co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0015976: carbon utilization	1.88E-05
8	GO:0009658: chloroplast organization	9.46E-05
9	GO:0071277: cellular response to calcium ion	1.54E-04
10	GO:0043489: RNA stabilization	1.54E-04
11	GO:1904966: positive regulation of vitamin E biosynthetic process	1.54E-04
12	GO:0010442: guard cell morphogenesis	1.54E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	1.54E-04
14	GO:0042371: vitamin K biosynthetic process	1.54E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	1.54E-04
16	GO:0015979: photosynthesis	1.93E-04
17	GO:0006816: calcium ion transport	2.81E-04
18	GO:0010270: photosystem II oxygen evolving complex assembly	3.51E-04
19	GO:0052541: plant-type cell wall cellulose metabolic process	3.51E-04
20	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.51E-04
21	GO:0034755: iron ion transmembrane transport	3.51E-04
22	GO:0090506: axillary shoot meristem initiation	5.75E-04
23	GO:0010581: regulation of starch biosynthetic process	5.75E-04
24	GO:0043572: plastid fission	8.23E-04
25	GO:2001141: regulation of RNA biosynthetic process	8.23E-04
26	GO:0007231: osmosensory signaling pathway	8.23E-04
27	GO:0010088: phloem development	8.23E-04
28	GO:0019722: calcium-mediated signaling	8.91E-04
29	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.72E-04
30	GO:0000413: protein peptidyl-prolyl isomerization	1.04E-03
31	GO:0042335: cuticle development	1.04E-03
32	GO:0010037: response to carbon dioxide	1.09E-03
33	GO:0009765: photosynthesis, light harvesting	1.09E-03
34	GO:2000122: negative regulation of stomatal complex development	1.09E-03
35	GO:0033500: carbohydrate homeostasis	1.09E-03
36	GO:0006564: L-serine biosynthetic process	1.38E-03
37	GO:0010236: plastoquinone biosynthetic process	1.38E-03
38	GO:0016123: xanthophyll biosynthetic process	1.38E-03
39	GO:0016120: carotene biosynthetic process	1.38E-03
40	GO:0006869: lipid transport	1.39E-03
41	GO:0042549: photosystem II stabilization	1.70E-03
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.70E-03
43	GO:0000470: maturation of LSU-rRNA	1.70E-03
44	GO:0016554: cytidine to uridine editing	1.70E-03
45	GO:0006828: manganese ion transport	1.70E-03
46	GO:0010190: cytochrome b6f complex assembly	1.70E-03
47	GO:0007267: cell-cell signaling	1.74E-03
48	GO:0006694: steroid biosynthetic process	2.03E-03
49	GO:0010189: vitamin E biosynthetic process	2.03E-03
50	GO:0010019: chloroplast-nucleus signaling pathway	2.03E-03
51	GO:0010067: procambium histogenesis	2.03E-03
52	GO:0009610: response to symbiotic fungus	2.39E-03
53	GO:0018298: protein-chromophore linkage	2.54E-03
54	GO:0009704: de-etiolation	2.77E-03
55	GO:0030091: protein repair	2.77E-03
56	GO:0009631: cold acclimation	2.93E-03
57	GO:0032544: plastid translation	3.16E-03
58	GO:0009808: lignin metabolic process	3.16E-03
59	GO:0071482: cellular response to light stimulus	3.16E-03
60	GO:0019430: removal of superoxide radicals	3.16E-03
61	GO:0009637: response to blue light	3.21E-03
62	GO:0090333: regulation of stomatal closure	3.58E-03
63	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.58E-03
64	GO:0006839: mitochondrial transport	3.66E-03
65	GO:1900865: chloroplast RNA modification	4.01E-03
66	GO:0010380: regulation of chlorophyll biosynthetic process	4.01E-03
67	GO:0042761: very long-chain fatty acid biosynthetic process	4.01E-03
68	GO:0010114: response to red light	4.13E-03
69	GO:0048829: root cap development	4.46E-03
70	GO:0006949: syncytium formation	4.46E-03
71	GO:0008643: carbohydrate transport	4.47E-03
72	GO:0043085: positive regulation of catalytic activity	4.92E-03
73	GO:0006879: cellular iron ion homeostasis	4.92E-03
74	GO:0006352: DNA-templated transcription, initiation	4.92E-03
75	GO:0006415: translational termination	4.92E-03
76	GO:0010152: pollen maturation	5.41E-03
77	GO:0046777: protein autophosphorylation	5.48E-03
78	GO:0006813: potassium ion transport	5.56E-03
79	GO:0006457: protein folding	5.86E-03
80	GO:0006006: glucose metabolic process	5.91E-03
81	GO:0045454: cell redox homeostasis	6.33E-03
82	GO:0010223: secondary shoot formation	6.42E-03
83	GO:0010143: cutin biosynthetic process	6.42E-03
84	GO:0010020: chloroplast fission	6.42E-03
85	GO:0010207: photosystem II assembly	6.42E-03
86	GO:0019253: reductive pentose-phosphate cycle	6.42E-03
87	GO:0070588: calcium ion transmembrane transport	6.95E-03
88	GO:0007030: Golgi organization	6.95E-03
89	GO:0006071: glycerol metabolic process	7.49E-03
90	GO:0010025: wax biosynthetic process	7.49E-03
91	GO:0016042: lipid catabolic process	7.96E-03
92	GO:0000027: ribosomal large subunit assembly	8.05E-03
93	GO:0007010: cytoskeleton organization	8.05E-03
94	GO:0009768: photosynthesis, light harvesting in photosystem I	8.63E-03
95	GO:0006418: tRNA aminoacylation for protein translation	8.63E-03
96	GO:0010026: trichome differentiation	8.63E-03
97	GO:0003333: amino acid transmembrane transport	9.22E-03
98	GO:0080092: regulation of pollen tube growth	9.82E-03
99	GO:0030245: cellulose catabolic process	9.82E-03
100	GO:0001944: vasculature development	1.04E-02
101	GO:0010227: floral organ abscission	1.04E-02
102	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.04E-02
103	GO:0010089: xylem development	1.11E-02
104	GO:0042744: hydrogen peroxide catabolic process	1.13E-02
105	GO:0071555: cell wall organization	1.15E-02
106	GO:0042742: defense response to bacterium	1.15E-02
107	GO:0016117: carotenoid biosynthetic process	1.17E-02
108	GO:0000271: polysaccharide biosynthetic process	1.24E-02
109	GO:0010087: phloem or xylem histogenesis	1.24E-02
110	GO:0045489: pectin biosynthetic process	1.31E-02
111	GO:0007018: microtubule-based movement	1.37E-02
112	GO:0009451: RNA modification	1.40E-02
113	GO:0009556: microsporogenesis	1.44E-02
114	GO:0000302: response to reactive oxygen species	1.52E-02
115	GO:0016132: brassinosteroid biosynthetic process	1.52E-02
116	GO:0055114: oxidation-reduction process	1.55E-02
117	GO:1901657: glycosyl compound metabolic process	1.66E-02
118	GO:0009828: plant-type cell wall loosening	1.74E-02
119	GO:0071805: potassium ion transmembrane transport	1.81E-02
120	GO:0010027: thylakoid membrane organization	1.97E-02
121	GO:0009826: unidimensional cell growth	2.05E-02
122	GO:0009627: systemic acquired resistance	2.13E-02
123	GO:0015995: chlorophyll biosynthetic process	2.21E-02
124	GO:0016311: dephosphorylation	2.29E-02
125	GO:0009817: defense response to fungus, incompatible interaction	2.38E-02
126	GO:0048481: plant ovule development	2.38E-02
127	GO:0000160: phosphorelay signal transduction system	2.46E-02
128	GO:0010218: response to far red light	2.55E-02
129	GO:0009834: plant-type secondary cell wall biogenesis	2.55E-02
130	GO:0010119: regulation of stomatal movement	2.64E-02
131	GO:0006865: amino acid transport	2.72E-02
132	GO:0016051: carbohydrate biosynthetic process	2.81E-02
133	GO:0045087: innate immune response	2.81E-02
134	GO:0034599: cellular response to oxidative stress	2.90E-02
135	GO:0009664: plant-type cell wall organization	3.96E-02
136	GO:0042538: hyperosmotic salinity response	3.96E-02
137	GO:0009793: embryo development ending in seed dormancy	3.99E-02
138	GO:0009736: cytokinin-activated signaling pathway	4.17E-02
139	GO:0009809: lignin biosynthetic process	4.17E-02
140	GO:0006096: glycolytic process	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.42E-05
10	GO:0051920: peroxiredoxin activity	6.42E-05
11	GO:0016209: antioxidant activity	1.11E-04
12	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.54E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.54E-04
14	GO:0004617: phosphoglycerate dehydrogenase activity	3.51E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.51E-04
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.51E-04
17	GO:0004089: carbonate dehydratase activity	3.67E-04
18	GO:0008266: poly(U) RNA binding	4.15E-04
19	GO:0030267: glyoxylate reductase (NADP) activity	5.75E-04
20	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.75E-04
21	GO:0050734: hydroxycinnamoyltransferase activity	5.75E-04
22	GO:0002161: aminoacyl-tRNA editing activity	5.75E-04
23	GO:0008289: lipid binding	5.78E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.99E-04
25	GO:0016788: hydrolase activity, acting on ester bonds	6.88E-04
26	GO:0004176: ATP-dependent peptidase activity	6.92E-04
27	GO:0033612: receptor serine/threonine kinase binding	6.92E-04
28	GO:0016149: translation release factor activity, codon specific	8.23E-04
29	GO:0004659: prenyltransferase activity	1.09E-03
30	GO:0001053: plastid sigma factor activity	1.09E-03
31	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.09E-03
32	GO:0016987: sigma factor activity	1.09E-03
33	GO:0010328: auxin influx transmembrane transporter activity	1.09E-03
34	GO:0043495: protein anchor	1.09E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.38E-03
36	GO:0004040: amidase activity	1.38E-03
37	GO:0019843: rRNA binding	1.47E-03
38	GO:0016688: L-ascorbate peroxidase activity	1.70E-03
39	GO:0004130: cytochrome-c peroxidase activity	1.70E-03
40	GO:0008237: metallopeptidase activity	1.74E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.03E-03
42	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.03E-03
43	GO:0016168: chlorophyll binding	2.07E-03
44	GO:0019899: enzyme binding	2.39E-03
45	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.77E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	2.77E-03
47	GO:0004033: aldo-keto reductase (NADP) activity	2.77E-03
48	GO:0016301: kinase activity	2.83E-03
49	GO:0003747: translation release factor activity	3.58E-03
50	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.58E-03
51	GO:0005384: manganese ion transmembrane transporter activity	4.01E-03
52	GO:0005381: iron ion transmembrane transporter activity	4.01E-03
53	GO:0008047: enzyme activator activity	4.46E-03
54	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.92E-03
55	GO:0051287: NAD binding	4.99E-03
56	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.41E-03
57	GO:0000049: tRNA binding	5.41E-03
58	GO:0052689: carboxylic ester hydrolase activity	5.72E-03
59	GO:0015095: magnesium ion transmembrane transporter activity	5.91E-03
60	GO:0031072: heat shock protein binding	5.91E-03
61	GO:0005262: calcium channel activity	5.91E-03
62	GO:0005516: calmodulin binding	7.36E-03
63	GO:0031409: pigment binding	7.49E-03
64	GO:0008324: cation transmembrane transporter activity	8.63E-03
65	GO:0015079: potassium ion transmembrane transporter activity	8.63E-03
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.82E-03
67	GO:0022891: substrate-specific transmembrane transporter activity	1.04E-02
68	GO:0008810: cellulase activity	1.04E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.11E-02
70	GO:0004812: aminoacyl-tRNA ligase activity	1.17E-02
71	GO:0005102: receptor binding	1.17E-02
72	GO:0008080: N-acetyltransferase activity	1.31E-02
73	GO:0004791: thioredoxin-disulfide reductase activity	1.37E-02
74	GO:0008017: microtubule binding	1.44E-02
75	GO:0004518: nuclease activity	1.59E-02
76	GO:0000156: phosphorelay response regulator activity	1.66E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.66E-02
78	GO:0042802: identical protein binding	1.74E-02
79	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.81E-02
80	GO:0016597: amino acid binding	1.89E-02
81	GO:0004672: protein kinase activity	2.05E-02
82	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.13E-02
83	GO:0004601: peroxidase activity	2.13E-02
84	GO:0004683: calmodulin-dependent protein kinase activity	2.21E-02
85	GO:0102483: scopolin beta-glucosidase activity	2.21E-02
86	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.29E-02
87	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.43E-02
88	GO:0004222: metalloendopeptidase activity	2.55E-02
89	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.64E-02
90	GO:0003993: acid phosphatase activity	2.90E-02
91	GO:0008422: beta-glucosidase activity	2.99E-02
92	GO:0050661: NADP binding	3.09E-02
93	GO:0004871: signal transducer activity	3.31E-02
94	GO:0043621: protein self-association	3.56E-02
95	GO:0015293: symporter activity	3.66E-02
96	GO:0005524: ATP binding	3.68E-02
97	GO:0005509: calcium ion binding	3.73E-02
98	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.17E-02
99	GO:0004519: endonuclease activity	4.22E-02
100	GO:0003777: microtubule motor activity	4.48E-02
101	GO:0015171: amino acid transmembrane transporter activity	4.48E-02
102	GO:0004674: protein serine/threonine kinase activity	4.64E-02
103	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.80E-02
104	GO:0046872: metal ion binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	1.70E-16
2	GO:0009507: chloroplast	6.02E-14
3	GO:0009535: chloroplast thylakoid membrane	1.63E-11
4	GO:0009570: chloroplast stroma	5.01E-10
5	GO:0048046: apoplast	4.44E-08
6	GO:0009579: thylakoid	4.30E-07
7	GO:0009543: chloroplast thylakoid lumen	1.68E-05
8	GO:0031977: thylakoid lumen	3.46E-05
9	GO:0009534: chloroplast thylakoid	4.35E-05
10	GO:0009547: plastid ribosome	1.54E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.54E-04
12	GO:0005886: plasma membrane	2.77E-04
13	GO:0016020: membrane	4.27E-04
14	GO:0046658: anchored component of plasma membrane	5.27E-04
15	GO:0009706: chloroplast inner membrane	1.11E-03
16	GO:0009505: plant-type cell wall	1.21E-03
17	GO:0000793: condensed chromosome	1.70E-03
18	GO:0010319: stromule	1.74E-03
19	GO:0031225: anchored component of membrane	1.92E-03
20	GO:0000794: condensed nuclear chromosome	2.39E-03
21	GO:0009533: chloroplast stromal thylakoid	2.39E-03
22	GO:0016021: integral component of membrane	3.68E-03
23	GO:0009536: plastid	4.35E-03
24	GO:0016324: apical plasma membrane	4.46E-03
25	GO:0031969: chloroplast membrane	5.03E-03
26	GO:0000311: plastid large ribosomal subunit	5.41E-03
27	GO:0030095: chloroplast photosystem II	6.42E-03
28	GO:0030076: light-harvesting complex	6.95E-03
29	GO:0005875: microtubule associated complex	7.49E-03
30	GO:0043234: protein complex	7.49E-03
31	GO:0009654: photosystem II oxygen evolving complex	8.63E-03
32	GO:0042651: thylakoid membrane	8.63E-03
33	GO:0009506: plasmodesma	8.91E-03
34	GO:0010287: plastoglobule	9.38E-03
35	GO:0005871: kinesin complex	1.17E-02
36	GO:0009522: photosystem I	1.37E-02
37	GO:0009523: photosystem II	1.44E-02
38	GO:0019898: extrinsic component of membrane	1.44E-02
39	GO:0030529: intracellular ribonucleoprotein complex	1.97E-02
40	GO:0005576: extracellular region	2.33E-02
41	GO:0005874: microtubule	2.55E-02
42	GO:0022625: cytosolic large ribosomal subunit	2.77E-02
43	GO:0005618: cell wall	3.26E-02
44	GO:0005743: mitochondrial inner membrane	3.62E-02
45	GO:0005840: ribosome	4.37E-02