Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G17740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0006642: triglyceride mobilization0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0051503: adenine nucleotide transport0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0015805: S-adenosyl-L-methionine transport0.00E+00
12GO:0042371: vitamin K biosynthetic process0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:0002184: cytoplasmic translational termination0.00E+00
17GO:0032544: plastid translation5.37E-10
18GO:0009658: chloroplast organization1.31E-09
19GO:0006412: translation3.28E-09
20GO:0006695: cholesterol biosynthetic process2.91E-06
21GO:0010270: photosystem II oxygen evolving complex assembly2.91E-06
22GO:0006418: tRNA aminoacylation for protein translation8.68E-05
23GO:0042549: photosystem II stabilization1.01E-04
24GO:0015979: photosynthesis1.29E-04
25GO:0042372: phylloquinone biosynthetic process1.39E-04
26GO:0043489: RNA stabilization2.51E-04
27GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.51E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process2.51E-04
29GO:1904964: positive regulation of phytol biosynthetic process2.51E-04
30GO:0006430: lysyl-tRNA aminoacylation2.51E-04
31GO:0009657: plastid organization2.86E-04
32GO:0071482: cellular response to light stimulus2.86E-04
33GO:0045337: farnesyl diphosphate biosynthetic process3.46E-04
34GO:0033384: geranyl diphosphate biosynthetic process3.46E-04
35GO:0006779: porphyrin-containing compound biosynthetic process4.10E-04
36GO:0006782: protoporphyrinogen IX biosynthetic process4.80E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process5.53E-04
38GO:0006423: cysteinyl-tRNA aminoacylation5.53E-04
39GO:0006568: tryptophan metabolic process5.53E-04
40GO:0043039: tRNA aminoacylation5.53E-04
41GO:0043085: positive regulation of catalytic activity5.54E-04
42GO:0006415: translational termination5.54E-04
43GO:0006352: DNA-templated transcription, initiation5.54E-04
44GO:0010020: chloroplast fission8.08E-04
45GO:0010207: photosystem II assembly8.08E-04
46GO:0019253: reductive pentose-phosphate cycle8.08E-04
47GO:0010581: regulation of starch biosynthetic process8.99E-04
48GO:0019563: glycerol catabolic process8.99E-04
49GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition8.99E-04
50GO:0032504: multicellular organism reproduction8.99E-04
51GO:0090351: seedling development9.03E-04
52GO:0006241: CTP biosynthetic process1.28E-03
53GO:0046902: regulation of mitochondrial membrane permeability1.28E-03
54GO:0006165: nucleoside diphosphate phosphorylation1.28E-03
55GO:0006228: UTP biosynthetic process1.28E-03
56GO:0010088: phloem development1.28E-03
57GO:0006424: glutamyl-tRNA aminoacylation1.28E-03
58GO:0016556: mRNA modification1.28E-03
59GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.28E-03
60GO:2001141: regulation of RNA biosynthetic process1.28E-03
61GO:0006085: acetyl-CoA biosynthetic process1.71E-03
62GO:0006183: GTP biosynthetic process1.71E-03
63GO:0006021: inositol biosynthetic process1.71E-03
64GO:0071483: cellular response to blue light1.71E-03
65GO:0006808: regulation of nitrogen utilization1.71E-03
66GO:0042254: ribosome biogenesis1.95E-03
67GO:0000413: protein peptidyl-prolyl isomerization2.02E-03
68GO:0032543: mitochondrial translation2.19E-03
69GO:0006564: L-serine biosynthetic process2.19E-03
70GO:0010236: plastoquinone biosynthetic process2.19E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.19E-03
72GO:0031365: N-terminal protein amino acid modification2.19E-03
73GO:0009735: response to cytokinin2.56E-03
74GO:0016554: cytidine to uridine editing2.70E-03
75GO:0006828: manganese ion transport2.70E-03
76GO:0010190: cytochrome b6f complex assembly2.70E-03
77GO:0006014: D-ribose metabolic process2.70E-03
78GO:0000470: maturation of LSU-rRNA2.70E-03
79GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.24E-03
80GO:0009854: oxidative photosynthetic carbon pathway3.24E-03
81GO:0045454: cell redox homeostasis3.46E-03
82GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.82E-03
83GO:0006400: tRNA modification3.82E-03
84GO:0009772: photosynthetic electron transport in photosystem II3.82E-03
85GO:0010027: thylakoid membrane organization3.87E-03
86GO:0009790: embryo development4.29E-03
87GO:0000105: histidine biosynthetic process4.44E-03
88GO:0048564: photosystem I assembly4.44E-03
89GO:0015995: chlorophyll biosynthetic process4.55E-03
90GO:0006457: protein folding4.71E-03
91GO:0048481: plant ovule development5.04E-03
92GO:0018298: protein-chromophore linkage5.04E-03
93GO:0019430: removal of superoxide radicals5.08E-03
94GO:0010206: photosystem II repair5.75E-03
95GO:0006783: heme biosynthetic process5.75E-03
96GO:0009637: response to blue light6.39E-03
97GO:0009853: photorespiration6.39E-03
98GO:1900865: chloroplast RNA modification6.46E-03
99GO:0042761: very long-chain fatty acid biosynthetic process6.46E-03
100GO:0010380: regulation of chlorophyll biosynthetic process6.46E-03
101GO:0043067: regulation of programmed cell death6.46E-03
102GO:0006535: cysteine biosynthetic process from serine7.20E-03
103GO:0006631: fatty acid metabolic process7.59E-03
104GO:0006816: calcium ion transport7.96E-03
105GO:0009773: photosynthetic electron transport in photosystem I7.96E-03
106GO:0009073: aromatic amino acid family biosynthetic process7.96E-03
107GO:0018119: peptidyl-cysteine S-nitrosylation7.96E-03
108GO:0010114: response to red light8.24E-03
109GO:0045037: protein import into chloroplast stroma8.75E-03
110GO:0006790: sulfur compound metabolic process8.75E-03
111GO:0006094: gluconeogenesis9.57E-03
112GO:0006508: proteolysis1.02E-02
113GO:0046854: phosphatidylinositol phosphorylation1.13E-02
114GO:0051603: proteolysis involved in cellular protein catabolic process1.15E-02
115GO:0010025: wax biosynthetic process1.22E-02
116GO:0000027: ribosomal large subunit assembly1.31E-02
117GO:0007010: cytoskeleton organization1.31E-02
118GO:0019344: cysteine biosynthetic process1.31E-02
119GO:0006096: glycolytic process1.32E-02
120GO:0008299: isoprenoid biosynthetic process1.41E-02
121GO:0009768: photosynthesis, light harvesting in photosystem I1.41E-02
122GO:0009793: embryo development ending in seed dormancy1.58E-02
123GO:0006730: one-carbon metabolic process1.60E-02
124GO:0006396: RNA processing1.64E-02
125GO:0009411: response to UV1.71E-02
126GO:0016117: carotenoid biosynthetic process1.92E-02
127GO:0006629: lipid metabolic process1.99E-02
128GO:0042335: cuticle development2.02E-02
129GO:0080022: primary root development2.02E-02
130GO:0006662: glycerol ether metabolic process2.14E-02
131GO:0010197: polar nucleus fusion2.14E-02
132GO:0007018: microtubule-based movement2.25E-02
133GO:0019252: starch biosynthetic process2.36E-02
134GO:0006633: fatty acid biosynthetic process2.50E-02
135GO:0009451: RNA modification2.81E-02
136GO:0042128: nitrate assimilation3.49E-02
137GO:0009817: defense response to fungus, incompatible interaction3.90E-02
138GO:0010218: response to far red light4.18E-02
139GO:0009631: cold acclimation4.32E-02
140GO:0045087: innate immune response4.61E-02
141GO:0016051: carbohydrate biosynthetic process4.61E-02
142GO:0034599: cellular response to oxidative stress4.76E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0004401: histidinol-phosphatase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0052834: inositol monophosphate phosphatase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0019843: rRNA binding1.67E-17
13GO:0003735: structural constituent of ribosome1.22E-09
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.98E-08
15GO:0016149: translation release factor activity, codon specific2.38E-05
16GO:0016987: sigma factor activity4.33E-05
17GO:0001053: plastid sigma factor activity4.33E-05
18GO:0005528: FK506 binding7.44E-05
19GO:0051920: peroxiredoxin activity1.39E-04
20GO:0004812: aminoacyl-tRNA ligase activity1.66E-04
21GO:0016209: antioxidant activity2.32E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.51E-04
23GO:0004831: tyrosine-tRNA ligase activity2.51E-04
24GO:0004655: porphobilinogen synthase activity2.51E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity2.51E-04
26GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.51E-04
27GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.51E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity2.51E-04
29GO:0004824: lysine-tRNA ligase activity2.51E-04
30GO:0004807: triose-phosphate isomerase activity2.51E-04
31GO:0004337: geranyltranstransferase activity3.46E-04
32GO:0003747: translation release factor activity3.46E-04
33GO:0008047: enzyme activator activity4.80E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity5.53E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity5.53E-04
36GO:0050017: L-3-cyanoalanine synthase activity5.53E-04
37GO:0004618: phosphoglycerate kinase activity5.53E-04
38GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.53E-04
39GO:0004617: phosphoglycerate dehydrogenase activity5.53E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity5.53E-04
41GO:0004817: cysteine-tRNA ligase activity5.53E-04
42GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.53E-04
43GO:0004161: dimethylallyltranstransferase activity5.54E-04
44GO:0008266: poly(U) RNA binding8.08E-04
45GO:0070330: aromatase activity8.99E-04
46GO:0017150: tRNA dihydrouridine synthase activity8.99E-04
47GO:0002161: aminoacyl-tRNA editing activity8.99E-04
48GO:0004148: dihydrolipoyl dehydrogenase activity8.99E-04
49GO:0030267: glyoxylate reductase (NADP) activity8.99E-04
50GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.99E-04
51GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.99E-04
52GO:0004550: nucleoside diphosphate kinase activity1.28E-03
53GO:0043023: ribosomal large subunit binding1.28E-03
54GO:0008097: 5S rRNA binding1.28E-03
55GO:0003878: ATP citrate synthase activity1.28E-03
56GO:0043495: protein anchor1.71E-03
57GO:0004659: prenyltransferase activity1.71E-03
58GO:0005319: lipid transporter activity1.71E-03
59GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.71E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity1.71E-03
61GO:0003729: mRNA binding2.14E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor2.19E-03
63GO:0018685: alkane 1-monooxygenase activity2.19E-03
64GO:0005471: ATP:ADP antiporter activity2.19E-03
65GO:0004791: thioredoxin-disulfide reductase activity2.34E-03
66GO:0003723: RNA binding2.42E-03
67GO:0016208: AMP binding2.70E-03
68GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.05E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.24E-03
70GO:0102391: decanoate--CoA ligase activity3.24E-03
71GO:0004747: ribokinase activity3.24E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.24E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.24E-03
74GO:0004124: cysteine synthase activity3.24E-03
75GO:0019899: enzyme binding3.82E-03
76GO:0004467: long-chain fatty acid-CoA ligase activity3.82E-03
77GO:0016831: carboxy-lyase activity3.82E-03
78GO:0008235: metalloexopeptidase activity3.82E-03
79GO:0016168: chlorophyll binding4.09E-03
80GO:0004033: aldo-keto reductase (NADP) activity4.44E-03
81GO:0008865: fructokinase activity4.44E-03
82GO:0008312: 7S RNA binding4.44E-03
83GO:0003746: translation elongation factor activity6.39E-03
84GO:0005384: manganese ion transmembrane transporter activity6.46E-03
85GO:0047617: acyl-CoA hydrolase activity6.46E-03
86GO:0004177: aminopeptidase activity7.96E-03
87GO:0004185: serine-type carboxypeptidase activity8.24E-03
88GO:0000049: tRNA binding8.75E-03
89GO:0051537: 2 iron, 2 sulfur cluster binding8.92E-03
90GO:0005509: calcium ion binding8.93E-03
91GO:0004601: peroxidase activity9.25E-03
92GO:0008081: phosphoric diester hydrolase activity9.57E-03
93GO:0015095: magnesium ion transmembrane transporter activity9.57E-03
94GO:0031072: heat shock protein binding9.57E-03
95GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.11E-02
96GO:0031409: pigment binding1.22E-02
97GO:0019706: protein-cysteine S-palmitoyltransferase activity1.50E-02
98GO:0016740: transferase activity1.54E-02
99GO:0022891: substrate-specific transmembrane transporter activity1.71E-02
100GO:0047134: protein-disulfide reductase activity1.92E-02
101GO:0004519: endonuclease activity2.22E-02
102GO:0050662: coenzyme binding2.25E-02
103GO:0046872: metal ion binding2.66E-02
104GO:0008017: microtubule binding2.88E-02
105GO:0008237: metallopeptidase activity2.97E-02
106GO:0016597: amino acid binding3.10E-02
107GO:0042802: identical protein binding3.49E-02
108GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.76E-02
109GO:0008236: serine-type peptidase activity3.76E-02
110GO:0004222: metalloendopeptidase activity4.18E-02
111GO:0000987: core promoter proximal region sequence-specific DNA binding4.76E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.66E-62
2GO:0009570: chloroplast stroma9.83E-48
3GO:0009941: chloroplast envelope7.27E-35
4GO:0009535: chloroplast thylakoid membrane5.72E-20
5GO:0009579: thylakoid1.21E-18
6GO:0009543: chloroplast thylakoid lumen1.67E-17
7GO:0031977: thylakoid lumen1.83E-13
8GO:0005840: ribosome1.71E-08
9GO:0009534: chloroplast thylakoid8.87E-07
10GO:0009654: photosystem II oxygen evolving complex2.82E-06
11GO:0019898: extrinsic component of membrane1.42E-05
12GO:0000311: plastid large ribosomal subunit2.94E-05
13GO:0000312: plastid small ribosomal subunit4.43E-05
14GO:0031969: chloroplast membrane9.40E-05
15GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.51E-04
16GO:0043190: ATP-binding cassette (ABC) transporter complex2.51E-04
17GO:0009547: plastid ribosome2.51E-04
18GO:0009536: plastid4.10E-04
19GO:0009706: chloroplast inner membrane4.26E-04
20GO:0080085: signal recognition particle, chloroplast targeting5.53E-04
21GO:0030095: chloroplast photosystem II8.08E-04
22GO:0042651: thylakoid membrane1.22E-03
23GO:0009346: citrate lyase complex1.28E-03
24GO:0009523: photosystem II2.51E-03
25GO:0022625: cytosolic large ribosomal subunit2.84E-03
26GO:0005762: mitochondrial large ribosomal subunit3.24E-03
27GO:0010319: stromule3.44E-03
28GO:0009533: chloroplast stromal thylakoid3.82E-03
29GO:0030529: intracellular ribonucleoprotein complex3.87E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.08E-03
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.75E-03
32GO:0022627: cytosolic small ribosomal subunit7.58E-03
33GO:0046658: anchored component of plasma membrane7.58E-03
34GO:0016020: membrane7.90E-03
35GO:0030659: cytoplasmic vesicle membrane1.04E-02
36GO:0030076: light-harvesting complex1.13E-02
37GO:0005874: microtubule1.16E-02
38GO:0005875: microtubule associated complex1.22E-02
39GO:0015935: small ribosomal subunit1.50E-02
40GO:0009532: plastid stroma1.50E-02
41GO:0010287: plastoglobule1.89E-02
42GO:0005871: kinesin complex1.92E-02
43GO:0009522: photosystem I2.25E-02
44GO:0005759: mitochondrial matrix2.50E-02
45GO:0009295: nucleoid2.97E-02
46GO:0005778: peroxisomal membrane2.97E-02
47GO:0022626: cytosolic ribosome3.85E-02
48GO:0009707: chloroplast outer membrane3.90E-02
49GO:0015934: large ribosomal subunit4.32E-02
Gene type



Gene DE type