GO Enrichment Analysis of Co-expressed Genes with
AT4G23640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048867: stem cell fate determination | 0.00E+00 |
| 2 | GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 0.00E+00 |
| 3 | GO:0032012: regulation of ARF protein signal transduction | 1.55E-07 |
| 4 | GO:0016579: protein deubiquitination | 3.07E-06 |
| 5 | GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic | 2.30E-05 |
| 6 | GO:0010289: homogalacturonan biosynthetic process | 5.89E-05 |
| 7 | GO:0010372: positive regulation of gibberellin biosynthetic process | 5.89E-05 |
| 8 | GO:0045948: positive regulation of translational initiation | 5.89E-05 |
| 9 | GO:0010501: RNA secondary structure unwinding | 8.26E-05 |
| 10 | GO:0016255: attachment of GPI anchor to protein | 1.04E-04 |
| 11 | GO:0045836: positive regulation of meiotic nuclear division | 1.04E-04 |
| 12 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 1.04E-04 |
| 13 | GO:0080119: ER body organization | 1.55E-04 |
| 14 | GO:0051601: exocyst localization | 1.55E-04 |
| 15 | GO:0019048: modulation by virus of host morphology or physiology | 1.55E-04 |
| 16 | GO:0045962: positive regulation of development, heterochronic | 3.37E-04 |
| 17 | GO:0033962: cytoplasmic mRNA processing body assembly | 4.04E-04 |
| 18 | GO:0009846: pollen germination | 4.63E-04 |
| 19 | GO:0006401: RNA catabolic process | 4.74E-04 |
| 20 | GO:0006364: rRNA processing | 4.95E-04 |
| 21 | GO:0006402: mRNA catabolic process | 5.46E-04 |
| 22 | GO:0007155: cell adhesion | 5.46E-04 |
| 23 | GO:0006875: cellular metal ion homeostasis | 5.46E-04 |
| 24 | GO:0006417: regulation of translation | 5.47E-04 |
| 25 | GO:0006367: transcription initiation from RNA polymerase II promoter | 6.21E-04 |
| 26 | GO:0060321: acceptance of pollen | 6.21E-04 |
| 27 | GO:0048507: meristem development | 6.98E-04 |
| 28 | GO:0090332: stomatal closure | 7.77E-04 |
| 29 | GO:0008285: negative regulation of cell proliferation | 9.42E-04 |
| 30 | GO:0010152: pollen maturation | 1.03E-03 |
| 31 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 1.03E-03 |
| 32 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.06E-03 |
| 33 | GO:0034605: cellular response to heat | 1.20E-03 |
| 34 | GO:0010073: meristem maintenance | 1.59E-03 |
| 35 | GO:0006874: cellular calcium ion homeostasis | 1.59E-03 |
| 36 | GO:0051321: meiotic cell cycle | 1.70E-03 |
| 37 | GO:0009686: gibberellin biosynthetic process | 1.91E-03 |
| 38 | GO:0009306: protein secretion | 2.02E-03 |
| 39 | GO:0009561: megagametogenesis | 2.02E-03 |
| 40 | GO:0051028: mRNA transport | 2.13E-03 |
| 41 | GO:0008284: positive regulation of cell proliferation | 2.13E-03 |
| 42 | GO:0042147: retrograde transport, endosome to Golgi | 2.13E-03 |
| 43 | GO:0045489: pectin biosynthetic process | 2.36E-03 |
| 44 | GO:0009791: post-embryonic development | 2.60E-03 |
| 45 | GO:0031047: gene silencing by RNA | 2.84E-03 |
| 46 | GO:0016032: viral process | 2.84E-03 |
| 47 | GO:0009639: response to red or far red light | 3.09E-03 |
| 48 | GO:0006397: mRNA processing | 3.35E-03 |
| 49 | GO:0009627: systemic acquired resistance | 3.75E-03 |
| 50 | GO:0009631: cold acclimation | 4.60E-03 |
| 51 | GO:0016051: carbohydrate biosynthetic process | 4.90E-03 |
| 52 | GO:0006887: exocytosis | 5.52E-03 |
| 53 | GO:0006897: endocytosis | 5.52E-03 |
| 54 | GO:0009965: leaf morphogenesis | 6.33E-03 |
| 55 | GO:0009553: embryo sac development | 8.98E-03 |
| 56 | GO:0009742: brassinosteroid mediated signaling pathway | 9.56E-03 |
| 57 | GO:0009845: seed germination | 1.14E-02 |
| 58 | GO:0016036: cellular response to phosphate starvation | 1.28E-02 |
| 59 | GO:0006413: translational initiation | 1.28E-02 |
| 60 | GO:0040008: regulation of growth | 1.30E-02 |
| 61 | GO:0015031: protein transport | 1.46E-02 |
| 62 | GO:0006470: protein dephosphorylation | 1.48E-02 |
| 63 | GO:0009860: pollen tube growth | 1.94E-02 |
| 64 | GO:0048366: leaf development | 2.06E-02 |
| 65 | GO:0016192: vesicle-mediated transport | 2.22E-02 |
| 66 | GO:0006886: intracellular protein transport | 2.49E-02 |
| 67 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 3.45E-02 |
| 68 | GO:0045893: positive regulation of transcription, DNA-templated | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003729: mRNA binding | 1.89E-07 |
| 2 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 4.83E-07 |
| 3 | GO:0005086: ARF guanyl-nucleotide exchange factor activity | 7.42E-07 |
| 4 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.76E-06 |
| 5 | GO:0003923: GPI-anchor transamidase activity | 5.89E-05 |
| 6 | GO:0019829: cation-transporting ATPase activity | 1.04E-04 |
| 7 | GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity | 1.55E-04 |
| 8 | GO:0004004: ATP-dependent RNA helicase activity | 2.02E-04 |
| 9 | GO:0003723: RNA binding | 2.71E-04 |
| 10 | GO:0031369: translation initiation factor binding | 3.37E-04 |
| 11 | GO:0003730: mRNA 3'-UTR binding | 4.04E-04 |
| 12 | GO:0005085: guanyl-nucleotide exchange factor activity | 4.74E-04 |
| 13 | GO:0001104: RNA polymerase II transcription cofactor activity | 6.21E-04 |
| 14 | GO:0008026: ATP-dependent helicase activity | 7.35E-04 |
| 15 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 8.59E-04 |
| 16 | GO:0019888: protein phosphatase regulator activity | 1.12E-03 |
| 17 | GO:0005388: calcium-transporting ATPase activity | 1.12E-03 |
| 18 | GO:0000175: 3'-5'-exoribonuclease activity | 1.12E-03 |
| 19 | GO:0004540: ribonuclease activity | 1.70E-03 |
| 20 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.80E-03 |
| 21 | GO:0003727: single-stranded RNA binding | 2.02E-03 |
| 22 | GO:0004518: nuclease activity | 2.84E-03 |
| 23 | GO:0004722: protein serine/threonine phosphatase activity | 2.87E-03 |
| 24 | GO:0003697: single-stranded DNA binding | 4.90E-03 |
| 25 | GO:0000149: SNARE binding | 5.21E-03 |
| 26 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.18E-03 |
| 27 | GO:0003676: nucleic acid binding | 1.04E-02 |
| 28 | GO:0016758: transferase activity, transferring hexosyl groups | 1.05E-02 |
| 29 | GO:0003743: translation initiation factor activity | 1.50E-02 |
| 30 | GO:0046872: metal ion binding | 1.88E-02 |
| 31 | GO:0005515: protein binding | 1.94E-02 |
| 32 | GO:0008233: peptidase activity | 2.11E-02 |
| 33 | GO:0004497: monooxygenase activity | 2.14E-02 |
| 34 | GO:0016757: transferase activity, transferring glycosyl groups | 3.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000932: P-body | 3.26E-08 |
| 2 | GO:0010494: cytoplasmic stress granule | 9.14E-06 |
| 3 | GO:0016442: RISC complex | 2.30E-05 |
| 4 | GO:0042765: GPI-anchor transamidase complex | 1.04E-04 |
| 5 | GO:0000178: exosome (RNase complex) | 2.73E-04 |
| 6 | GO:0070847: core mediator complex | 3.37E-04 |
| 7 | GO:0030131: clathrin adaptor complex | 5.46E-04 |
| 8 | GO:0048471: perinuclear region of cytoplasm | 9.42E-04 |
| 9 | GO:0000159: protein phosphatase type 2A complex | 9.42E-04 |
| 10 | GO:0031307: integral component of mitochondrial outer membrane | 1.03E-03 |
| 11 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.03E-03 |
| 12 | GO:0005783: endoplasmic reticulum | 1.05E-03 |
| 13 | GO:0030659: cytoplasmic vesicle membrane | 1.20E-03 |
| 14 | GO:0005802: trans-Golgi network | 1.30E-03 |
| 15 | GO:0000145: exocyst | 2.84E-03 |
| 16 | GO:0016592: mediator complex | 2.84E-03 |
| 17 | GO:0005829: cytosol | 4.93E-03 |
| 18 | GO:0090406: pollen tube | 5.84E-03 |
| 19 | GO:0005856: cytoskeleton | 6.33E-03 |
| 20 | GO:0031966: mitochondrial membrane | 6.83E-03 |
| 21 | GO:0005635: nuclear envelope | 7.52E-03 |
| 22 | GO:0010008: endosome membrane | 8.24E-03 |
| 23 | GO:0005768: endosome | 1.03E-02 |
| 24 | GO:0009543: chloroplast thylakoid lumen | 1.07E-02 |
| 25 | GO:0005634: nucleus | 1.09E-02 |
| 26 | GO:0009524: phragmoplast | 1.11E-02 |
| 27 | GO:0000139: Golgi membrane | 1.56E-02 |
| 28 | GO:0005794: Golgi apparatus | 1.97E-02 |
| 29 | GO:0005737: cytoplasm | 2.11E-02 |
| 30 | GO:0005887: integral component of plasma membrane | 3.51E-02 |
| 31 | GO:0009506: plasmodesma | 4.50E-02 |
| 32 | GO:0005777: peroxisome | 4.69E-02 |