co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.29E-07
6	GO:0006810: transport	4.76E-06
7	GO:0006833: water transport	2.87E-05
8	GO:0015979: photosynthesis	3.62E-05
9	GO:0016120: carotene biosynthetic process	3.81E-05
10	GO:0034220: ion transmembrane transport	8.95E-05
11	GO:0046620: regulation of organ growth	1.35E-04
12	GO:0030974: thiamine pyrophosphate transport	1.75E-04
13	GO:0071277: cellular response to calcium ion	1.75E-04
14	GO:0000481: maturation of 5S rRNA	1.75E-04
15	GO:0033481: galacturonate biosynthetic process	1.75E-04
16	GO:0034337: RNA folding	1.75E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	1.75E-04
18	GO:0051180: vitamin transport	1.75E-04
19	GO:0046520: sphingoid biosynthetic process	1.75E-04
20	GO:0009416: response to light stimulus	2.65E-04
21	GO:0043255: regulation of carbohydrate biosynthetic process	3.96E-04
22	GO:0015893: drug transport	3.96E-04
23	GO:0010115: regulation of abscisic acid biosynthetic process	3.96E-04
24	GO:0001736: establishment of planar polarity	3.96E-04
25	GO:0010024: phytochromobilin biosynthetic process	3.96E-04
26	GO:0010143: cutin biosynthetic process	4.96E-04
27	GO:0009926: auxin polar transport	6.19E-04
28	GO:0006788: heme oxidation	6.47E-04
29	GO:0015714: phosphoenolpyruvate transport	6.47E-04
30	GO:0016998: cell wall macromolecule catabolic process	8.23E-04
31	GO:0071484: cellular response to light intensity	9.23E-04
32	GO:0080170: hydrogen peroxide transmembrane transport	9.23E-04
33	GO:0009650: UV protection	9.23E-04
34	GO:0009414: response to water deprivation	1.06E-03
35	GO:0031122: cytoplasmic microtubule organization	1.22E-03
36	GO:0015713: phosphoglycerate transport	1.22E-03
37	GO:0006546: glycine catabolic process	1.22E-03
38	GO:0010037: response to carbon dioxide	1.22E-03
39	GO:0015976: carbon utilization	1.22E-03
40	GO:0006183: GTP biosynthetic process	1.22E-03
41	GO:0045727: positive regulation of translation	1.22E-03
42	GO:2000122: negative regulation of stomatal complex development	1.22E-03
43	GO:0006461: protein complex assembly	1.56E-03
44	GO:0009107: lipoate biosynthetic process	1.56E-03
45	GO:0030308: negative regulation of cell growth	1.56E-03
46	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.91E-03
47	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.91E-03
48	GO:0010337: regulation of salicylic acid metabolic process	1.91E-03
49	GO:0006561: proline biosynthetic process	1.91E-03
50	GO:0010405: arabinogalactan protein metabolic process	1.91E-03
51	GO:0048827: phyllome development	1.91E-03
52	GO:0042549: photosystem II stabilization	1.91E-03
53	GO:0009913: epidermal cell differentiation	1.91E-03
54	GO:0009409: response to cold	2.02E-03
55	GO:0006694: steroid biosynthetic process	2.30E-03
56	GO:0010019: chloroplast-nucleus signaling pathway	2.30E-03
57	GO:0080086: stamen filament development	2.30E-03
58	GO:0050829: defense response to Gram-negative bacterium	2.70E-03
59	GO:1900057: positive regulation of leaf senescence	2.70E-03
60	GO:0010444: guard mother cell differentiation	2.70E-03
61	GO:0009395: phospholipid catabolic process	2.70E-03
62	GO:0009772: photosynthetic electron transport in photosystem II	2.70E-03
63	GO:0010411: xyloglucan metabolic process	2.75E-03
64	GO:0030244: cellulose biosynthetic process	3.04E-03
65	GO:0018298: protein-chromophore linkage	3.04E-03
66	GO:0030091: protein repair	3.13E-03
67	GO:0009704: de-etiolation	3.13E-03
68	GO:0032508: DNA duplex unwinding	3.13E-03
69	GO:0008610: lipid biosynthetic process	3.13E-03
70	GO:0009834: plant-type secondary cell wall biogenesis	3.35E-03
71	GO:0032544: plastid translation	3.58E-03
72	GO:0009808: lignin metabolic process	3.58E-03
73	GO:0009827: plant-type cell wall modification	3.58E-03
74	GO:0009657: plastid organization	3.58E-03
75	GO:0009637: response to blue light	3.84E-03
76	GO:0010206: photosystem II repair	4.05E-03
77	GO:0090333: regulation of stomatal closure	4.05E-03
78	GO:0071555: cell wall organization	4.19E-03
79	GO:0006839: mitochondrial transport	4.38E-03
80	GO:0010205: photoinhibition	4.54E-03
81	GO:0009638: phototropism	4.54E-03
82	GO:0009735: response to cytokinin	4.57E-03
83	GO:0009658: chloroplast organization	4.83E-03
84	GO:0006032: chitin catabolic process	5.05E-03
85	GO:0009688: abscisic acid biosynthetic process	5.05E-03
86	GO:0048829: root cap development	5.05E-03
87	GO:0019538: protein metabolic process	5.05E-03
88	GO:0009733: response to auxin	5.13E-03
89	GO:0042546: cell wall biogenesis	5.15E-03
90	GO:0009073: aromatic amino acid family biosynthetic process	5.58E-03
91	GO:0009750: response to fructose	5.58E-03
92	GO:0048765: root hair cell differentiation	5.58E-03
93	GO:0000038: very long-chain fatty acid metabolic process	5.58E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	6.13E-03
95	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.62E-03
96	GO:0010628: positive regulation of gene expression	6.70E-03
97	GO:0010229: inflorescence development	6.70E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	6.70E-03
99	GO:0009725: response to hormone	6.70E-03
100	GO:0010207: photosystem II assembly	7.28E-03
101	GO:0010540: basipetal auxin transport	7.28E-03
102	GO:0055085: transmembrane transport	7.51E-03
103	GO:0010053: root epidermal cell differentiation	7.89E-03
104	GO:0009225: nucleotide-sugar metabolic process	7.89E-03
105	GO:0009825: multidimensional cell growth	7.89E-03
106	GO:0010167: response to nitrate	7.89E-03
107	GO:0010025: wax biosynthetic process	8.51E-03
108	GO:0006636: unsaturated fatty acid biosynthetic process	8.51E-03
109	GO:0005975: carbohydrate metabolic process	8.68E-03
110	GO:0006869: lipid transport	8.97E-03
111	GO:0006487: protein N-linked glycosylation	9.15E-03
112	GO:0009624: response to nematode	9.49E-03
113	GO:0007017: microtubule-based process	9.80E-03
114	GO:0009768: photosynthesis, light harvesting in photosystem I	9.80E-03
115	GO:0016042: lipid catabolic process	1.00E-02
116	GO:0031408: oxylipin biosynthetic process	1.05E-02
117	GO:0003333: amino acid transmembrane transport	1.05E-02
118	GO:0030245: cellulose catabolic process	1.12E-02
119	GO:0009411: response to UV	1.19E-02
120	GO:0009651: response to salt stress	1.20E-02
121	GO:0042127: regulation of cell proliferation	1.26E-02
122	GO:0019722: calcium-mediated signaling	1.26E-02
123	GO:0016117: carotenoid biosynthetic process	1.33E-02
124	GO:0042335: cuticle development	1.41E-02
125	GO:0010182: sugar mediated signaling pathway	1.49E-02
126	GO:0045489: pectin biosynthetic process	1.49E-02
127	GO:0009958: positive gravitropism	1.49E-02
128	GO:0007165: signal transduction	1.50E-02
129	GO:0006633: fatty acid biosynthetic process	1.50E-02
130	GO:0015986: ATP synthesis coupled proton transport	1.56E-02
131	GO:0040008: regulation of growth	1.57E-02
132	GO:0009734: auxin-activated signaling pathway	1.61E-02
133	GO:0048825: cotyledon development	1.64E-02
134	GO:0045490: pectin catabolic process	1.65E-02
135	GO:0000302: response to reactive oxygen species	1.72E-02
136	GO:0016132: brassinosteroid biosynthetic process	1.72E-02
137	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.72E-02
138	GO:0071554: cell wall organization or biogenesis	1.72E-02
139	GO:0009630: gravitropism	1.81E-02
140	GO:1901657: glycosyl compound metabolic process	1.89E-02
141	GO:0007267: cell-cell signaling	2.06E-02
142	GO:0010027: thylakoid membrane organization	2.24E-02
143	GO:0009911: positive regulation of flower development	2.24E-02
144	GO:0042128: nitrate assimilation	2.42E-02
145	GO:0048573: photoperiodism, flowering	2.52E-02
146	GO:0015995: chlorophyll biosynthetic process	2.52E-02
147	GO:0045893: positive regulation of transcription, DNA-templated	2.56E-02
148	GO:0009817: defense response to fungus, incompatible interaction	2.71E-02
149	GO:0010311: lateral root formation	2.80E-02
150	GO:0009407: toxin catabolic process	2.90E-02
151	GO:0010218: response to far red light	2.90E-02
152	GO:0009631: cold acclimation	3.00E-02
153	GO:0010119: regulation of stomatal movement	3.00E-02
154	GO:0006865: amino acid transport	3.10E-02
155	GO:0080167: response to karrikin	3.16E-02
156	GO:0034599: cellular response to oxidative stress	3.31E-02
157	GO:0009640: photomorphogenesis	3.84E-02
158	GO:0010114: response to red light	3.84E-02
159	GO:0009744: response to sucrose	3.84E-02
160	GO:0009644: response to high light intensity	4.06E-02
161	GO:0009636: response to toxic substance	4.17E-02
162	GO:0009737: response to abscisic acid	4.61E-02
163	GO:0009408: response to heat	4.65E-02
164	GO:0009809: lignin biosynthetic process	4.74E-02
165	GO:0006364: rRNA processing	4.74E-02
166	GO:0009585: red, far-red light phototransduction	4.74E-02
167	GO:0006857: oligopeptide transport	4.97E-02
168	GO:0009753: response to jasmonic acid	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0045436: lycopene beta cyclase activity	0.00E+00
6	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
7	GO:0004871: signal transducer activity	4.62E-05
8	GO:0008568: microtubule-severing ATPase activity	1.75E-04
9	GO:0000170: sphingosine hydroxylase activity	1.75E-04
10	GO:0090422: thiamine pyrophosphate transporter activity	1.75E-04
11	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.75E-04
12	GO:0015250: water channel activity	2.30E-04
13	GO:0003938: IMP dehydrogenase activity	3.96E-04
14	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.96E-04
15	GO:0042284: sphingolipid delta-4 desaturase activity	3.96E-04
16	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.76E-04
17	GO:0050734: hydroxycinnamoyltransferase activity	6.47E-04
18	GO:0016992: lipoate synthase activity	6.47E-04
19	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9.23E-04
20	GO:0001872: (1->3)-beta-D-glucan binding	9.23E-04
21	GO:0030570: pectate lyase activity	9.77E-04
22	GO:0050378: UDP-glucuronate 4-epimerase activity	1.22E-03
23	GO:0004392: heme oxygenase (decyclizing) activity	1.22E-03
24	GO:0015120: phosphoglycerate transmembrane transporter activity	1.22E-03
25	GO:0010011: auxin binding	1.22E-03
26	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.22E-03
27	GO:0010328: auxin influx transmembrane transporter activity	1.22E-03
28	GO:0052793: pectin acetylesterase activity	1.22E-03
29	GO:0052689: carboxylic ester hydrolase activity	1.41E-03
30	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.63E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.91E-03
32	GO:0016688: L-ascorbate peroxidase activity	1.91E-03
33	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.91E-03
34	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.91E-03
35	GO:0004629: phospholipase C activity	1.91E-03
36	GO:0004130: cytochrome-c peroxidase activity	1.91E-03
37	GO:0016413: O-acetyltransferase activity	2.21E-03
38	GO:0004435: phosphatidylinositol phospholipase C activity	2.30E-03
39	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.30E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.30E-03
41	GO:0016168: chlorophyll binding	2.47E-03
42	GO:0030247: polysaccharide binding	2.75E-03
43	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.75E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.58E-03
45	GO:0003824: catalytic activity	4.93E-03
46	GO:0016788: hydrolase activity, acting on ester bonds	4.94E-03
47	GO:0005215: transporter activity	5.00E-03
48	GO:0004568: chitinase activity	5.05E-03
49	GO:0015293: symporter activity	5.56E-03
50	GO:0008081: phosphoric diester hydrolase activity	6.70E-03
51	GO:0004022: alcohol dehydrogenase (NAD) activity	6.70E-03
52	GO:0004089: carbonate dehydratase activity	6.70E-03
53	GO:0004565: beta-galactosidase activity	6.70E-03
54	GO:0008266: poly(U) RNA binding	7.28E-03
55	GO:0008146: sulfotransferase activity	7.89E-03
56	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.51E-03
57	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.51E-03
58	GO:0031409: pigment binding	8.51E-03
59	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.51E-03
60	GO:0005528: FK506 binding	9.15E-03
61	GO:0016746: transferase activity, transferring acyl groups	9.78E-03
62	GO:0043424: protein histidine kinase binding	9.80E-03
63	GO:0008810: cellulase activity	1.19E-02
64	GO:0022891: substrate-specific transmembrane transporter activity	1.19E-02
65	GO:0016829: lyase activity	1.29E-02
66	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.49E-02
67	GO:0050662: coenzyme binding	1.56E-02
68	GO:0004872: receptor activity	1.64E-02
69	GO:0016791: phosphatase activity	1.98E-02
70	GO:0005200: structural constituent of cytoskeleton	2.06E-02
71	GO:0008375: acetylglucosaminyltransferase activity	2.42E-02
72	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.42E-02
73	GO:0004683: calmodulin-dependent protein kinase activity	2.52E-02
74	GO:0102483: scopolin beta-glucosidase activity	2.52E-02
75	GO:0004672: protein kinase activity	2.69E-02
76	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.90E-02
77	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.00E-02
78	GO:0030246: carbohydrate binding	3.12E-02
79	GO:0003993: acid phosphatase activity	3.31E-02
80	GO:0008422: beta-glucosidase activity	3.41E-02
81	GO:0004364: glutathione transferase activity	3.73E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.28E-02
83	GO:0003690: double-stranded DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	7.09E-10
3	GO:0009579: thylakoid	5.70E-09
4	GO:0009507: chloroplast	1.14E-08
5	GO:0005886: plasma membrane	2.29E-05
6	GO:0009534: chloroplast thylakoid	7.30E-05
7	GO:0048046: apoplast	1.50E-04
8	GO:0008180: COP9 signalosome	2.06E-04
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.06E-04
10	GO:0031969: chloroplast membrane	2.13E-04
11	GO:0009543: chloroplast thylakoid lumen	2.71E-04
12	GO:0009941: chloroplast envelope	3.37E-04
13	GO:0016021: integral component of membrane	4.36E-04
14	GO:0030095: chloroplast photosystem II	4.96E-04
15	GO:0015630: microtubule cytoskeleton	9.23E-04
16	GO:0009523: photosystem II	1.52E-03
17	GO:0010287: plastoglobule	1.72E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.91E-03
19	GO:0010319: stromule	2.09E-03
20	GO:0009986: cell surface	2.70E-03
21	GO:0009533: chloroplast stromal thylakoid	2.70E-03
22	GO:0019005: SCF ubiquitin ligase complex	3.04E-03
23	GO:0046658: anchored component of plasma membrane	3.96E-03
24	GO:0031977: thylakoid lumen	4.56E-03
25	GO:0032040: small-subunit processome	6.13E-03
26	GO:0009570: chloroplast stroma	6.53E-03
27	GO:0000502: proteasome complex	6.66E-03
28	GO:0030076: light-harvesting complex	7.89E-03
29	GO:0005576: extracellular region	8.65E-03
30	GO:0031225: anchored component of membrane	1.03E-02
31	GO:0005770: late endosome	1.49E-02
32	GO:0005887: integral component of plasma membrane	1.54E-02
33	GO:0009522: photosystem I	1.56E-02
34	GO:0005618: cell wall	1.65E-02
35	GO:0032580: Golgi cisterna membrane	1.98E-02
36	GO:0005794: Golgi apparatus	2.92E-02
37	GO:0005743: mitochondrial inner membrane	4.33E-02
38	GO:0005768: endosome	4.53E-02