Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G19985

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0006412: translation1.59E-13
14GO:0015979: photosynthesis2.62E-13
15GO:0032544: plastid translation5.03E-13
16GO:0042254: ribosome biogenesis1.54E-09
17GO:0015995: chlorophyll biosynthetic process3.06E-09
18GO:0009658: chloroplast organization1.87E-08
19GO:0010027: thylakoid membrane organization4.57E-08
20GO:0009735: response to cytokinin5.83E-07
21GO:0009773: photosynthetic electron transport in photosystem I4.32E-06
22GO:0010196: nonphotochemical quenching2.03E-05
23GO:0090391: granum assembly3.92E-05
24GO:0006779: porphyrin-containing compound biosynthetic process7.51E-05
25GO:0006782: protoporphyrinogen IX biosynthetic process9.61E-05
26GO:0010236: plastoquinone biosynthetic process2.22E-04
27GO:0006457: protein folding3.65E-04
28GO:0042372: phylloquinone biosynthetic process4.19E-04
29GO:0071588: hydrogen peroxide mediated signaling pathway5.15E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.15E-04
31GO:0060627: regulation of vesicle-mediated transport5.15E-04
32GO:0043489: RNA stabilization5.15E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process5.15E-04
34GO:1904964: positive regulation of phytol biosynthetic process5.15E-04
35GO:0042759: long-chain fatty acid biosynthetic process5.15E-04
36GO:0009772: photosynthetic electron transport in photosystem II5.37E-04
37GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.49E-04
38GO:0048564: photosystem I assembly6.69E-04
39GO:0006353: DNA-templated transcription, termination6.69E-04
40GO:0000413: protein peptidyl-prolyl isomerization7.48E-04
41GO:0006568: tryptophan metabolic process1.11E-03
42GO:0010024: phytochromobilin biosynthetic process1.11E-03
43GO:0010270: photosystem II oxygen evolving complex assembly1.11E-03
44GO:1902326: positive regulation of chlorophyll biosynthetic process1.11E-03
45GO:0034755: iron ion transmembrane transport1.11E-03
46GO:0001736: establishment of planar polarity1.11E-03
47GO:0009451: RNA modification1.20E-03
48GO:0006949: syncytium formation1.34E-03
49GO:0045036: protein targeting to chloroplast1.34E-03
50GO:0009828: plant-type cell wall loosening1.37E-03
51GO:0006869: lipid transport1.64E-03
52GO:0016024: CDP-diacylglycerol biosynthetic process1.77E-03
53GO:0006954: inflammatory response1.81E-03
54GO:0006518: peptide metabolic process1.81E-03
55GO:0015675: nickel cation transport1.81E-03
56GO:0006788: heme oxidation1.81E-03
57GO:0006013: mannose metabolic process1.81E-03
58GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.81E-03
59GO:0010207: photosystem II assembly2.27E-03
60GO:0010143: cutin biosynthetic process2.27E-03
61GO:0051085: chaperone mediated protein folding requiring cofactor2.63E-03
62GO:0009152: purine ribonucleotide biosynthetic process2.63E-03
63GO:0046653: tetrahydrofolate metabolic process2.63E-03
64GO:0010239: chloroplast mRNA processing2.63E-03
65GO:0009650: UV protection2.63E-03
66GO:0006241: CTP biosynthetic process2.63E-03
67GO:0019048: modulation by virus of host morphology or physiology2.63E-03
68GO:0006424: glutamyl-tRNA aminoacylation2.63E-03
69GO:0046739: transport of virus in multicellular host2.63E-03
70GO:1901332: negative regulation of lateral root development2.63E-03
71GO:0006165: nucleoside diphosphate phosphorylation2.63E-03
72GO:0006228: UTP biosynthetic process2.63E-03
73GO:0031048: chromatin silencing by small RNA2.63E-03
74GO:0010088: phloem development2.63E-03
75GO:0006986: response to unfolded protein2.63E-03
76GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.63E-03
77GO:2001141: regulation of RNA biosynthetic process2.63E-03
78GO:0006183: GTP biosynthetic process3.54E-03
79GO:0045727: positive regulation of translation3.54E-03
80GO:0015994: chlorophyll metabolic process3.54E-03
81GO:0042991: transcription factor import into nucleus3.54E-03
82GO:0051567: histone H3-K9 methylation3.54E-03
83GO:0009956: radial pattern formation3.54E-03
84GO:0010114: response to red light4.51E-03
85GO:0032543: mitochondrial translation4.54E-03
86GO:0048359: mucilage metabolic process involved in seed coat development4.54E-03
87GO:0006564: L-serine biosynthetic process4.54E-03
88GO:0045038: protein import into chloroplast thylakoid membrane4.54E-03
89GO:0031365: N-terminal protein amino acid modification4.54E-03
90GO:0009411: response to UV4.58E-03
91GO:0009306: protein secretion4.99E-03
92GO:0045454: cell redox homeostasis5.01E-03
93GO:0042549: photosystem II stabilization5.63E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.63E-03
95GO:0000470: maturation of LSU-rRNA5.63E-03
96GO:0006655: phosphatidylglycerol biosynthetic process5.63E-03
97GO:0010190: cytochrome b6f complex assembly5.63E-03
98GO:0006828: manganese ion transport5.63E-03
99GO:0032973: amino acid export5.63E-03
100GO:0016458: gene silencing5.63E-03
101GO:0042335: cuticle development5.85E-03
102GO:0009664: plant-type cell wall organization6.03E-03
103GO:0010555: response to mannitol6.79E-03
104GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.79E-03
105GO:0017148: negative regulation of translation6.79E-03
106GO:0006694: steroid biosynthetic process6.79E-03
107GO:1901259: chloroplast rRNA processing6.79E-03
108GO:0010189: vitamin E biosynthetic process6.79E-03
109GO:0010019: chloroplast-nucleus signaling pathway6.79E-03
110GO:0016042: lipid catabolic process6.89E-03
111GO:0009395: phospholipid catabolic process8.04E-03
112GO:0043090: amino acid import8.04E-03
113GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.04E-03
114GO:0006400: tRNA modification8.04E-03
115GO:0009826: unidimensional cell growth9.20E-03
116GO:0045292: mRNA cis splicing, via spliceosome9.36E-03
117GO:0030091: protein repair9.36E-03
118GO:0009642: response to light intensity9.36E-03
119GO:0006605: protein targeting9.36E-03
120GO:0042255: ribosome assembly9.36E-03
121GO:0042742: defense response to bacterium9.42E-03
122GO:0009808: lignin metabolic process1.08E-02
123GO:0071482: cellular response to light stimulus1.08E-02
124GO:0010497: plasmodesmata-mediated intercellular transport1.08E-02
125GO:0009657: plastid organization1.08E-02
126GO:0015780: nucleotide-sugar transport1.22E-02
127GO:0010206: photosystem II repair1.22E-02
128GO:0080144: amino acid homeostasis1.22E-02
129GO:0006783: heme biosynthetic process1.22E-02
130GO:0000373: Group II intron splicing1.22E-02
131GO:0010205: photoinhibition1.38E-02
132GO:0009817: defense response to fungus, incompatible interaction1.48E-02
133GO:0018298: protein-chromophore linkage1.48E-02
134GO:0030422: production of siRNA involved in RNA interference1.54E-02
135GO:0048829: root cap development1.54E-02
136GO:0010311: lateral root formation1.56E-02
137GO:0009790: embryo development1.68E-02
138GO:0010015: root morphogenesis1.70E-02
139GO:0006816: calcium ion transport1.70E-02
140GO:0009073: aromatic amino acid family biosynthetic process1.70E-02
141GO:0043085: positive regulation of catalytic activity1.70E-02
142GO:0006879: cellular iron ion homeostasis1.70E-02
143GO:0006352: DNA-templated transcription, initiation1.70E-02
144GO:0006415: translational termination1.70E-02
145GO:0048765: root hair cell differentiation1.70E-02
146GO:0007568: aging1.72E-02
147GO:0009631: cold acclimation1.72E-02
148GO:0009637: response to blue light1.88E-02
149GO:0034599: cellular response to oxidative stress1.97E-02
150GO:2000012: regulation of auxin polar transport2.05E-02
151GO:0010628: positive regulation of gene expression2.05E-02
152GO:0006006: glucose metabolic process2.05E-02
153GO:0045490: pectin catabolic process2.08E-02
154GO:0030001: metal ion transport2.15E-02
155GO:0009933: meristem structural organization2.24E-02
156GO:0019253: reductive pentose-phosphate cycle2.24E-02
157GO:0010025: wax biosynthetic process2.62E-02
158GO:0006636: unsaturated fatty acid biosynthetic process2.62E-02
159GO:0019344: cysteine biosynthetic process2.83E-02
160GO:0000027: ribosomal large subunit assembly2.83E-02
161GO:0051017: actin filament bundle assembly2.83E-02
162GO:0007010: cytoskeleton organization2.83E-02
163GO:0006418: tRNA aminoacylation for protein translation3.03E-02
164GO:0009768: photosynthesis, light harvesting in photosystem I3.03E-02
165GO:0061077: chaperone-mediated protein folding3.24E-02
166GO:0006306: DNA methylation3.24E-02
167GO:0003333: amino acid transmembrane transport3.24E-02
168GO:0006364: rRNA processing3.28E-02
169GO:0006813: potassium ion transport3.28E-02
170GO:0030245: cellulose catabolic process3.46E-02
171GO:0016226: iron-sulfur cluster assembly3.46E-02
172GO:0019722: calcium-mediated signaling3.90E-02
173GO:0009409: response to cold4.36E-02
174GO:0080022: primary root development4.37E-02
175GO:0008033: tRNA processing4.37E-02
176GO:0006342: chromatin silencing4.61E-02
177GO:0009958: positive gravitropism4.61E-02
178GO:0006662: glycerol ether metabolic process4.61E-02
179GO:0010305: leaf vascular tissue pattern formation4.61E-02
180GO:0009624: response to nematode4.65E-02
181GO:0015986: ATP synthesis coupled proton transport4.85E-02
182GO:0007018: microtubule-based movement4.85E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0047661: amino-acid racemase activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0019843: rRNA binding6.16E-25
16GO:0003735: structural constituent of ribosome6.77E-16
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.42E-10
18GO:0016851: magnesium chelatase activity6.33E-07
19GO:0005528: FK506 binding7.08E-07
20GO:0051920: peroxiredoxin activity1.29E-05
21GO:0016788: hydrolase activity, acting on ester bonds2.19E-05
22GO:0016209: antioxidant activity3.00E-05
23GO:0043023: ribosomal large subunit binding8.39E-05
24GO:0008266: poly(U) RNA binding2.13E-04
25GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.14E-04
26GO:0051087: chaperone binding3.84E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity5.15E-04
28GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.15E-04
29GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.15E-04
30GO:0004425: indole-3-glycerol-phosphate synthase activity5.15E-04
31GO:0004655: porphobilinogen synthase activity5.15E-04
32GO:0005080: protein kinase C binding5.15E-04
33GO:0045485: omega-6 fatty acid desaturase activity5.15E-04
34GO:0030570: pectate lyase activity5.49E-04
35GO:0004617: phosphoglycerate dehydrogenase activity1.11E-03
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.11E-03
37GO:0016630: protochlorophyllide reductase activity1.11E-03
38GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.11E-03
39GO:0000774: adenyl-nucleotide exchange factor activity1.11E-03
40GO:0015099: nickel cation transmembrane transporter activity1.11E-03
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.11E-03
42GO:0047746: chlorophyllase activity1.11E-03
43GO:0052689: carboxylic ester hydrolase activity1.16E-03
44GO:0003723: RNA binding1.47E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.81E-03
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.81E-03
47GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.81E-03
48GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.81E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.81E-03
50GO:0002161: aminoacyl-tRNA editing activity1.81E-03
51GO:0030267: glyoxylate reductase (NADP) activity1.81E-03
52GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.81E-03
53GO:0051082: unfolded protein binding2.17E-03
54GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.40E-03
55GO:0004601: peroxidase activity2.50E-03
56GO:0008097: 5S rRNA binding2.63E-03
57GO:0001872: (1->3)-beta-D-glucan binding2.63E-03
58GO:0016149: translation release factor activity, codon specific2.63E-03
59GO:0035197: siRNA binding2.63E-03
60GO:0004550: nucleoside diphosphate kinase activity2.63E-03
61GO:0001053: plastid sigma factor activity3.54E-03
62GO:0010011: auxin binding3.54E-03
63GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.54E-03
64GO:0016987: sigma factor activity3.54E-03
65GO:0010328: auxin influx transmembrane transporter activity3.54E-03
66GO:0004392: heme oxygenase (decyclizing) activity3.54E-03
67GO:0043495: protein anchor3.54E-03
68GO:0004659: prenyltransferase activity3.54E-03
69GO:0008289: lipid binding3.98E-03
70GO:0003959: NADPH dehydrogenase activity4.54E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor4.54E-03
72GO:0004040: amidase activity4.54E-03
73GO:0016208: AMP binding5.63E-03
74GO:0004130: cytochrome-c peroxidase activity5.63E-03
75GO:0016688: L-ascorbate peroxidase activity5.63E-03
76GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.63E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.79E-03
78GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.79E-03
79GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.79E-03
80GO:0004559: alpha-mannosidase activity6.79E-03
81GO:0005509: calcium ion binding7.92E-03
82GO:0016831: carboxy-lyase activity8.04E-03
83GO:0008235: metalloexopeptidase activity8.04E-03
84GO:0019899: enzyme binding8.04E-03
85GO:0046872: metal ion binding8.61E-03
86GO:0003729: mRNA binding8.67E-03
87GO:0008312: 7S RNA binding9.36E-03
88GO:0052747: sinapyl alcohol dehydrogenase activity9.36E-03
89GO:0004033: aldo-keto reductase (NADP) activity9.36E-03
90GO:0016168: chlorophyll binding1.20E-02
91GO:0003747: translation release factor activity1.22E-02
92GO:0005381: iron ion transmembrane transporter activity1.38E-02
93GO:0005384: manganese ion transmembrane transporter activity1.38E-02
94GO:0047617: acyl-CoA hydrolase activity1.38E-02
95GO:0016829: lyase activity1.53E-02
96GO:0008047: enzyme activator activity1.54E-02
97GO:0004222: metalloendopeptidase activity1.64E-02
98GO:0016491: oxidoreductase activity1.69E-02
99GO:0004177: aminopeptidase activity1.70E-02
100GO:0004521: endoribonuclease activity1.88E-02
101GO:0000049: tRNA binding1.88E-02
102GO:0045551: cinnamyl-alcohol dehydrogenase activity1.88E-02
103GO:0042803: protein homodimerization activity1.90E-02
104GO:0003993: acid phosphatase activity1.97E-02
105GO:0015095: magnesium ion transmembrane transporter activity2.05E-02
106GO:0031072: heat shock protein binding2.05E-02
107GO:0004565: beta-galactosidase activity2.05E-02
108GO:0008081: phosphoric diester hydrolase activity2.05E-02
109GO:0008017: microtubule binding2.21E-02
110GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.24E-02
111GO:0003924: GTPase activity2.42E-02
112GO:0031409: pigment binding2.62E-02
113GO:0051537: 2 iron, 2 sulfur cluster binding2.63E-02
114GO:0043621: protein self-association2.63E-02
115GO:0004519: endonuclease activity2.74E-02
116GO:0042802: identical protein binding2.81E-02
117GO:0051536: iron-sulfur cluster binding2.83E-02
118GO:0051287: NAD binding2.95E-02
119GO:0015079: potassium ion transmembrane transporter activity3.03E-02
120GO:0008324: cation transmembrane transporter activity3.03E-02
121GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.12E-02
122GO:0008168: methyltransferase activity3.43E-02
123GO:0005507: copper ion binding3.53E-02
124GO:0003777: microtubule motor activity3.63E-02
125GO:0015171: amino acid transmembrane transporter activity3.63E-02
126GO:0022891: substrate-specific transmembrane transporter activity3.68E-02
127GO:0008810: cellulase activity3.68E-02
128GO:0008514: organic anion transmembrane transporter activity3.90E-02
129GO:0003727: single-stranded RNA binding3.90E-02
130GO:0004812: aminoacyl-tRNA ligase activity4.13E-02
131GO:0047134: protein-disulfide reductase activity4.13E-02
132GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.61E-02
133GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.61E-02
134GO:0004791: thioredoxin-disulfide reductase activity4.85E-02
135GO:0050662: coenzyme binding4.85E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast4.30E-77
5GO:0009570: chloroplast stroma7.81E-55
6GO:0009941: chloroplast envelope3.75E-43
7GO:0009579: thylakoid6.46E-29
8GO:0009535: chloroplast thylakoid membrane6.37E-28
9GO:0009543: chloroplast thylakoid lumen9.84E-22
10GO:0009534: chloroplast thylakoid1.49E-17
11GO:0031977: thylakoid lumen2.31E-17
12GO:0005840: ribosome4.43E-17
13GO:0009654: photosystem II oxygen evolving complex2.28E-08
14GO:0010007: magnesium chelatase complex1.33E-07
15GO:0019898: extrinsic component of membrane2.79E-07
16GO:0046658: anchored component of plasma membrane1.25E-06
17GO:0048046: apoplast5.91E-05
18GO:0000311: plastid large ribosomal subunit1.48E-04
19GO:0030095: chloroplast photosystem II2.13E-04
20GO:0031969: chloroplast membrane2.30E-04
21GO:0016020: membrane3.58E-04
22GO:0009706: chloroplast inner membrane4.36E-04
23GO:0009547: plastid ribosome5.15E-04
24GO:0009533: chloroplast stromal thylakoid5.37E-04
25GO:0031225: anchored component of membrane6.06E-04
26GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.74E-04
27GO:0080085: signal recognition particle, chloroplast targeting1.11E-03
28GO:0010319: stromule1.47E-03
29GO:0005618: cell wall1.52E-03
30GO:0009536: plastid2.02E-03
31GO:0000312: plastid small ribosomal subunit2.27E-03
32GO:0005719: nuclear euchromatin2.63E-03
33GO:0010287: plastoglobule2.82E-03
34GO:0042651: thylakoid membrane3.49E-03
35GO:0015935: small ribosomal subunit3.83E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.63E-03
37GO:0000793: condensed chromosome5.63E-03
38GO:0009505: plant-type cell wall5.80E-03
39GO:0009523: photosystem II7.28E-03
40GO:0009986: cell surface8.04E-03
41GO:0000794: condensed nuclear chromosome8.04E-03
42GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.08E-02
43GO:0030529: intracellular ribonucleoprotein complex1.13E-02
44GO:0015030: Cajal body1.38E-02
45GO:0022625: cytosolic large ribosomal subunit1.46E-02
46GO:0090404: pollen tube tip1.70E-02
47GO:0015934: large ribosomal subunit1.72E-02
48GO:0005759: mitochondrial matrix1.85E-02
49GO:0030076: light-harvesting complex2.43E-02
50GO:0009532: plastid stroma3.24E-02
51GO:0015629: actin cytoskeleton3.68E-02
52GO:0005871: kinesin complex4.13E-02
53GO:0005874: microtubule4.49E-02
54GO:0009522: photosystem I4.85E-02
Gene type



Gene DE type