co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:1905499: trichome papilla formation	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	6.84E-08
5	GO:0009735: response to cytokinin	1.25E-06
6	GO:0042335: cuticle development	1.64E-06
7	GO:0090391: granum assembly	3.82E-06
8	GO:0016042: lipid catabolic process	3.16E-05
9	GO:0010196: nonphotochemical quenching	7.70E-05
10	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.30E-04
11	GO:0005991: trehalose metabolic process	1.44E-04
12	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.44E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	1.44E-04
14	GO:0080051: cutin transport	1.44E-04
15	GO:0033481: galacturonate biosynthetic process	1.44E-04
16	GO:0015995: chlorophyll biosynthetic process	1.97E-04
17	GO:0015908: fatty acid transport	3.29E-04
18	GO:0043255: regulation of carbohydrate biosynthetic process	3.29E-04
19	GO:0010115: regulation of abscisic acid biosynthetic process	3.29E-04
20	GO:0001736: establishment of planar polarity	3.29E-04
21	GO:0010167: response to nitrate	4.23E-04
22	GO:0010025: wax biosynthetic process	4.72E-04
23	GO:0015714: phosphoenolpyruvate transport	5.40E-04
24	GO:0016998: cell wall macromolecule catabolic process	6.31E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	7.73E-04
26	GO:1901332: negative regulation of lateral root development	7.73E-04
27	GO:0015979: photosynthesis	9.73E-04
28	GO:0010182: sugar mediated signaling pathway	1.01E-03
29	GO:0010222: stem vascular tissue pattern formation	1.02E-03
30	GO:0045727: positive regulation of translation	1.02E-03
31	GO:0015994: chlorophyll metabolic process	1.02E-03
32	GO:0015713: phosphoglycerate transport	1.02E-03
33	GO:0010021: amylopectin biosynthetic process	1.02E-03
34	GO:0006869: lipid transport	1.20E-03
35	GO:0006665: sphingolipid metabolic process	1.29E-03
36	GO:0080110: sporopollenin biosynthetic process	1.29E-03
37	GO:0006564: L-serine biosynthetic process	1.29E-03
38	GO:0010236: plastoquinone biosynthetic process	1.29E-03
39	GO:0010405: arabinogalactan protein metabolic process	1.59E-03
40	GO:0009913: epidermal cell differentiation	1.59E-03
41	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.59E-03
42	GO:0010337: regulation of salicylic acid metabolic process	1.59E-03
43	GO:0006561: proline biosynthetic process	1.59E-03
44	GO:0010027: thylakoid membrane organization	1.78E-03
45	GO:0010019: chloroplast-nucleus signaling pathway	1.91E-03
46	GO:0010189: vitamin E biosynthetic process	1.91E-03
47	GO:0009395: phospholipid catabolic process	2.24E-03
48	GO:0009772: photosynthetic electron transport in photosystem II	2.24E-03
49	GO:0050829: defense response to Gram-negative bacterium	2.24E-03
50	GO:0006400: tRNA modification	2.24E-03
51	GO:0010311: lateral root formation	2.43E-03
52	GO:0031540: regulation of anthocyanin biosynthetic process	2.60E-03
53	GO:0055075: potassium ion homeostasis	2.60E-03
54	GO:0048564: photosystem I assembly	2.60E-03
55	GO:0008610: lipid biosynthetic process	2.60E-03
56	GO:0070413: trehalose metabolism in response to stress	2.60E-03
57	GO:0032544: plastid translation	2.96E-03
58	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.35E-03
59	GO:0009658: chloroplast organization	3.39E-03
60	GO:0042761: very long-chain fatty acid biosynthetic process	3.76E-03
61	GO:0048829: root cap development	4.18E-03
62	GO:0006032: chitin catabolic process	4.18E-03
63	GO:0009688: abscisic acid biosynthetic process	4.18E-03
64	GO:0048765: root hair cell differentiation	4.61E-03
65	GO:0000038: very long-chain fatty acid metabolic process	4.61E-03
66	GO:0008285: negative regulation of cell proliferation	4.61E-03
67	GO:0009750: response to fructose	4.61E-03
68	GO:0009809: lignin biosynthetic process	5.05E-03
69	GO:0006820: anion transport	5.06E-03
70	GO:0016024: CDP-diacylglycerol biosynthetic process	5.06E-03
71	GO:0015706: nitrate transport	5.06E-03
72	GO:0010229: inflorescence development	5.52E-03
73	GO:0009718: anthocyanin-containing compound biosynthetic process	5.52E-03
74	GO:0010588: cotyledon vascular tissue pattern formation	5.52E-03
75	GO:0010628: positive regulation of gene expression	5.52E-03
76	GO:0048467: gynoecium development	6.00E-03
77	GO:0010143: cutin biosynthetic process	6.00E-03
78	GO:0010053: root epidermal cell differentiation	6.50E-03
79	GO:0009225: nucleotide-sugar metabolic process	6.50E-03
80	GO:0009825: multidimensional cell growth	6.50E-03
81	GO:0071732: cellular response to nitric oxide	6.50E-03
82	GO:0032259: methylation	6.90E-03
83	GO:0006833: water transport	7.00E-03
84	GO:0019762: glucosinolate catabolic process	7.00E-03
85	GO:0042023: DNA endoreduplication	7.00E-03
86	GO:0009624: response to nematode	7.18E-03
87	GO:0005992: trehalose biosynthetic process	7.52E-03
88	GO:0010073: meristem maintenance	8.06E-03
89	GO:0019953: sexual reproduction	8.06E-03
90	GO:0007017: microtubule-based process	8.06E-03
91	GO:0009695: jasmonic acid biosynthetic process	8.06E-03
92	GO:0009768: photosynthesis, light harvesting in photosystem I	8.06E-03
93	GO:0009269: response to desiccation	8.61E-03
94	GO:0031408: oxylipin biosynthetic process	8.61E-03
95	GO:0003333: amino acid transmembrane transport	8.61E-03
96	GO:0030245: cellulose catabolic process	9.17E-03
97	GO:0010227: floral organ abscission	9.75E-03
98	GO:0071369: cellular response to ethylene stimulus	9.75E-03
99	GO:0042744: hydrogen peroxide catabolic process	1.02E-02
100	GO:0010584: pollen exine formation	1.03E-02
101	GO:0010091: trichome branching	1.03E-02
102	GO:0034220: ion transmembrane transport	1.16E-02
103	GO:0009958: positive gravitropism	1.22E-02
104	GO:0010150: leaf senescence	1.24E-02
105	GO:0015986: ATP synthesis coupled proton transport	1.28E-02
106	GO:0019252: starch biosynthetic process	1.35E-02
107	GO:0000302: response to reactive oxygen species	1.41E-02
108	GO:0071281: cellular response to iron ion	1.55E-02
109	GO:0010252: auxin homeostasis	1.62E-02
110	GO:0006810: transport	1.78E-02
111	GO:0045893: positive regulation of transcription, DNA-templated	1.80E-02
112	GO:0016126: sterol biosynthetic process	1.84E-02
113	GO:0005975: carbohydrate metabolic process	1.87E-02
114	GO:0009627: systemic acquired resistance	1.99E-02
115	GO:0010411: xyloglucan metabolic process	2.06E-02
116	GO:0009651: response to salt stress	2.09E-02
117	GO:0030244: cellulose biosynthetic process	2.22E-02
118	GO:0018298: protein-chromophore linkage	2.22E-02
119	GO:0000160: phosphorelay signal transduction system	2.30E-02
120	GO:0009832: plant-type cell wall biogenesis	2.30E-02
121	GO:0009407: toxin catabolic process	2.38E-02
122	GO:0010218: response to far red light	2.38E-02
123	GO:0080167: response to karrikin	2.39E-02
124	GO:0009631: cold acclimation	2.46E-02
125	GO:0006865: amino acid transport	2.54E-02
126	GO:0009637: response to blue light	2.63E-02
127	GO:0034599: cellular response to oxidative stress	2.71E-02
128	GO:0010114: response to red light	3.15E-02
129	GO:0009926: auxin polar transport	3.15E-02
130	GO:0008283: cell proliferation	3.15E-02
131	GO:0009640: photomorphogenesis	3.15E-02
132	GO:0042546: cell wall biogenesis	3.23E-02
133	GO:0009636: response to toxic substance	3.42E-02
134	GO:0006855: drug transmembrane transport	3.51E-02
135	GO:0009408: response to heat	3.53E-02
136	GO:0071555: cell wall organization	3.66E-02
137	GO:0016310: phosphorylation	3.78E-02
138	GO:0006364: rRNA processing	3.89E-02
139	GO:0009736: cytokinin-activated signaling pathway	3.89E-02
140	GO:0006857: oligopeptide transport	4.08E-02
141	GO:0009734: auxin-activated signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0016788: hydrolase activity, acting on ester bonds	6.74E-06
6	GO:0052689: carboxylic ester hydrolase activity	1.56E-05
7	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.44E-04
8	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.44E-04
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.44E-04
10	GO:0004321: fatty-acyl-CoA synthase activity	1.44E-04
11	GO:0015245: fatty acid transporter activity	1.44E-04
12	GO:0047746: chlorophyllase activity	3.29E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	3.29E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	3.29E-04
15	GO:0016630: protochlorophyllide reductase activity	3.29E-04
16	GO:0005528: FK506 binding	5.23E-04
17	GO:0004373: glycogen (starch) synthase activity	5.40E-04
18	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	7.73E-04
19	GO:0016851: magnesium chelatase activity	7.73E-04
20	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.73E-04
21	GO:0015120: phosphoglycerate transmembrane transporter activity	1.02E-03
22	GO:0004659: prenyltransferase activity	1.02E-03
23	GO:0010011: auxin binding	1.02E-03
24	GO:0010328: auxin influx transmembrane transporter activity	1.02E-03
25	GO:0016746: transferase activity, transferring acyl groups	1.02E-03
26	GO:0004506: squalene monooxygenase activity	1.02E-03
27	GO:0009011: starch synthase activity	1.02E-03
28	GO:0050378: UDP-glucuronate 4-epimerase activity	1.02E-03
29	GO:0050662: coenzyme binding	1.09E-03
30	GO:0008381: mechanically-gated ion channel activity	1.29E-03
31	GO:0009922: fatty acid elongase activity	1.29E-03
32	GO:0003959: NADPH dehydrogenase activity	1.29E-03
33	GO:0004518: nuclease activity	1.32E-03
34	GO:0016791: phosphatase activity	1.50E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.59E-03
36	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.59E-03
37	GO:0004130: cytochrome-c peroxidase activity	1.59E-03
38	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.59E-03
39	GO:0016688: L-ascorbate peroxidase activity	1.59E-03
40	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.91E-03
41	GO:0052747: sinapyl alcohol dehydrogenase activity	2.60E-03
42	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-03
43	GO:0008168: methyltransferase activity	3.23E-03
44	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.35E-03
45	GO:0016207: 4-coumarate-CoA ligase activity	3.35E-03
46	GO:0015112: nitrate transmembrane transporter activity	3.76E-03
47	GO:0030234: enzyme regulator activity	4.18E-03
48	GO:0004568: chitinase activity	4.18E-03
49	GO:0015293: symporter activity	4.22E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.37E-03
51	GO:0004672: protein kinase activity	5.02E-03
52	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.06E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.21E-03
54	GO:0030246: carbohydrate binding	5.36E-03
55	GO:0004565: beta-galactosidase activity	5.52E-03
56	GO:0004022: alcohol dehydrogenase (NAD) activity	5.52E-03
57	GO:0008266: poly(U) RNA binding	6.00E-03
58	GO:0031409: pigment binding	7.00E-03
59	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.00E-03
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.00E-03
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.00E-03
62	GO:0030570: pectate lyase activity	9.75E-03
63	GO:0008810: cellulase activity	9.75E-03
64	GO:0008289: lipid binding	1.11E-02
65	GO:0003824: catalytic activity	1.15E-02
66	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.22E-02
67	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.41E-02
68	GO:0016491: oxidoreductase activity	1.51E-02
69	GO:0000156: phosphorelay response regulator activity	1.55E-02
70	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.69E-02
71	GO:0005200: structural constituent of cytoskeleton	1.69E-02
72	GO:0016597: amino acid binding	1.76E-02
73	GO:0015250: water channel activity	1.84E-02
74	GO:0016168: chlorophyll binding	1.91E-02
75	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.99E-02
76	GO:0004683: calmodulin-dependent protein kinase activity	2.06E-02
77	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.06E-02
78	GO:0030247: polysaccharide binding	2.06E-02
79	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.14E-02
80	GO:0003993: acid phosphatase activity	2.71E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	2.88E-02
82	GO:0004364: glutathione transferase activity	3.06E-02
83	GO:0051287: NAD binding	3.60E-02
84	GO:0009055: electron carrier activity	3.78E-02
85	GO:0004674: protein serine/threonine kinase activity	3.96E-02
86	GO:0016298: lipase activity	3.98E-02
87	GO:0003690: double-stranded DNA binding	3.98E-02
88	GO:0005215: transporter activity	4.14E-02
89	GO:0015171: amino acid transmembrane transporter activity	4.18E-02
90	GO:0045735: nutrient reservoir activity	4.38E-02
91	GO:0016874: ligase activity	4.78E-02
92	GO:0030599: pectinesterase activity	4.78E-02
93	GO:0022857: transmembrane transporter activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	7.77E-11
3	GO:0048046: apoplast	2.39E-08
4	GO:0009535: chloroplast thylakoid membrane	1.24E-07
5	GO:0009507: chloroplast	7.90E-07
6	GO:0009579: thylakoid	3.18E-05
7	GO:0005886: plasma membrane	5.73E-05
8	GO:0009941: chloroplast envelope	1.36E-04
9	GO:0009923: fatty acid elongase complex	1.44E-04
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.53E-04
11	GO:0005618: cell wall	3.05E-04
12	GO:0046658: anchored component of plasma membrane	4.53E-04
13	GO:0010007: magnesium chelatase complex	5.40E-04
14	GO:0009897: external side of plasma membrane	5.40E-04
15	GO:0016021: integral component of membrane	6.19E-04
16	GO:0015630: microtubule cytoskeleton	7.73E-04
17	GO:0009505: plant-type cell wall	9.96E-04
18	GO:0010287: plastoglobule	1.21E-03
19	GO:0005576: extracellular region	1.22E-03
20	GO:0009543: chloroplast thylakoid lumen	1.30E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.59E-03
22	GO:0009986: cell surface	2.24E-03
23	GO:0009501: amyloplast	2.60E-03
24	GO:0009570: chloroplast stroma	3.34E-03
25	GO:0005578: proteinaceous extracellular matrix	5.52E-03
26	GO:0030095: chloroplast photosystem II	6.00E-03
27	GO:0016020: membrane	6.47E-03
28	GO:0030076: light-harvesting complex	6.50E-03
29	GO:0009706: chloroplast inner membrane	7.18E-03
30	GO:0009654: photosystem II oxygen evolving complex	8.06E-03
31	GO:0009522: photosystem I	1.28E-02
32	GO:0019898: extrinsic component of membrane	1.35E-02
33	GO:0032580: Golgi cisterna membrane	1.62E-02
34	GO:0010319: stromule	1.69E-02
35	GO:0000151: ubiquitin ligase complex	2.22E-02
36	GO:0031969: chloroplast membrane	2.39E-02
37	GO:0031225: anchored component of membrane	2.65E-02
38	GO:0031977: thylakoid lumen	2.97E-02
39	GO:0005768: endosome	3.21E-02