Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000188: inactivation of MAPK activity0.00E+00
2GO:0042908: xenobiotic transport0.00E+00
3GO:0042759: long-chain fatty acid biosynthetic process4.45E-05
4GO:1990641: response to iron ion starvation4.45E-05
5GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport4.45E-05
6GO:0006101: citrate metabolic process1.10E-04
7GO:0042325: regulation of phosphorylation1.10E-04
8GO:0097054: L-glutamate biosynthetic process1.10E-04
9GO:0031648: protein destabilization1.10E-04
10GO:1902066: regulation of cell wall pectin metabolic process1.10E-04
11GO:0060919: auxin influx1.10E-04
12GO:0048586: regulation of long-day photoperiodism, flowering1.89E-04
13GO:0032922: circadian regulation of gene expression1.89E-04
14GO:0080055: low-affinity nitrate transport1.89E-04
15GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.89E-04
16GO:0048281: inflorescence morphogenesis1.89E-04
17GO:1901672: positive regulation of systemic acquired resistance1.89E-04
18GO:0006537: glutamate biosynthetic process2.78E-04
19GO:0046513: ceramide biosynthetic process2.78E-04
20GO:0010104: regulation of ethylene-activated signaling pathway2.78E-04
21GO:0015700: arsenite transport2.78E-04
22GO:0080142: regulation of salicylic acid biosynthetic process3.73E-04
23GO:0019676: ammonia assimilation cycle3.73E-04
24GO:0009697: salicylic acid biosynthetic process4.75E-04
25GO:0006097: glyoxylate cycle4.75E-04
26GO:0000380: alternative mRNA splicing, via spliceosome4.75E-04
27GO:0010225: response to UV-C4.75E-04
28GO:0008219: cell death5.18E-04
29GO:0009817: defense response to fungus, incompatible interaction5.18E-04
30GO:0002238: response to molecule of fungal origin5.82E-04
31GO:0010315: auxin efflux5.82E-04
32GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response6.94E-04
33GO:0006102: isocitrate metabolic process9.32E-04
34GO:0009846: pollen germination1.03E-03
35GO:0006075: (1->3)-beta-D-glucan biosynthetic process1.06E-03
36GO:0010112: regulation of systemic acquired resistance1.19E-03
37GO:0046685: response to arsenic-containing substance1.19E-03
38GO:0009698: phenylpropanoid metabolic process1.61E-03
39GO:0015706: nitrate transport1.77E-03
40GO:0002213: defense response to insect1.77E-03
41GO:0055046: microgametogenesis1.92E-03
42GO:0010540: basipetal auxin transport2.09E-03
43GO:0002237: response to molecule of bacterial origin2.09E-03
44GO:0070588: calcium ion transmembrane transport2.25E-03
45GO:0016998: cell wall macromolecule catabolic process2.96E-03
46GO:2000022: regulation of jasmonic acid mediated signaling pathway3.14E-03
47GO:0031348: negative regulation of defense response3.14E-03
48GO:0071456: cellular response to hypoxia3.14E-03
49GO:0010584: pollen exine formation3.53E-03
50GO:0009561: megagametogenesis3.53E-03
51GO:0008360: regulation of cell shape4.14E-03
52GO:0009630: gravitropism4.99E-03
53GO:0009607: response to biotic stimulus6.39E-03
54GO:0009816: defense response to bacterium, incompatible interaction6.39E-03
55GO:0042128: nitrate assimilation6.64E-03
56GO:0006888: ER to Golgi vesicle-mediated transport6.89E-03
57GO:0032259: methylation7.07E-03
58GO:0048767: root hair elongation7.65E-03
59GO:0006499: N-terminal protein myristoylation7.91E-03
60GO:0007568: aging8.18E-03
61GO:0009631: cold acclimation8.18E-03
62GO:0045087: innate immune response8.71E-03
63GO:0046686: response to cadmium ion8.87E-03
64GO:0006099: tricarboxylic acid cycle8.99E-03
65GO:0006631: fatty acid metabolic process9.83E-03
66GO:0009926: auxin polar transport1.04E-02
67GO:0006855: drug transmembrane transport1.16E-02
68GO:0010224: response to UV-B1.32E-02
69GO:0006857: oligopeptide transport1.35E-02
70GO:0048367: shoot system development1.48E-02
71GO:0009620: response to fungus1.55E-02
72GO:0055085: transmembrane transport1.67E-02
73GO:0000398: mRNA splicing, via spliceosome1.83E-02
74GO:0006468: protein phosphorylation2.01E-02
75GO:0006633: fatty acid biosynthetic process2.27E-02
76GO:0010150: leaf senescence2.43E-02
77GO:0006470: protein dephosphorylation2.68E-02
78GO:0007166: cell surface receptor signaling pathway2.68E-02
79GO:0009617: response to bacterium2.76E-02
80GO:0006970: response to osmotic stress3.50E-02
81GO:0009860: pollen tube growth3.50E-02
82GO:0007049: cell cycle3.59E-02
83GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.96E-02
84GO:0046777: protein autophosphorylation4.06E-02
85GO:0006952: defense response4.37E-02
RankGO TermAdjusted P value
1GO:0015930: glutamate synthase activity0.00E+00
2GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
3GO:0071992: phytochelatin transmembrane transporter activity4.45E-05
4GO:0016041: glutamate synthase (ferredoxin) activity4.45E-05
5GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity4.45E-05
6GO:0030623: U5 snRNA binding4.45E-05
7GO:0015446: ATPase-coupled arsenite transmembrane transporter activity4.45E-05
8GO:0008559: xenobiotic-transporting ATPase activity4.59E-05
9GO:0005516: calmodulin binding7.80E-05
10GO:0050291: sphingosine N-acyltransferase activity1.10E-04
11GO:0003958: NADPH-hemoprotein reductase activity1.10E-04
12GO:0003994: aconitate hydratase activity1.10E-04
13GO:0080054: low-affinity nitrate transmembrane transporter activity1.89E-04
14GO:0010328: auxin influx transmembrane transporter activity3.73E-04
15GO:0051538: 3 iron, 4 sulfur cluster binding4.75E-04
16GO:0017070: U6 snRNA binding4.75E-04
17GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.92E-04
18GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.94E-04
19GO:0102391: decanoate--CoA ligase activity6.94E-04
20GO:0004467: long-chain fatty acid-CoA ligase activity8.11E-04
21GO:0004033: aldo-keto reductase (NADP) activity9.32E-04
22GO:0003843: 1,3-beta-D-glucan synthase activity1.06E-03
23GO:0005524: ATP binding1.84E-03
24GO:0004022: alcohol dehydrogenase (NAD) activity1.92E-03
25GO:0019888: protein phosphatase regulator activity1.92E-03
26GO:0005388: calcium-transporting ATPase activity1.92E-03
27GO:0010329: auxin efflux transmembrane transporter activity1.92E-03
28GO:0004725: protein tyrosine phosphatase activity2.42E-03
29GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.33E-03
30GO:0008168: methyltransferase activity3.89E-03
31GO:0010181: FMN binding4.35E-03
32GO:0051539: 4 iron, 4 sulfur cluster binding9.55E-03
33GO:0004674: protein serine/threonine kinase activity1.02E-02
34GO:0015293: symporter activity1.13E-02
35GO:0005198: structural molecule activity1.13E-02
36GO:0016301: kinase activity2.18E-02
37GO:0015144: carbohydrate transmembrane transporter activity2.20E-02
38GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.31E-02
39GO:0005351: sugar:proton symporter activity2.39E-02
40GO:0042802: identical protein binding2.88E-02
41GO:0005215: transporter activity2.95E-02
42GO:0016491: oxidoreductase activity3.50E-02
43GO:0004842: ubiquitin-protein transferase activity3.68E-02
RankGO TermAdjusted P value
1GO:0030126: COPI vesicle coat4.75E-04
2GO:0000148: 1,3-beta-D-glucan synthase complex1.06E-03
3GO:0005886: plasma membrane1.18E-03
4GO:0005770: late endosome4.14E-03
5GO:0009504: cell plate4.56E-03
6GO:0000325: plant-type vacuole8.18E-03
7GO:0005819: spindle9.27E-03
8GO:0005829: cytosol1.28E-02
9GO:0005635: nuclear envelope1.35E-02
10GO:0009506: plasmodesma1.45E-02
11GO:0005681: spliceosomal complex1.45E-02
12GO:0009524: phragmoplast2.01E-02
13GO:0016020: membrane2.60E-02
14GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.55E-02
15GO:0005789: endoplasmic reticulum membrane4.06E-02
16GO:0005730: nucleolus4.49E-02
Gene type



Gene DE type