co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	2.96E-08
4	GO:0009735: response to cytokinin	2.99E-07
5	GO:0010196: nonphotochemical quenching	4.26E-07
6	GO:0042254: ribosome biogenesis	2.29E-06
7	GO:0090391: granum assembly	2.36E-06
8	GO:0015979: photosynthesis	6.01E-06
9	GO:0006412: translation	9.36E-06
10	GO:0032544: plastid translation	8.31E-05
11	GO:0010027: thylakoid membrane organization	9.24E-05
12	GO:0071588: hydrogen peroxide mediated signaling pathway	1.10E-04
13	GO:0071277: cellular response to calcium ion	1.10E-04
14	GO:0010205: photoinhibition	1.24E-04
15	GO:0016024: CDP-diacylglycerol biosynthetic process	2.01E-04
16	GO:0043255: regulation of carbohydrate biosynthetic process	2.57E-04
17	GO:0010115: regulation of abscisic acid biosynthetic process	2.57E-04
18	GO:0001736: establishment of planar polarity	2.57E-04
19	GO:0006729: tetrahydrobiopterin biosynthetic process	2.57E-04
20	GO:0010024: phytochromobilin biosynthetic process	2.57E-04
21	GO:0010207: photosystem II assembly	2.61E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	3.29E-04
23	GO:0015714: phosphoenolpyruvate transport	4.25E-04
24	GO:0006696: ergosterol biosynthetic process	4.25E-04
25	GO:0006788: heme oxidation	4.25E-04
26	GO:0016998: cell wall macromolecule catabolic process	4.43E-04
27	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.28E-04
28	GO:0009650: UV protection	6.10E-04
29	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	6.10E-04
30	GO:0071484: cellular response to light intensity	6.10E-04
31	GO:0045727: positive regulation of translation	8.10E-04
32	GO:0015713: phosphoglycerate transport	8.10E-04
33	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.78E-04
34	GO:0006461: protein complex assembly	1.02E-03
35	GO:0030308: negative regulation of cell growth	1.02E-03
36	GO:0009828: plant-type cell wall loosening	1.05E-03
37	GO:0045490: pectin catabolic process	1.23E-03
38	GO:0006655: phosphatidylglycerol biosynthetic process	1.25E-03
39	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.25E-03
40	GO:0010337: regulation of salicylic acid metabolic process	1.25E-03
41	GO:0006561: proline biosynthetic process	1.25E-03
42	GO:0017148: negative regulation of translation	1.49E-03
43	GO:0010019: chloroplast-nucleus signaling pathway	1.49E-03
44	GO:1900057: positive regulation of leaf senescence	1.75E-03
45	GO:0010444: guard mother cell differentiation	1.75E-03
46	GO:0006400: tRNA modification	1.75E-03
47	GO:0009395: phospholipid catabolic process	1.75E-03
48	GO:0009772: photosynthetic electron transport in photosystem II	1.75E-03
49	GO:0006605: protein targeting	2.03E-03
50	GO:0009704: de-etiolation	2.03E-03
51	GO:0009657: plastid organization	2.32E-03
52	GO:0010206: photosystem II repair	2.62E-03
53	GO:0090333: regulation of stomatal closure	2.62E-03
54	GO:0006032: chitin catabolic process	3.25E-03
55	GO:0009688: abscisic acid biosynthetic process	3.25E-03
56	GO:0048829: root cap development	3.25E-03
57	GO:0006949: syncytium formation	3.25E-03
58	GO:0009664: plant-type cell wall organization	3.27E-03
59	GO:0009809: lignin biosynthetic process	3.51E-03
60	GO:0009750: response to fructose	3.59E-03
61	GO:0048765: root hair cell differentiation	3.59E-03
62	GO:0006096: glycolytic process	4.14E-03
63	GO:0006006: glucose metabolic process	4.30E-03
64	GO:0009725: response to hormone	4.30E-03
65	GO:0016042: lipid catabolic process	4.41E-03
66	GO:0010143: cutin biosynthetic process	4.66E-03
67	GO:0019253: reductive pentose-phosphate cycle	4.66E-03
68	GO:0010053: root epidermal cell differentiation	5.04E-03
69	GO:0009825: multidimensional cell growth	5.04E-03
70	GO:0010167: response to nitrate	5.04E-03
71	GO:0000027: ribosomal large subunit assembly	5.84E-03
72	GO:0007017: microtubule-based process	6.25E-03
73	GO:0031408: oxylipin biosynthetic process	6.67E-03
74	GO:0003333: amino acid transmembrane transport	6.67E-03
75	GO:0042744: hydrogen peroxide catabolic process	7.09E-03
76	GO:0009411: response to UV	7.55E-03
77	GO:0006633: fatty acid biosynthetic process	7.82E-03
78	GO:0042127: regulation of cell proliferation	8.00E-03
79	GO:0009306: protein secretion	8.00E-03
80	GO:0080022: primary root development	8.93E-03
81	GO:0009958: positive gravitropism	9.41E-03
82	GO:0010182: sugar mediated signaling pathway	9.41E-03
83	GO:0015986: ATP synthesis coupled proton transport	9.91E-03
84	GO:0000302: response to reactive oxygen species	1.09E-02
85	GO:0045893: positive regulation of transcription, DNA-templated	1.13E-02
86	GO:0009826: unidimensional cell growth	1.28E-02
87	GO:0009658: chloroplast organization	1.33E-02
88	GO:0010411: xyloglucan metabolic process	1.59E-02
89	GO:0048573: photoperiodism, flowering	1.59E-02
90	GO:0015995: chlorophyll biosynthetic process	1.59E-02
91	GO:0080167: response to karrikin	1.66E-02
92	GO:0030244: cellulose biosynthetic process	1.71E-02
93	GO:0018298: protein-chromophore linkage	1.71E-02
94	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.71E-02
95	GO:0010311: lateral root formation	1.77E-02
96	GO:0009631: cold acclimation	1.89E-02
97	GO:0006865: amino acid transport	1.96E-02
98	GO:0009637: response to blue light	2.02E-02
99	GO:0034599: cellular response to oxidative stress	2.09E-02
100	GO:0055114: oxidation-reduction process	2.16E-02
101	GO:0006869: lipid transport	2.18E-02
102	GO:0009926: auxin polar transport	2.42E-02
103	GO:0009744: response to sucrose	2.42E-02
104	GO:0009408: response to heat	2.45E-02
105	GO:0042546: cell wall biogenesis	2.49E-02
106	GO:0009644: response to high light intensity	2.56E-02
107	GO:0006364: rRNA processing	2.99E-02
108	GO:0009734: auxin-activated signaling pathway	3.44E-02
109	GO:0048316: seed development	3.45E-02
110	GO:0042545: cell wall modification	3.77E-02
111	GO:0009624: response to nematode	3.85E-02
112	GO:0051726: regulation of cell cycle	4.01E-02
113	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0019843: rRNA binding	2.09E-07
5	GO:0003735: structural constituent of ribosome	9.81E-07
6	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.10E-04
7	GO:0045485: omega-6 fatty acid desaturase activity	1.10E-04
8	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.10E-04
9	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.57E-04
10	GO:0016788: hydrolase activity, acting on ester bonds	3.35E-04
11	GO:0005528: FK506 binding	3.65E-04
12	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.25E-04
13	GO:0030570: pectate lyase activity	5.28E-04
14	GO:0043023: ribosomal large subunit binding	6.10E-04
15	GO:0016851: magnesium chelatase activity	6.10E-04
16	GO:0004392: heme oxygenase (decyclizing) activity	8.10E-04
17	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	8.10E-04
18	GO:0015120: phosphoglycerate transmembrane transporter activity	8.10E-04
19	GO:0010011: auxin binding	8.10E-04
20	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	8.10E-04
21	GO:0010328: auxin influx transmembrane transporter activity	8.10E-04
22	GO:0016688: L-ascorbate peroxidase activity	1.25E-03
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.25E-03
24	GO:0004130: cytochrome-c peroxidase activity	1.25E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.25E-03
26	GO:0052747: sinapyl alcohol dehydrogenase activity	2.03E-03
27	GO:0030674: protein binding, bridging	2.03E-03
28	GO:0016491: oxidoreductase activity	2.16E-03
29	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.32E-03
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.04E-03
31	GO:0052689: carboxylic ester hydrolase activity	3.17E-03
32	GO:0004568: chitinase activity	3.25E-03
33	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.93E-03
34	GO:0004022: alcohol dehydrogenase (NAD) activity	4.30E-03
35	GO:0008131: primary amine oxidase activity	4.66E-03
36	GO:0008266: poly(U) RNA binding	4.66E-03
37	GO:0008146: sulfotransferase activity	5.04E-03
38	GO:0016746: transferase activity, transferring acyl groups	5.13E-03
39	GO:0016829: lyase activity	6.74E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	7.55E-03
41	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.41E-03
42	GO:0050662: coenzyme binding	9.91E-03
43	GO:0004872: receptor activity	1.04E-02
44	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.09E-02
45	GO:0016791: phosphatase activity	1.25E-02
46	GO:0005200: structural constituent of cytoskeleton	1.30E-02
47	GO:0016168: chlorophyll binding	1.47E-02
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.59E-02
49	GO:0030247: polysaccharide binding	1.59E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.71E-02
51	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.83E-02
52	GO:0003993: acid phosphatase activity	2.09E-02
53	GO:0050661: NADP binding	2.22E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	2.22E-02
55	GO:0015293: symporter activity	2.63E-02
56	GO:0051287: NAD binding	2.77E-02
57	GO:0003690: double-stranded DNA binding	3.07E-02
58	GO:0015171: amino acid transmembrane transporter activity	3.22E-02
59	GO:0045330: aspartyl esterase activity	3.22E-02
60	GO:0008289: lipid binding	3.40E-02
61	GO:0030599: pectinesterase activity	3.69E-02
62	GO:0003779: actin binding	3.77E-02
63	GO:0003729: mRNA binding	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	1.05E-21
5	GO:0009579: thylakoid	4.96E-16
6	GO:0009535: chloroplast thylakoid membrane	2.60E-14
7	GO:0009534: chloroplast thylakoid	3.74E-13
8	GO:0009941: chloroplast envelope	8.45E-12
9	GO:0009570: chloroplast stroma	1.05E-09
10	GO:0005840: ribosome	3.57E-09
11	GO:0009543: chloroplast thylakoid lumen	5.36E-06
12	GO:0030095: chloroplast photosystem II	6.71E-06
13	GO:0009523: photosystem II	4.73E-05
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.03E-04
15	GO:0030093: chloroplast photosystem I	2.57E-04
16	GO:0048046: apoplast	3.25E-04
17	GO:0005618: cell wall	4.04E-04
18	GO:0010007: magnesium chelatase complex	4.25E-04
19	GO:0015935: small ribosomal subunit	4.43E-04
20	GO:0015630: microtubule cytoskeleton	6.10E-04
21	GO:0009295: nucleoid	1.12E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.25E-03
23	GO:0009986: cell surface	1.75E-03
24	GO:0009533: chloroplast stromal thylakoid	1.75E-03
25	GO:0031977: thylakoid lumen	2.41E-03
26	GO:0008180: COP9 signalosome	2.62E-03
27	GO:0031969: chloroplast membrane	2.79E-03
28	GO:0016020: membrane	4.00E-03
29	GO:0016021: integral component of membrane	4.14E-03
30	GO:0009508: plastid chromosome	4.30E-03
31	GO:0010287: plastoglobule	5.90E-03
32	GO:0005576: extracellular region	7.09E-03
33	GO:0009505: plant-type cell wall	8.01E-03
34	GO:0046658: anchored component of plasma membrane	1.14E-02
35	GO:0010319: stromule	1.30E-02
36	GO:0031225: anchored component of membrane	1.67E-02
37	GO:0019005: SCF ubiquitin ligase complex	1.71E-02
38	GO:0000502: proteasome complex	2.99E-02
39	GO:0009706: chloroplast inner membrane	3.85E-02