygalacturonase activity	5.92E-03
45	GO:0030599: pectinesterase activity	6.11E-03
46	GO:0022857: transmembrane transporter activity	6.11E-03
47	GO:0031409: pigment binding	6.53E-03
48	GO:0003714: transcription corepressor activity	7.01E-03
49	GO:0043424: protein histidine kinase binding	7.51E-03
50	GO:0008514: organic anion transmembrane transporter activity	9.63E-03
51	GO:0015297: antiporter activity	1.07E-02
52	GO:0010181: FMN binding	1.19E-02
53	GO:0050662: coenzyme binding	1.19E-02
54	GO:0019901: protein kinase binding	1.25E-02
55	GO:0004872: receptor activity	1.25E-02
56	GO:0016759: cellulose synthase activity	1.51E-02
57	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.57E-02
58	GO:0016413: O-acetyltransferase activity	1.64E-02
59	GO:0015250: water channel activity	1.71E-02
60	GO:0016168: chlorophyll binding	1.78E-02
61	GO:0008375: acetylglucosaminyltransferase activity	1.85E-02
62	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.85E-02
63	GO:0102483: scopolin beta-glucosidase activity	1.92E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	1.92E-02
65	GO:0008236: serine-type peptidase activity	1.99E-02
66	GO:0015238: drug transmembrane transporter activity	2.14E-02
67	GO:0008422: beta-glucosidase activity	2.60E-02
68	GO:0015293: symporter activity	3.18E-02
69	GO:0003824: catalytic activity	3.62E-02
70	GO:0045330: aspartyl esterase activity	3.89E-02
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.17E-02
72	GO:0016491: oxidoreductase activity	4.52E-02
73	GO:0005515: protein binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.64E-08
2	GO:0009535: chloroplast thylakoid membrane	7.04E-08
3	GO:0009507: chloroplast	1.93E-07
4	GO:0048046: apoplast	9.09E-07
5	GO:0009941: chloroplast envelope	1.97E-05
6	GO:0010319: stromule	1.14E-04
7	GO:0009543: chloroplast thylakoid lumen	1.42E-04
8	GO:0016021: integral component of membrane	2.92E-04
9	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.07E-04
10	GO:0042170: plastid membrane	3.07E-04
11	GO:0009528: plastid inner membrane	5.06E-04
12	GO:0005775: vacuolar lumen	7.24E-04
13	GO:0005576: extracellular region	7.33E-04
14	GO:0009570: chloroplast stroma	8.87E-04
15	GO:0009527: plastid outer membrane	9.59E-04
16	GO:0000123: histone acetyltransferase complex	2.09E-03
17	GO:0031977: thylakoid lumen	3.13E-03
18	GO:0000139: Golgi membrane	3.64E-03
19	GO:0009579: thylakoid	3.84E-03
20	GO:0055028: cortical microtubule	3.89E-03
21	GO:0005886: plasma membrane	3.93E-03
22	GO:0048471: perinuclear region of cytoplasm	4.30E-03
23	GO:0030095: chloroplast photosystem II	5.60E-03
24	GO:0031225: anchored component of membrane	5.75E-03
25	GO:0030076: light-harvesting complex	6.06E-03
26	GO:0009706: chloroplast inner membrane	6.48E-03
27	GO:0009654: photosystem II oxygen evolving complex	7.51E-03
28	GO:0042651: thylakoid membrane	7.51E-03
29	GO:0010287: plastoglobule	7.69E-03
30	GO:0005618: cell wall	7.82E-03
31	GO:0009532: plastid stroma	8.02E-03
32	GO:0005887: integral component of plasma membrane	9.45E-03
33	GO:0016020: membrane	9.64E-03
34	GO:0009522: photosystem I	1.19E-02
35	GO:0019898: extrinsic component of membrane	1.25E-02
36	GO:0009534: chloroplast thylakoid	1.69E-02
37	GO:0009707: chloroplast outer membrane	2.06E-02
38	GO:0000325: plant-type vacuole	2.29E-02
39	GO:0005794: Golgi apparatus	2.66E-02
40	GO:0031902: late endosome membrane	2.76E-02
41	GO:0009505: plant-type cell wall	4.26E-02