co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G19830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:0006066: alcohol metabolic process	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	5.59E-09
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.57E-05
10	GO:0080170: hydrogen peroxide transmembrane transport	2.63E-05
11	GO:0009416: response to light stimulus	3.82E-05
12	GO:0016042: lipid catabolic process	4.20E-05
13	GO:0015979: photosynthesis	1.56E-04
14	GO:0010196: nonphotochemical quenching	1.99E-04
15	GO:0034220: ion transmembrane transport	2.07E-04
16	GO:1902025: nitrate import	2.65E-04
17	GO:0000481: maturation of 5S rRNA	2.65E-04
18	GO:0006106: fumarate metabolic process	2.65E-04
19	GO:0090548: response to nitrate starvation	2.65E-04
20	GO:0034337: RNA folding	2.65E-04
21	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.65E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	2.65E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.65E-04
24	GO:0010205: photoinhibition	4.44E-04
25	GO:0010027: thylakoid membrane organization	4.98E-04
26	GO:0043255: regulation of carbohydrate biosynthetic process	5.83E-04
27	GO:0010115: regulation of abscisic acid biosynthetic process	5.83E-04
28	GO:1900033: negative regulation of trichome patterning	5.83E-04
29	GO:0001736: establishment of planar polarity	5.83E-04
30	GO:0010024: phytochromobilin biosynthetic process	5.83E-04
31	GO:0009735: response to cytokinin	7.53E-04
32	GO:0010229: inflorescence development	7.76E-04
33	GO:0010143: cutin biosynthetic process	8.73E-04
34	GO:0090391: granum assembly	9.47E-04
35	GO:0006788: heme oxidation	9.47E-04
36	GO:0006518: peptide metabolic process	9.47E-04
37	GO:0031022: nuclear migration along microfilament	9.47E-04
38	GO:0015714: phosphoenolpyruvate transport	9.47E-04
39	GO:0010167: response to nitrate	9.75E-04
40	GO:0006636: unsaturated fatty acid biosynthetic process	1.08E-03
41	GO:0006833: water transport	1.08E-03
42	GO:0007623: circadian rhythm	1.11E-03
43	GO:0009650: UV protection	1.35E-03
44	GO:1901332: negative regulation of lateral root development	1.35E-03
45	GO:0006168: adenine salvage	1.35E-03
46	GO:0010371: regulation of gibberellin biosynthetic process	1.35E-03
47	GO:0006166: purine ribonucleoside salvage	1.35E-03
48	GO:0051639: actin filament network formation	1.35E-03
49	GO:0009800: cinnamic acid biosynthetic process	1.35E-03
50	GO:0016998: cell wall macromolecule catabolic process	1.44E-03
51	GO:0030104: water homeostasis	1.81E-03
52	GO:0015713: phosphoglycerate transport	1.81E-03
53	GO:0048629: trichome patterning	1.81E-03
54	GO:0010109: regulation of photosynthesis	1.81E-03
55	GO:0051764: actin crosslink formation	1.81E-03
56	GO:0045727: positive regulation of translation	1.81E-03
57	GO:0015994: chlorophyll metabolic process	1.81E-03
58	GO:0009306: protein secretion	1.87E-03
59	GO:0042335: cuticle development	2.19E-03
60	GO:0006564: L-serine biosynthetic process	2.31E-03
61	GO:0009904: chloroplast accumulation movement	2.31E-03
62	GO:0016123: xanthophyll biosynthetic process	2.31E-03
63	GO:0044209: AMP salvage	2.31E-03
64	GO:0010305: leaf vascular tissue pattern formation	2.36E-03
65	GO:0006810: transport	2.48E-03
66	GO:0006559: L-phenylalanine catabolic process	2.85E-03
67	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.85E-03
68	GO:0010337: regulation of salicylic acid metabolic process	2.85E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.85E-03
70	GO:0035435: phosphate ion transmembrane transport	2.85E-03
71	GO:0006561: proline biosynthetic process	2.85E-03
72	GO:0010405: arabinogalactan protein metabolic process	2.85E-03
73	GO:0006751: glutathione catabolic process	2.85E-03
74	GO:0048827: phyllome development	2.85E-03
75	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.85E-03
76	GO:0009913: epidermal cell differentiation	2.85E-03
77	GO:0009903: chloroplast avoidance movement	3.43E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	3.43E-03
79	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.43E-03
80	GO:1900057: positive regulation of leaf senescence	4.04E-03
81	GO:0010444: guard mother cell differentiation	4.04E-03
82	GO:0009395: phospholipid catabolic process	4.04E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	4.04E-03
84	GO:1900056: negative regulation of leaf senescence	4.04E-03
85	GO:0042128: nitrate assimilation	4.68E-03
86	GO:0008610: lipid biosynthetic process	4.69E-03
87	GO:0030091: protein repair	4.69E-03
88	GO:0006605: protein targeting	4.69E-03
89	GO:0032508: DNA duplex unwinding	4.69E-03
90	GO:0031540: regulation of anthocyanin biosynthetic process	4.69E-03
91	GO:0055075: potassium ion homeostasis	4.69E-03
92	GO:0016559: peroxisome fission	4.69E-03
93	GO:0015995: chlorophyll biosynthetic process	4.93E-03
94	GO:0006633: fatty acid biosynthetic process	5.22E-03
95	GO:0032544: plastid translation	5.37E-03
96	GO:0010311: lateral root formation	5.74E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.09E-03
98	GO:0034765: regulation of ion transmembrane transport	6.09E-03
99	GO:0009631: cold acclimation	6.32E-03
100	GO:0009638: phototropism	6.83E-03
101	GO:0006032: chitin catabolic process	7.61E-03
102	GO:0009688: abscisic acid biosynthetic process	7.61E-03
103	GO:0048829: root cap development	7.61E-03
104	GO:0008285: negative regulation of cell proliferation	8.42E-03
105	GO:0009750: response to fructose	8.42E-03
106	GO:0048765: root hair cell differentiation	8.42E-03
107	GO:0046856: phosphatidylinositol dephosphorylation	8.42E-03
108	GO:0000038: very long-chain fatty acid metabolic process	8.42E-03
109	GO:0015706: nitrate transport	9.26E-03
110	GO:0016024: CDP-diacylglycerol biosynthetic process	9.26E-03
111	GO:0010588: cotyledon vascular tissue pattern formation	1.01E-02
112	GO:0010102: lateral root morphogenesis	1.01E-02
113	GO:0009785: blue light signaling pathway	1.01E-02
114	GO:0010628: positive regulation of gene expression	1.01E-02
115	GO:0006108: malate metabolic process	1.01E-02
116	GO:0006006: glucose metabolic process	1.01E-02
117	GO:0009718: anthocyanin-containing compound biosynthetic process	1.01E-02
118	GO:0009725: response to hormone	1.01E-02
119	GO:0010020: chloroplast fission	1.10E-02
120	GO:0019253: reductive pentose-phosphate cycle	1.10E-02
121	GO:0010540: basipetal auxin transport	1.10E-02
122	GO:0048467: gynoecium development	1.10E-02
123	GO:0071555: cell wall organization	1.18E-02
124	GO:0009825: multidimensional cell growth	1.20E-02
125	GO:0071732: cellular response to nitric oxide	1.20E-02
126	GO:0010030: positive regulation of seed germination	1.20E-02
127	GO:0010053: root epidermal cell differentiation	1.20E-02
128	GO:0010025: wax biosynthetic process	1.29E-02
129	GO:0006857: oligopeptide transport	1.29E-02
130	GO:0042023: DNA endoreduplication	1.29E-02
131	GO:0080147: root hair cell development	1.39E-02
132	GO:0051017: actin filament bundle assembly	1.39E-02
133	GO:2000377: regulation of reactive oxygen species metabolic process	1.39E-02
134	GO:0006487: protein N-linked glycosylation	1.39E-02
135	GO:0006096: glycolytic process	1.43E-02
136	GO:0009651: response to salt stress	1.47E-02
137	GO:0007017: microtubule-based process	1.49E-02
138	GO:0010073: meristem maintenance	1.49E-02
139	GO:0019953: sexual reproduction	1.49E-02
140	GO:0008299: isoprenoid biosynthetic process	1.49E-02
141	GO:0007165: signal transduction	1.51E-02
142	GO:0009737: response to abscisic acid	1.58E-02
143	GO:0031408: oxylipin biosynthetic process	1.59E-02
144	GO:0003333: amino acid transmembrane transport	1.59E-02
145	GO:0006468: protein phosphorylation	1.66E-02
146	GO:0016226: iron-sulfur cluster assembly	1.70E-02
147	GO:0030245: cellulose catabolic process	1.70E-02
148	GO:0010017: red or far-red light signaling pathway	1.70E-02
149	GO:0009624: response to nematode	1.72E-02
150	GO:0009411: response to UV	1.81E-02
151	GO:0071369: cellular response to ethylene stimulus	1.81E-02
152	GO:0010227: floral organ abscission	1.81E-02
153	GO:0051726: regulation of cell cycle	1.83E-02
154	GO:0055085: transmembrane transport	1.84E-02
155	GO:0006869: lipid transport	1.91E-02
156	GO:0042127: regulation of cell proliferation	1.92E-02
157	GO:0009409: response to cold	1.99E-02
158	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.03E-02
159	GO:0042391: regulation of membrane potential	2.15E-02
160	GO:0080022: primary root development	2.15E-02
161	GO:0010087: phloem or xylem histogenesis	2.15E-02
162	GO:0042631: cellular response to water deprivation	2.15E-02
163	GO:0009408: response to heat	2.21E-02
164	GO:0071472: cellular response to salt stress	2.26E-02
165	GO:0010182: sugar mediated signaling pathway	2.26E-02
166	GO:0009958: positive gravitropism	2.26E-02
167	GO:0015986: ATP synthesis coupled proton transport	2.38E-02
168	GO:0007018: microtubule-based movement	2.38E-02
169	GO:0042752: regulation of circadian rhythm	2.38E-02
170	GO:0042744: hydrogen peroxide catabolic process	2.46E-02
171	GO:0048825: cotyledon development	2.51E-02
172	GO:0002229: defense response to oomycetes	2.63E-02
173	GO:0000302: response to reactive oxygen species	2.63E-02
174	GO:0016032: viral process	2.76E-02
175	GO:0071281: cellular response to iron ion	2.88E-02
176	GO:0045490: pectin catabolic process	2.98E-02
177	GO:0010252: auxin homeostasis	3.02E-02
178	GO:0016567: protein ubiquitination	3.08E-02
179	GO:0071805: potassium ion transmembrane transport	3.15E-02
180	GO:0009734: auxin-activated signaling pathway	3.38E-02
181	GO:0009911: positive regulation of flower development	3.42E-02
182	GO:0009414: response to water deprivation	3.54E-02
183	GO:0009627: systemic acquired resistance	3.70E-02
184	GO:0006979: response to oxidative stress	3.70E-02
185	GO:0055114: oxidation-reduction process	3.73E-02
186	GO:0010411: xyloglucan metabolic process	3.84E-02
187	GO:0030244: cellulose biosynthetic process	4.13E-02
188	GO:0018298: protein-chromophore linkage	4.13E-02
189	GO:0000160: phosphorelay signal transduction system	4.28E-02
190	GO:0009733: response to auxin	4.32E-02
191	GO:0007568: aging	4.58E-02
192	GO:0006865: amino acid transport	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
5	GO:0052689: carboxylic ester hydrolase activity	1.84E-06
6	GO:0016788: hydrolase activity, acting on ester bonds	7.57E-06
7	GO:0001872: (1->3)-beta-D-glucan binding	2.63E-05
8	GO:0004871: signal transducer activity	2.83E-05
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.65E-04
10	GO:0045485: omega-6 fatty acid desaturase activity	2.65E-04
11	GO:0004333: fumarate hydratase activity	2.65E-04
12	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.65E-04
13	GO:0015250: water channel activity	4.98E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.83E-04
15	GO:0047746: chlorophyllase activity	5.83E-04
16	GO:0003839: gamma-glutamylcyclotransferase activity	5.83E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	5.83E-04
18	GO:0030247: polysaccharide binding	6.13E-04
19	GO:0004565: beta-galactosidase activity	7.76E-04
20	GO:0050734: hydroxycinnamoyltransferase activity	9.47E-04
21	GO:0045548: phenylalanine ammonia-lyase activity	9.47E-04
22	GO:0070402: NADPH binding	9.47E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
24	GO:0005528: FK506 binding	1.20E-03
25	GO:0003999: adenine phosphoribosyltransferase activity	1.35E-03
26	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.35E-03
27	GO:0016851: magnesium chelatase activity	1.35E-03
28	GO:0015293: symporter activity	1.49E-03
29	GO:0030570: pectate lyase activity	1.72E-03
30	GO:0010328: auxin influx transmembrane transporter activity	1.81E-03
31	GO:0052793: pectin acetylesterase activity	1.81E-03
32	GO:0042277: peptide binding	1.81E-03
33	GO:0004392: heme oxygenase (decyclizing) activity	1.81E-03
34	GO:0015120: phosphoglycerate transmembrane transporter activity	1.81E-03
35	GO:0010011: auxin binding	1.81E-03
36	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.81E-03
37	GO:0004130: cytochrome-c peroxidase activity	2.85E-03
38	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.85E-03
39	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.85E-03
40	GO:0016688: L-ascorbate peroxidase activity	2.85E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.85E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.85E-03
43	GO:0004629: phospholipase C activity	2.85E-03
44	GO:0016746: transferase activity, transferring acyl groups	3.04E-03
45	GO:0004518: nuclease activity	3.10E-03
46	GO:0051753: mannan synthase activity	3.43E-03
47	GO:0004017: adenylate kinase activity	3.43E-03
48	GO:0004435: phosphatidylinositol phospholipase C activity	3.43E-03
49	GO:0005242: inward rectifier potassium channel activity	3.43E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.43E-03
51	GO:0016791: phosphatase activity	3.51E-03
52	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.37E-03
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.46E-03
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.62E-03
55	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	6.03E-03
56	GO:0016491: oxidoreductase activity	6.21E-03
57	GO:0008017: microtubule binding	6.23E-03
58	GO:0015112: nitrate transmembrane transporter activity	6.83E-03
59	GO:0004568: chitinase activity	7.61E-03
60	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.98E-03
61	GO:0042802: identical protein binding	7.98E-03
62	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.26E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	1.01E-02
64	GO:0015114: phosphate ion transmembrane transporter activity	1.01E-02
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.04E-02
66	GO:0051287: NAD binding	1.08E-02
67	GO:0008266: poly(U) RNA binding	1.10E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.29E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.29E-02
70	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.29E-02
71	GO:0003777: microtubule motor activity	1.34E-02
72	GO:0004674: protein serine/threonine kinase activity	1.35E-02
73	GO:0051536: iron-sulfur cluster binding	1.39E-02
74	GO:0005215: transporter activity	1.41E-02
75	GO:0004176: ATP-dependent peptidase activity	1.59E-02
76	GO:0008810: cellulase activity	1.81E-02
77	GO:0022891: substrate-specific transmembrane transporter activity	1.81E-02
78	GO:0005515: protein binding	2.06E-02
79	GO:0030551: cyclic nucleotide binding	2.15E-02
80	GO:0005249: voltage-gated potassium channel activity	2.15E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.26E-02
82	GO:0004672: protein kinase activity	2.28E-02
83	GO:0016829: lyase activity	2.34E-02
84	GO:0050662: coenzyme binding	2.38E-02
85	GO:0016853: isomerase activity	2.38E-02
86	GO:0004872: receptor activity	2.51E-02
87	GO:0019901: protein kinase binding	2.51E-02
88	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.63E-02
89	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.78E-02
90	GO:0000156: phosphorelay response regulator activity	2.88E-02
91	GO:0051015: actin filament binding	2.88E-02
92	GO:0005200: structural constituent of cytoskeleton	3.15E-02
93	GO:0016597: amino acid binding	3.28E-02
94	GO:0016168: chlorophyll binding	3.56E-02
95	GO:0008375: acetylglucosaminyltransferase activity	3.70E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.84E-02
97	GO:0004222: metalloendopeptidase activity	4.43E-02
98	GO:0030145: manganese ion binding	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	9.71E-10
3	GO:0009507: chloroplast	1.10E-09
4	GO:0009535: chloroplast thylakoid membrane	4.00E-08
5	GO:0005886: plasma membrane	9.73E-07
6	GO:0009579: thylakoid	1.22E-06
7	GO:0009543: chloroplast thylakoid lumen	8.73E-06
8	GO:0048046: apoplast	9.32E-05
9	GO:0009515: granal stacked thylakoid	2.65E-04
10	GO:0045239: tricarboxylic acid cycle enzyme complex	2.65E-04
11	GO:0043674: columella	2.65E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.74E-04
13	GO:0030093: chloroplast photosystem I	5.83E-04
14	GO:0009941: chloroplast envelope	6.97E-04
15	GO:0010007: magnesium chelatase complex	9.47E-04
16	GO:0016021: integral component of membrane	1.02E-03
17	GO:0031977: thylakoid lumen	1.16E-03
18	GO:0009654: photosystem II oxygen evolving complex	1.32E-03
19	GO:0032432: actin filament bundle	1.35E-03
20	GO:0015630: microtubule cytoskeleton	1.35E-03
21	GO:0046658: anchored component of plasma membrane	1.69E-03
22	GO:0009570: chloroplast stroma	1.85E-03
23	GO:0031225: anchored component of membrane	2.16E-03
24	GO:0019898: extrinsic component of membrane	2.71E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.85E-03
26	GO:0031969: chloroplast membrane	2.98E-03
27	GO:0042807: central vacuole	4.04E-03
28	GO:0009986: cell surface	4.04E-03
29	GO:0008180: COP9 signalosome	6.09E-03
30	GO:0005618: cell wall	8.20E-03
31	GO:0005884: actin filament	8.42E-03
32	GO:0005887: integral component of plasma membrane	8.58E-03
33	GO:0032040: small-subunit processome	9.26E-03
34	GO:0009508: plastid chromosome	1.01E-02
35	GO:0005874: microtubule	1.29E-02
36	GO:0005871: kinesin complex	2.03E-02
37	GO:0010287: plastoglobule	2.05E-02
38	GO:0005770: late endosome	2.26E-02
39	GO:0005576: extracellular region	2.43E-02
40	GO:0009523: photosystem II	2.51E-02
41	GO:0009295: nucleoid	3.15E-02
42	GO:0010319: stromule	3.15E-02
43	GO:0009707: chloroplast outer membrane	4.13E-02
44	GO:0000151: ubiquitin ligase complex	4.13E-02
45	GO:0019005: SCF ubiquitin ligase complex	4.13E-02