co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	5.75E-11
3	GO:0010207: photosystem II assembly	9.80E-06
4	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.21E-05
5	GO:0009664: plant-type cell wall organization	3.98E-05
6	GO:0009828: plant-type cell wall loosening	9.86E-05
7	GO:0034337: RNA folding	1.30E-04
8	GO:0006783: heme biosynthetic process	1.31E-04
9	GO:0006782: protoporphyrinogen IX biosynthetic process	1.87E-04
10	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-04
11	GO:0006898: receptor-mediated endocytosis	2.99E-04
12	GO:0035304: regulation of protein dephosphorylation	2.99E-04
13	GO:0010541: acropetal auxin transport	2.99E-04
14	GO:0001736: establishment of planar polarity	2.99E-04
15	GO:0009926: auxin polar transport	3.62E-04
16	GO:0010160: formation of animal organ boundary	4.92E-04
17	GO:0090391: granum assembly	4.92E-04
18	GO:0016045: detection of bacterium	4.92E-04
19	GO:0010359: regulation of anion channel activity	4.92E-04
20	GO:0080055: low-affinity nitrate transport	4.92E-04
21	GO:0045493: xylan catabolic process	4.92E-04
22	GO:0080170: hydrogen peroxide transmembrane transport	7.04E-04
23	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.04E-04
24	GO:0015979: photosynthesis	7.85E-04
25	GO:0042335: cuticle development	8.26E-04
26	GO:0009958: positive gravitropism	8.87E-04
27	GO:0030007: cellular potassium ion homeostasis	9.34E-04
28	GO:0030104: water homeostasis	9.34E-04
29	GO:0048497: maintenance of floral organ identity	1.18E-03
30	GO:0010438: cellular response to sulfur starvation	1.18E-03
31	GO:0010252: auxin homeostasis	1.30E-03
32	GO:0009228: thiamine biosynthetic process	1.45E-03
33	GO:0009913: epidermal cell differentiation	1.45E-03
34	GO:0006655: phosphatidylglycerol biosynthetic process	1.45E-03
35	GO:0060918: auxin transport	1.45E-03
36	GO:0009759: indole glucosinolate biosynthetic process	1.45E-03
37	GO:0042549: photosystem II stabilization	1.45E-03
38	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.45E-03
39	GO:0045490: pectin catabolic process	1.63E-03
40	GO:1901259: chloroplast rRNA processing	1.73E-03
41	GO:0009942: longitudinal axis specification	1.73E-03
42	GO:0010411: xyloglucan metabolic process	1.81E-03
43	GO:0010196: nonphotochemical quenching	2.04E-03
44	GO:0050829: defense response to Gram-negative bacterium	2.04E-03
45	GO:0009772: photosynthetic electron transport in photosystem II	2.04E-03
46	GO:0009735: response to cytokinin	2.39E-03
47	GO:0007389: pattern specification process	2.69E-03
48	GO:0009826: unidimensional cell growth	2.69E-03
49	GO:0010206: photosystem II repair	3.04E-03
50	GO:0034765: regulation of ion transmembrane transport	3.04E-03
51	GO:0009245: lipid A biosynthetic process	3.04E-03
52	GO:0010205: photoinhibition	3.41E-03
53	GO:0009638: phototropism	3.41E-03
54	GO:0048829: root cap development	3.79E-03
55	GO:0006949: syncytium formation	3.79E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	4.18E-03
57	GO:0052544: defense response by callose deposition in cell wall	4.18E-03
58	GO:0019684: photosynthesis, light reaction	4.18E-03
59	GO:1903507: negative regulation of nucleic acid-templated transcription	4.18E-03
60	GO:0048765: root hair cell differentiation	4.18E-03
61	GO:0002213: defense response to insect	4.58E-03
62	GO:0008361: regulation of cell size	4.58E-03
63	GO:0009785: blue light signaling pathway	5.00E-03
64	GO:0009718: anthocyanin-containing compound biosynthetic process	5.00E-03
65	GO:0006094: gluconeogenesis	5.00E-03
66	GO:0010540: basipetal auxin transport	5.44E-03
67	GO:0010143: cutin biosynthetic process	5.44E-03
68	GO:0010030: positive regulation of seed germination	5.88E-03
69	GO:0042545: cell wall modification	6.03E-03
70	GO:0009624: response to nematode	6.22E-03
71	GO:0006636: unsaturated fatty acid biosynthetic process	6.34E-03
72	GO:0000162: tryptophan biosynthetic process	6.34E-03
73	GO:0009944: polarity specification of adaxial/abaxial axis	6.81E-03
74	GO:0051017: actin filament bundle assembly	6.81E-03
75	GO:0007017: microtubule-based process	7.30E-03
76	GO:0016114: terpenoid biosynthetic process	7.79E-03
77	GO:0003333: amino acid transmembrane transport	7.79E-03
78	GO:0016998: cell wall macromolecule catabolic process	7.79E-03
79	GO:0051260: protein homooligomerization	7.79E-03
80	GO:0035428: hexose transmembrane transport	8.30E-03
81	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.30E-03
82	GO:0071369: cellular response to ethylene stimulus	8.82E-03
83	GO:0048443: stamen development	9.35E-03
84	GO:0009734: auxin-activated signaling pathway	9.39E-03
85	GO:0006633: fatty acid biosynthetic process	9.79E-03
86	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.90E-03
87	GO:0080022: primary root development	1.04E-02
88	GO:0034220: ion transmembrane transport	1.04E-02
89	GO:0042631: cellular response to water deprivation	1.04E-02
90	GO:0046323: glucose import	1.10E-02
91	GO:0009741: response to brassinosteroid	1.10E-02
92	GO:0048825: cotyledon development	1.22E-02
93	GO:0007166: cell surface receptor signaling pathway	1.23E-02
94	GO:0009416: response to light stimulus	1.26E-02
95	GO:0000302: response to reactive oxygen species	1.28E-02
96	GO:0010583: response to cyclopentenone	1.34E-02
97	GO:0016032: viral process	1.34E-02
98	GO:0009639: response to red or far red light	1.46E-02
99	GO:0071805: potassium ion transmembrane transport	1.53E-02
100	GO:0051607: defense response to virus	1.59E-02
101	GO:0010027: thylakoid membrane organization	1.66E-02
102	GO:0010029: regulation of seed germination	1.73E-02
103	GO:0009627: systemic acquired resistance	1.79E-02
104	GO:0010311: lateral root formation	2.07E-02
105	GO:0000160: phosphorelay signal transduction system	2.07E-02
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
107	GO:0010218: response to far red light	2.15E-02
108	GO:0009631: cold acclimation	2.22E-02
109	GO:0048527: lateral root development	2.22E-02
110	GO:0010119: regulation of stomatal movement	2.22E-02
111	GO:0006865: amino acid transport	2.29E-02
112	GO:0009637: response to blue light	2.37E-02
113	GO:0034599: cellular response to oxidative stress	2.45E-02
114	GO:0030001: metal ion transport	2.60E-02
115	GO:0009793: embryo development ending in seed dormancy	2.81E-02
116	GO:0009640: photomorphogenesis	2.84E-02
117	GO:0010114: response to red light	2.84E-02
118	GO:0042546: cell wall biogenesis	2.92E-02
119	GO:0032259: methylation	2.93E-02
120	GO:0042742: defense response to bacterium	3.06E-02
121	GO:0006855: drug transmembrane transport	3.17E-02
122	GO:0048364: root development	3.19E-02
123	GO:0031347: regulation of defense response	3.25E-02
124	GO:0006364: rRNA processing	3.51E-02
125	GO:0009736: cytokinin-activated signaling pathway	3.51E-02
126	GO:0009733: response to auxin	3.53E-02
127	GO:0006857: oligopeptide transport	3.68E-02
128	GO:0006096: glycolytic process	3.95E-02
129	GO:0006396: RNA processing	4.60E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0015269: calcium-activated potassium channel activity	0.00E+00
2	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
3	GO:0051749: indole acetic acid carboxyl methyltransferase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0103007: indole-3-acetate carboxyl methyltransferase activity	0.00E+00
8	GO:0010242: oxygen evolving activity	1.30E-04
9	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.30E-04
10	GO:0010329: auxin efflux transmembrane transporter activity	2.89E-04
11	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	2.99E-04
12	GO:0004312: fatty acid synthase activity	2.99E-04
13	GO:0090729: toxin activity	4.92E-04
14	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.92E-04
15	GO:0080054: low-affinity nitrate transmembrane transporter activity	4.92E-04
16	GO:0016851: magnesium chelatase activity	7.04E-04
17	GO:0009044: xylan 1,4-beta-xylosidase activity	9.34E-04
18	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	9.34E-04
19	GO:0046556: alpha-L-arabinofuranosidase activity	9.34E-04
20	GO:0010011: auxin binding	9.34E-04
21	GO:0010328: auxin influx transmembrane transporter activity	9.34E-04
22	GO:0004130: cytochrome-c peroxidase activity	1.45E-03
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.45E-03
24	GO:0031177: phosphopantetheine binding	1.45E-03
25	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.45E-03
26	GO:0015271: outward rectifier potassium channel activity	1.45E-03
27	GO:0004332: fructose-bisphosphate aldolase activity	1.45E-03
28	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.49E-03
29	GO:0000035: acyl binding	1.73E-03
30	GO:0004525: ribonuclease III activity	2.36E-03
31	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.36E-03
32	GO:0005267: potassium channel activity	2.69E-03
33	GO:0005515: protein binding	3.02E-03
34	GO:0009672: auxin:proton symporter activity	3.41E-03
35	GO:0047372: acylglycerol lipase activity	4.18E-03
36	GO:0045330: aspartyl esterase activity	4.84E-03
37	GO:0031072: heat shock protein binding	5.00E-03
38	GO:0008266: poly(U) RNA binding	5.44E-03
39	GO:0030599: pectinesterase activity	5.86E-03
40	GO:0016746: transferase activity, transferring acyl groups	6.40E-03
41	GO:0003714: transcription corepressor activity	6.81E-03
42	GO:0005216: ion channel activity	7.30E-03
43	GO:0030570: pectate lyase activity	8.82E-03
44	GO:0008289: lipid binding	9.24E-03
45	GO:0003756: protein disulfide isomerase activity	9.35E-03
46	GO:0046910: pectinesterase inhibitor activity	1.00E-02
47	GO:0005355: glucose transmembrane transporter activity	1.16E-02
48	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.28E-02
49	GO:0004518: nuclease activity	1.34E-02
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.37E-02
51	GO:0000156: phosphorelay response regulator activity	1.40E-02
52	GO:0051015: actin filament binding	1.40E-02
53	GO:0016791: phosphatase activity	1.46E-02
54	GO:0005200: structural constituent of cytoskeleton	1.53E-02
55	GO:0015250: water channel activity	1.66E-02
56	GO:0016168: chlorophyll binding	1.73E-02
57	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.86E-02
58	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.93E-02
59	GO:0005096: GTPase activator activity	2.07E-02
60	GO:0052689: carboxylic ester hydrolase activity	2.29E-02
61	GO:0003746: translation elongation factor activity	2.37E-02
62	GO:0016787: hydrolase activity	2.51E-02
63	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.52E-02
64	GO:0003723: RNA binding	2.64E-02
65	GO:0015293: symporter activity	3.08E-02
66	GO:0005215: transporter activity	3.47E-02
67	GO:0015171: amino acid transmembrane transporter activity	3.77E-02
68	GO:0003777: microtubule motor activity	3.77E-02
69	GO:0003779: actin binding	4.41E-02
70	GO:0051082: unfolded protein binding	4.51E-02
71	GO:0016301: kinase activity	4.76E-02
72	GO:0003729: mRNA binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	3.58E-14
3	GO:0009534: chloroplast thylakoid	1.61E-12
4	GO:0009535: chloroplast thylakoid membrane	4.44E-10
5	GO:0009543: chloroplast thylakoid lumen	4.20E-07
6	GO:0009570: chloroplast stroma	2.26E-06
7	GO:0009941: chloroplast envelope	2.66E-06
8	GO:0031977: thylakoid lumen	2.16E-05
9	GO:0005618: cell wall	4.43E-05
10	GO:0009515: granal stacked thylakoid	1.30E-04
11	GO:0043674: columella	1.30E-04
12	GO:0009579: thylakoid	1.52E-04
13	GO:0009508: plastid chromosome	2.89E-04
14	GO:0030093: chloroplast photosystem I	2.99E-04
15	GO:0030095: chloroplast photosystem II	3.27E-04
16	GO:0016020: membrane	3.37E-04
17	GO:0010007: magnesium chelatase complex	4.92E-04
18	GO:0031969: chloroplast membrane	6.43E-04
19	GO:0009531: secondary cell wall	7.04E-04
20	GO:0042646: plastid nucleoid	7.04E-04
21	GO:0009522: photosystem I	9.50E-04
22	GO:0009295: nucleoid	1.38E-03
23	GO:0016363: nuclear matrix	1.73E-03
24	GO:0042807: central vacuole	2.04E-03
25	GO:0009986: cell surface	2.04E-03
26	GO:0042644: chloroplast nucleoid	3.04E-03
27	GO:0045298: tubulin complex	3.04E-03
28	GO:0005886: plasma membrane	3.16E-03
29	GO:0055028: cortical microtubule	3.79E-03
30	GO:0032040: small-subunit processome	4.58E-03
31	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
32	GO:0015629: actin cytoskeleton	8.82E-03
33	GO:0009505: plant-type cell wall	1.13E-02
34	GO:0009523: photosystem II	1.22E-02
35	GO:0019898: extrinsic component of membrane	1.22E-02
36	GO:0016021: integral component of membrane	1.37E-02
37	GO:0071944: cell periphery	1.40E-02
38	GO:0030529: intracellular ribonucleoprotein complex	1.66E-02
39	GO:0005874: microtubule	2.00E-02
40	GO:0005768: endosome	2.68E-02
41	GO:0005856: cytoskeleton	3.08E-02
42	GO:0010008: endosome membrane	4.04E-02