co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G18480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0010027: thylakoid membrane organization	1.39E-08
8	GO:0032544: plastid translation	3.58E-08
9	GO:0009658: chloroplast organization	1.04E-07
10	GO:0006605: protein targeting	2.78E-06
11	GO:0006412: translation	3.07E-06
12	GO:0090391: granum assembly	6.80E-06
13	GO:0015995: chlorophyll biosynthetic process	2.48E-05
14	GO:0045038: protein import into chloroplast thylakoid membrane	4.65E-05
15	GO:0015979: photosynthesis	5.59E-05
16	GO:1901259: chloroplast rRNA processing	9.52E-05
17	GO:0009772: photosynthetic electron transport in photosystem II	1.26E-04
18	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.26E-04
19	GO:0010196: nonphotochemical quenching	1.26E-04
20	GO:0048564: photosystem I assembly	1.62E-04
21	GO:0006353: DNA-templated transcription, termination	1.62E-04
22	GO:0043489: RNA stabilization	1.98E-04
23	GO:0042371: vitamin K biosynthetic process	1.98E-04
24	GO:0034337: RNA folding	1.98E-04
25	GO:0071482: cellular response to light stimulus	2.01E-04
26	GO:0042254: ribosome biogenesis	2.02E-04
27	GO:0045036: protein targeting to chloroplast	3.43E-04
28	GO:0006352: DNA-templated transcription, initiation	3.97E-04
29	GO:0018026: peptidyl-lysine monomethylation	4.43E-04
30	GO:0006568: tryptophan metabolic process	4.43E-04
31	GO:0034755: iron ion transmembrane transport	4.43E-04
32	GO:0016024: CDP-diacylglycerol biosynthetic process	4.56E-04
33	GO:0009451: RNA modification	6.06E-04
34	GO:0046168: glycerol-3-phosphate catabolic process	7.22E-04
35	GO:0015675: nickel cation transport	7.22E-04
36	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.22E-04
37	GO:0009793: embryo development ending in seed dormancy	8.29E-04
38	GO:0006986: response to unfolded protein	1.03E-03
39	GO:2001141: regulation of RNA biosynthetic process	1.03E-03
40	GO:0009413: response to flooding	1.03E-03
41	GO:0051085: chaperone mediated protein folding requiring cofactor	1.03E-03
42	GO:0010239: chloroplast mRNA processing	1.03E-03
43	GO:0006072: glycerol-3-phosphate metabolic process	1.03E-03
44	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.14E-03
45	GO:0071483: cellular response to blue light	1.37E-03
46	GO:0010109: regulation of photosynthesis	1.37E-03
47	GO:0006564: L-serine biosynthetic process	1.74E-03
48	GO:0010236: plastoquinone biosynthetic process	1.74E-03
49	GO:0048497: maintenance of floral organ identity	1.74E-03
50	GO:0007094: mitotic spindle assembly checkpoint	1.74E-03
51	GO:0016032: viral process	2.04E-03
52	GO:0042793: transcription from plastid promoter	2.14E-03
53	GO:0000470: maturation of LSU-rRNA	2.14E-03
54	GO:0009913: epidermal cell differentiation	2.14E-03
55	GO:0006655: phosphatidylglycerol biosynthetic process	2.14E-03
56	GO:0009828: plant-type cell wall loosening	2.32E-03
57	GO:0042372: phylloquinone biosynthetic process	2.57E-03
58	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.57E-03
59	GO:0017148: negative regulation of translation	2.57E-03
60	GO:0006457: protein folding	2.57E-03
61	GO:0009790: embryo development	2.77E-03
62	GO:0006400: tRNA modification	3.03E-03
63	GO:0045292: mRNA cis splicing, via spliceosome	3.51E-03
64	GO:0042255: ribosome assembly	3.51E-03
65	GO:0010206: photosystem II repair	4.54E-03
66	GO:0000373: Group II intron splicing	4.54E-03
67	GO:0006779: porphyrin-containing compound biosynthetic process	5.10E-03
68	GO:1900865: chloroplast RNA modification	5.10E-03
69	GO:0030001: metal ion transport	5.17E-03
70	GO:0006949: syncytium formation	5.67E-03
71	GO:0006782: protoporphyrinogen IX biosynthetic process	5.67E-03
72	GO:0010114: response to red light	5.85E-03
73	GO:0009735: response to cytokinin	5.90E-03
74	GO:0009073: aromatic amino acid family biosynthetic process	6.27E-03
75	GO:0006879: cellular iron ion homeostasis	6.27E-03
76	GO:0009664: plant-type cell wall organization	7.34E-03
77	GO:2000012: regulation of auxin polar transport	7.52E-03
78	GO:0006364: rRNA processing	7.88E-03
79	GO:0010207: photosystem II assembly	8.19E-03
80	GO:0010143: cutin biosynthetic process	8.19E-03
81	GO:0090351: seedling development	8.87E-03
82	GO:0051017: actin filament bundle assembly	1.03E-02
83	GO:0051321: meiotic cell cycle	1.18E-02
84	GO:0009306: protein secretion	1.42E-02
85	GO:0080022: primary root development	1.59E-02
86	GO:0008033: tRNA processing	1.59E-02
87	GO:0042335: cuticle development	1.59E-02
88	GO:0007018: microtubule-based movement	1.76E-02
89	GO:0007059: chromosome segregation	1.76E-02
90	GO:0009646: response to absence of light	1.76E-02
91	GO:0048825: cotyledon development	1.85E-02
92	GO:0032502: developmental process	2.04E-02
93	GO:0030163: protein catabolic process	2.13E-02
94	GO:0010090: trichome morphogenesis	2.13E-02
95	GO:0009739: response to gibberellin	2.18E-02
96	GO:0009627: systemic acquired resistance	2.73E-02
97	GO:0009826: unidimensional cell growth	2.91E-02
98	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
99	GO:0009409: response to cold	3.06E-02
100	GO:0007568: aging	3.38E-02
101	GO:0009631: cold acclimation	3.38E-02
102	GO:0045087: innate immune response	3.61E-02
103	GO:0009637: response to blue light	3.61E-02
104	GO:0006508: proteolysis	3.82E-02
105	GO:0006855: drug transmembrane transport	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0019843: rRNA binding	3.34E-15
6	GO:0003735: structural constituent of ribosome	9.18E-08
7	GO:0005528: FK506 binding	1.06E-06
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.63E-06
9	GO:0043023: ribosomal large subunit binding	1.57E-05
10	GO:0016851: magnesium chelatase activity	1.57E-05
11	GO:0001053: plastid sigma factor activity	2.88E-05
12	GO:0016987: sigma factor activity	2.88E-05
13	GO:0051087: chaperone binding	5.18E-05
14	GO:0005080: protein kinase C binding	1.98E-04
15	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.98E-04
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.98E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.98E-04
18	GO:0003723: RNA binding	3.11E-04
19	GO:0016630: protochlorophyllide reductase activity	4.43E-04
20	GO:0015099: nickel cation transmembrane transporter activity	4.43E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
22	GO:0000774: adenyl-nucleotide exchange factor activity	4.43E-04
23	GO:0008266: poly(U) RNA binding	5.82E-04
24	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	7.22E-04
25	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
26	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
27	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.22E-04
28	GO:0004176: ATP-dependent peptidase activity	9.64E-04
29	GO:0008097: 5S rRNA binding	1.03E-03
30	GO:0016788: hydrolase activity, acting on ester bonds	1.16E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.37E-03
32	GO:0004659: prenyltransferase activity	1.37E-03
33	GO:0016279: protein-lysine N-methyltransferase activity	1.37E-03
34	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.37E-03
35	GO:0051082: unfolded protein binding	1.72E-03
36	GO:0003959: NADPH dehydrogenase activity	1.74E-03
37	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.14E-03
38	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.14E-03
39	GO:0008237: metallopeptidase activity	2.46E-03
40	GO:0043022: ribosome binding	3.51E-03
41	GO:0008312: 7S RNA binding	3.51E-03
42	GO:0004033: aldo-keto reductase (NADP) activity	3.51E-03
43	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.59E-03
44	GO:0047617: acyl-CoA hydrolase activity	5.10E-03
45	GO:0005381: iron ion transmembrane transporter activity	5.10E-03
46	GO:0051287: NAD binding	7.08E-03
47	GO:0008081: phosphoric diester hydrolase activity	7.52E-03
48	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.88E-03
49	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.19E-03
50	GO:0042803: protein homodimerization activity	1.05E-02
51	GO:0003729: mRNA binding	1.12E-02
52	GO:0005507: copper ion binding	1.15E-02
53	GO:0016746: transferase activity, transferring acyl groups	1.16E-02
54	GO:0003727: single-stranded RNA binding	1.42E-02
55	GO:0005525: GTP binding	1.43E-02
56	GO:0004519: endonuclease activity	1.44E-02
57	GO:0008080: N-acetyltransferase activity	1.67E-02
58	GO:0051015: actin filament binding	2.13E-02
59	GO:0016791: phosphatase activity	2.23E-02
60	GO:0008483: transaminase activity	2.33E-02
61	GO:0016597: amino acid binding	2.42E-02
62	GO:0008236: serine-type peptidase activity	2.94E-02
63	GO:0004222: metalloendopeptidase activity	3.27E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	3.96E-02
65	GO:0052689: carboxylic ester hydrolase activity	4.13E-02
66	GO:0004185: serine-type carboxypeptidase activity	4.32E-02
67	GO:0043621: protein self-association	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.34E-46
3	GO:0009570: chloroplast stroma	1.18E-36
4	GO:0009941: chloroplast envelope	1.56E-27
5	GO:0009579: thylakoid	1.03E-18
6	GO:0009535: chloroplast thylakoid membrane	1.50E-13
7	GO:0009543: chloroplast thylakoid lumen	5.05E-12
8	GO:0009534: chloroplast thylakoid	7.00E-11
9	GO:0031977: thylakoid lumen	8.53E-11
10	GO:0005840: ribosome	1.73E-10
11	GO:0010007: magnesium chelatase complex	6.80E-06
12	GO:0009654: photosystem II oxygen evolving complex	5.18E-05
13	GO:0019898: extrinsic component of membrane	1.57E-04
14	GO:0009547: plastid ribosome	1.98E-04
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.01E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	4.43E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.43E-04
18	GO:0030095: chloroplast photosystem II	5.82E-04
19	GO:0009536: plastid	6.56E-04
20	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.03E-03
21	GO:0005828: kinetochore microtubule	1.37E-03
22	GO:0031969: chloroplast membrane	1.56E-03
23	GO:0000776: kinetochore	1.74E-03
24	GO:0009295: nucleoid	2.46E-03
25	GO:0000777: condensed chromosome kinetochore	2.57E-03
26	GO:0009533: chloroplast stromal thylakoid	3.03E-03
27	GO:0005759: mitochondrial matrix	3.05E-03
28	GO:0005876: spindle microtubule	5.10E-03
29	GO:0090404: pollen tube tip	6.27E-03
30	GO:0000311: plastid large ribosomal subunit	6.89E-03
31	GO:0032040: small-subunit processome	6.89E-03
32	GO:0009508: plastid chromosome	7.52E-03
33	GO:0005578: proteinaceous extracellular matrix	7.52E-03
34	GO:0000312: plastid small ribosomal subunit	8.19E-03
35	GO:0005618: cell wall	8.40E-03
36	GO:0042651: thylakoid membrane	1.10E-02
37	GO:0009532: plastid stroma	1.18E-02
38	GO:0015629: actin cytoskeleton	1.34E-02
39	GO:0005623: cell	1.45E-02
40	GO:0043231: intracellular membrane-bounded organelle	1.46E-02
41	GO:0005871: kinesin complex	1.50E-02
42	GO:0009523: photosystem II	1.85E-02
43	GO:0030529: intracellular ribonucleoprotein complex	2.53E-02
44	GO:0046658: anchored component of plasma membrane	2.58E-02
45	GO:0009707: chloroplast outer membrane	3.05E-02
46	GO:0015934: large ribosomal subunit	3.38E-02
47	GO:0005856: cytoskeleton	4.70E-02