co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0090393: sepal giant cell development	0.00E+00
4	GO:0080167: response to karrikin	8.41E-07
5	GO:0071555: cell wall organization	2.30E-05
6	GO:0045489: pectin biosynthetic process	6.81E-05
7	GO:0010583: response to cyclopentenone	1.04E-04
8	GO:0048438: floral whorl development	1.46E-04
9	GO:0000066: mitochondrial ornithine transport	1.46E-04
10	GO:0019510: S-adenosylhomocysteine catabolic process	1.46E-04
11	GO:0071370: cellular response to gibberellin stimulus	1.46E-04
12	GO:0006659: phosphatidylserine biosynthetic process	1.46E-04
13	GO:0009813: flavonoid biosynthetic process	2.50E-04
14	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.33E-04
15	GO:2000123: positive regulation of stomatal complex development	3.33E-04
16	GO:0009629: response to gravity	3.33E-04
17	GO:1903338: regulation of cell wall organization or biogenesis	3.33E-04
18	GO:0033353: S-adenosylmethionine cycle	3.33E-04
19	GO:0007154: cell communication	3.33E-04
20	GO:0010220: positive regulation of vernalization response	3.33E-04
21	GO:0030036: actin cytoskeleton organization	3.41E-04
22	GO:0010167: response to nitrate	4.32E-04
23	GO:0006833: water transport	4.81E-04
24	GO:0015840: urea transport	5.47E-04
25	GO:0032877: positive regulation of DNA endoreduplication	7.83E-04
26	GO:0080170: hydrogen peroxide transmembrane transport	7.83E-04
27	GO:0051016: barbed-end actin filament capping	7.83E-04
28	GO:0000271: polysaccharide biosynthetic process	9.62E-04
29	GO:0034220: ion transmembrane transport	9.62E-04
30	GO:0009741: response to brassinosteroid	1.03E-03
31	GO:0009694: jasmonic acid metabolic process	1.04E-03
32	GO:0009765: photosynthesis, light harvesting	1.04E-03
33	GO:2000038: regulation of stomatal complex development	1.04E-03
34	GO:0006546: glycine catabolic process	1.04E-03
35	GO:0006021: inositol biosynthetic process	1.04E-03
36	GO:0009791: post-embryonic development	1.19E-03
37	GO:0071554: cell wall organization or biogenesis	1.27E-03
38	GO:0016123: xanthophyll biosynthetic process	1.31E-03
39	GO:0010375: stomatal complex patterning	1.31E-03
40	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.61E-03
41	GO:0000060: protein import into nucleus, translocation	1.61E-03
42	GO:0009635: response to herbicide	1.61E-03
43	GO:0007267: cell-cell signaling	1.62E-03
44	GO:0009554: megasporogenesis	1.93E-03
45	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.93E-03
46	GO:0010077: maintenance of inflorescence meristem identity	1.93E-03
47	GO:0045926: negative regulation of growth	1.93E-03
48	GO:0010076: maintenance of floral meristem identity	1.93E-03
49	GO:0017148: negative regulation of translation	1.93E-03
50	GO:0051510: regulation of unidimensional cell growth	2.27E-03
51	GO:0010218: response to far red light	2.60E-03
52	GO:0045010: actin nucleation	2.63E-03
53	GO:0031540: regulation of anthocyanin biosynthetic process	2.63E-03
54	GO:0052543: callose deposition in cell wall	2.63E-03
55	GO:0007155: cell adhesion	2.63E-03
56	GO:0006402: mRNA catabolic process	2.63E-03
57	GO:0016051: carbohydrate biosynthetic process	2.98E-03
58	GO:0022900: electron transport chain	3.00E-03
59	GO:0009056: catabolic process	3.40E-03
60	GO:0009638: phototropism	3.81E-03
61	GO:0010114: response to red light	3.83E-03
62	GO:0042546: cell wall biogenesis	3.98E-03
63	GO:0010192: mucilage biosynthetic process	4.23E-03
64	GO:0051555: flavonol biosynthetic process	4.23E-03
65	GO:0000272: polysaccharide catabolic process	4.67E-03
66	GO:0016024: CDP-diacylglycerol biosynthetic process	5.13E-03
67	GO:0010582: floral meristem determinacy	5.13E-03
68	GO:0015706: nitrate transport	5.13E-03
69	GO:0016925: protein sumoylation	5.13E-03
70	GO:0010224: response to UV-B	5.33E-03
71	GO:0005975: carbohydrate metabolic process	5.50E-03
72	GO:2000028: regulation of photoperiodism, flowering	5.60E-03
73	GO:0009725: response to hormone	5.60E-03
74	GO:0048768: root hair cell tip growth	6.09E-03
75	GO:0010143: cutin biosynthetic process	6.09E-03
76	GO:0005985: sucrose metabolic process	6.59E-03
77	GO:0009833: plant-type primary cell wall biogenesis	7.10E-03
78	GO:0009742: brassinosteroid mediated signaling pathway	7.76E-03
79	GO:0009695: jasmonic acid biosynthetic process	8.18E-03
80	GO:0009768: photosynthesis, light harvesting in photosystem I	8.18E-03
81	GO:0051260: protein homooligomerization	8.73E-03
82	GO:0031408: oxylipin biosynthetic process	8.73E-03
83	GO:0010017: red or far-red light signaling pathway	9.30E-03
84	GO:0006730: one-carbon metabolic process	9.30E-03
85	GO:0009411: response to UV	9.89E-03
86	GO:0019722: calcium-mediated signaling	1.05E-02
87	GO:0016117: carotenoid biosynthetic process	1.11E-02
88	GO:0006633: fatty acid biosynthetic process	1.15E-02
89	GO:0015991: ATP hydrolysis coupled proton transport	1.17E-02
90	GO:0080022: primary root development	1.17E-02
91	GO:0009958: positive gravitropism	1.24E-02
92	GO:0015986: ATP synthesis coupled proton transport	1.30E-02
93	GO:0008654: phospholipid biosynthetic process	1.37E-02
94	GO:0009739: response to gibberellin	1.42E-02
95	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.43E-02
96	GO:1901657: glycosyl compound metabolic process	1.57E-02
97	GO:0016126: sterol biosynthetic process	1.86E-02
98	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.94E-02
99	GO:0042128: nitrate assimilation	2.01E-02
100	GO:0010411: xyloglucan metabolic process	2.09E-02
101	GO:0016311: dephosphorylation	2.17E-02
102	GO:0016049: cell growth	2.17E-02
103	GO:0007049: cell cycle	2.20E-02
104	GO:0030244: cellulose biosynthetic process	2.25E-02
105	GO:0018298: protein-chromophore linkage	2.25E-02
106	GO:0009832: plant-type cell wall biogenesis	2.33E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.53E-02
108	GO:0009637: response to blue light	2.66E-02
109	GO:0009867: jasmonic acid mediated signaling pathway	2.66E-02
110	GO:0006839: mitochondrial transport	2.92E-02
111	GO:0009926: auxin polar transport	3.19E-02
112	GO:0009744: response to sucrose	3.19E-02
113	GO:0008643: carbohydrate transport	3.37E-02
114	GO:0006468: protein phosphorylation	3.52E-02
115	GO:0006855: drug transmembrane transport	3.56E-02
116	GO:0009414: response to water deprivation	3.64E-02
117	GO:0031347: regulation of defense response	3.65E-02
118	GO:0000165: MAPK cascade	3.65E-02
119	GO:0009809: lignin biosynthetic process	3.94E-02
120	GO:0009585: red, far-red light phototransduction	3.94E-02
121	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
122	GO:0006857: oligopeptide transport	4.14E-02
123	GO:0009733: response to auxin	4.32E-02
124	GO:0043086: negative regulation of catalytic activity	4.44E-02
125	GO:0009626: plant-type hypersensitive response	4.65E-02
126	GO:0009740: gibberellic acid mediated signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
6	GO:0045430: chalcone isomerase activity	1.71E-05
7	GO:0004013: adenosylhomocysteinase activity	1.46E-04
8	GO:0010313: phytochrome binding	1.46E-04
9	GO:0010291: carotene beta-ring hydroxylase activity	3.33E-04
10	GO:0004047: aminomethyltransferase activity	3.33E-04
11	GO:0000064: L-ornithine transmembrane transporter activity	3.33E-04
12	GO:0004512: inositol-3-phosphate synthase activity	3.33E-04
13	GO:0048531: beta-1,3-galactosyltransferase activity	3.33E-04
14	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.02E-04
15	GO:0001872: (1->3)-beta-D-glucan binding	7.83E-04
16	GO:0048027: mRNA 5'-UTR binding	7.83E-04
17	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.83E-04
18	GO:0015204: urea transmembrane transporter activity	1.04E-03
19	GO:0098599: palmitoyl hydrolase activity	1.04E-03
20	GO:0019901: protein kinase binding	1.19E-03
21	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.25E-03
22	GO:0031386: protein tag	1.31E-03
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.61E-03
24	GO:0008474: palmitoyl-(protein) hydrolase activity	1.61E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.61E-03
26	GO:0102229: amylopectin maltohydrolase activity	1.61E-03
27	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.62E-03
28	GO:0016413: O-acetyltransferase activity	1.71E-03
29	GO:0015250: water channel activity	1.81E-03
30	GO:0016161: beta-amylase activity	1.93E-03
31	GO:0030247: polysaccharide binding	2.13E-03
32	GO:0016621: cinnamoyl-CoA reductase activity	2.27E-03
33	GO:0004564: beta-fructofuranosidase activity	2.63E-03
34	GO:0015112: nitrate transmembrane transporter activity	3.81E-03
35	GO:0004575: sucrose alpha-glucosidase activity	3.81E-03
36	GO:0004860: protein kinase inhibitor activity	4.67E-03
37	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.67E-03
38	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.09E-03
39	GO:0051119: sugar transmembrane transporter activity	6.59E-03
40	GO:0004650: polygalacturonase activity	6.68E-03
41	GO:0031409: pigment binding	7.10E-03
42	GO:0016758: transferase activity, transferring hexosyl groups	8.93E-03
43	GO:0016760: cellulose synthase (UDP-forming) activity	9.89E-03
44	GO:0016829: lyase activity	9.93E-03
45	GO:0008017: microtubule binding	1.33E-02
46	GO:0004872: receptor activity	1.37E-02
47	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.43E-02
48	GO:0004518: nuclease activity	1.50E-02
49	GO:0051015: actin filament binding	1.57E-02
50	GO:0016759: cellulose synthase activity	1.64E-02
51	GO:0016791: phosphatase activity	1.64E-02
52	GO:0008483: transaminase activity	1.72E-02
53	GO:0005200: structural constituent of cytoskeleton	1.72E-02
54	GO:0004672: protein kinase activity	1.83E-02
55	GO:0046982: protein heterodimerization activity	1.93E-02
56	GO:0016168: chlorophyll binding	1.94E-02
57	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.09E-02
58	GO:0102483: scopolin beta-glucosidase activity	2.09E-02
59	GO:0016757: transferase activity, transferring glycosyl groups	2.21E-02
60	GO:0015238: drug transmembrane transporter activity	2.33E-02
61	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
62	GO:0008422: beta-glucosidase activity	2.83E-02
63	GO:0004185: serine-type carboxypeptidase activity	3.19E-02
64	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-02
65	GO:0015293: symporter activity	3.47E-02
66	GO:0051287: NAD binding	3.65E-02
67	GO:0016298: lipase activity	4.04E-02
68	GO:0004674: protein serine/threonine kinase activity	4.09E-02
69	GO:0005215: transporter activity	4.24E-02
70	GO:0003777: microtubule motor activity	4.24E-02
71	GO:0045735: nutrient reservoir activity	4.44E-02
72	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.75E-02
73	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.75E-02
74	GO:0003779: actin binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	5.73E-09
2	GO:0009505: plant-type cell wall	6.67E-06
3	GO:0046658: anchored component of plasma membrane	5.69E-05
4	GO:0005886: plasma membrane	3.27E-04
5	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	3.33E-04
6	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.47E-04
7	GO:0005576: extracellular region	6.79E-04
8	GO:0005775: vacuolar lumen	7.83E-04
9	GO:0009506: plasmodesma	1.11E-03
10	GO:0016021: integral component of membrane	1.27E-03
11	GO:0009705: plant-type vacuole membrane	2.00E-03
12	GO:0042807: central vacuole	2.27E-03
13	GO:0005794: Golgi apparatus	2.71E-03
14	GO:0048046: apoplast	2.73E-03
15	GO:0000326: protein storage vacuole	3.00E-03
16	GO:0000139: Golgi membrane	4.51E-03
17	GO:0048471: perinuclear region of cytoplasm	4.67E-03
18	GO:0030076: light-harvesting complex	6.59E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	6.59E-03
20	GO:0005753: mitochondrial proton-transporting ATP synthase complex	6.59E-03
21	GO:0005618: cell wall	9.94E-03
22	GO:0005887: integral component of plasma membrane	1.10E-02
23	GO:0009522: photosystem I	1.30E-02
24	GO:0009523: photosystem II	1.37E-02
25	GO:0016020: membrane	1.43E-02
26	GO:0030529: intracellular ribonucleoprotein complex	1.86E-02
27	GO:0005774: vacuolar membrane	2.28E-02
28	GO:0000325: plant-type vacuole	2.49E-02
29	GO:0000786: nucleosome	2.58E-02
30	GO:0005783: endoplasmic reticulum	2.92E-02
31	GO:0031902: late endosome membrane	3.01E-02
32	GO:0005856: cytoskeleton	3.47E-02
33	GO:0009941: chloroplast envelope	3.79E-02
34	GO:0005773: vacuole	4.62E-02