Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16155

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0006642: triglyceride mobilization0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0006573: valine metabolic process0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
12GO:0009658: chloroplast organization1.05E-10
13GO:0032544: plastid translation6.97E-10
14GO:0006412: translation7.12E-09
15GO:0015979: photosynthesis1.70E-07
16GO:1902326: positive regulation of chlorophyll biosynthetic process3.29E-06
17GO:0042254: ribosome biogenesis7.90E-06
18GO:0015976: carbon utilization4.83E-05
19GO:0006546: glycine catabolic process4.83E-05
20GO:0010207: photosystem II assembly5.12E-05
21GO:0019253: reductive pentose-phosphate cycle5.12E-05
22GO:0042549: photosystem II stabilization1.12E-04
23GO:1901259: chloroplast rRNA processing1.53E-04
24GO:0006633: fatty acid biosynthetic process1.60E-04
25GO:0009735: response to cytokinin1.76E-04
26GO:0045454: cell redox homeostasis1.79E-04
27GO:0000413: protein peptidyl-prolyl isomerization2.11E-04
28GO:0060627: regulation of vesicle-mediated transport2.68E-04
29GO:0043489: RNA stabilization2.68E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process2.68E-04
31GO:1904964: positive regulation of phytol biosynthetic process2.68E-04
32GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.68E-04
33GO:0006551: leucine metabolic process2.68E-04
34GO:0042371: vitamin K biosynthetic process2.68E-04
35GO:0042742: defense response to bacterium3.10E-04
36GO:0010027: thylakoid membrane organization5.06E-04
37GO:0043039: tRNA aminoacylation5.89E-04
38GO:0006695: cholesterol biosynthetic process5.89E-04
39GO:0006423: cysteinyl-tRNA aminoacylation5.89E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process5.89E-04
41GO:0009073: aromatic amino acid family biosynthetic process6.07E-04
42GO:0043085: positive regulation of catalytic activity6.07E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation6.07E-04
44GO:0006790: sulfur compound metabolic process6.94E-04
45GO:0009817: defense response to fungus, incompatible interaction7.09E-04
46GO:0010020: chloroplast fission8.84E-04
47GO:0032504: multicellular organism reproduction9.55E-04
48GO:0006954: inflammatory response9.55E-04
49GO:0019563: glycerol catabolic process9.55E-04
50GO:0006518: peptide metabolic process9.55E-04
51GO:0010581: regulation of starch biosynthetic process9.55E-04
52GO:0071492: cellular response to UV-A9.55E-04
53GO:0006696: ergosterol biosynthetic process9.55E-04
54GO:2001295: malonyl-CoA biosynthetic process9.55E-04
55GO:0046854: phosphatidylinositol phosphorylation9.87E-04
56GO:0006418: tRNA aminoacylation for protein translation1.33E-03
57GO:0006241: CTP biosynthetic process1.36E-03
58GO:0019048: modulation by virus of host morphology or physiology1.36E-03
59GO:0006424: glutamyl-tRNA aminoacylation1.36E-03
60GO:0006165: nucleoside diphosphate phosphorylation1.36E-03
61GO:0006228: UTP biosynthetic process1.36E-03
62GO:0031048: chromatin silencing by small RNA1.36E-03
63GO:0010088: phloem development1.36E-03
64GO:0016556: mRNA modification1.36E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.36E-03
66GO:2001141: regulation of RNA biosynthetic process1.36E-03
67GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.74E-03
68GO:0071486: cellular response to high light intensity1.83E-03
69GO:0019464: glycine decarboxylation via glycine cleavage system1.83E-03
70GO:0009765: photosynthesis, light harvesting1.83E-03
71GO:0006183: GTP biosynthetic process1.83E-03
72GO:2000122: negative regulation of stomatal complex development1.83E-03
73GO:0006021: inositol biosynthetic process1.83E-03
74GO:0051567: histone H3-K9 methylation1.83E-03
75GO:0010037: response to carbon dioxide1.83E-03
76GO:0006808: regulation of nitrogen utilization1.83E-03
77GO:0016117: carotenoid biosynthetic process2.05E-03
78GO:0016123: xanthophyll biosynthetic process2.33E-03
79GO:0032543: mitochondrial translation2.33E-03
80GO:0016120: carotene biosynthetic process2.33E-03
81GO:0031365: N-terminal protein amino acid modification2.33E-03
82GO:0006096: glycolytic process2.36E-03
83GO:0055114: oxidation-reduction process2.71E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.88E-03
85GO:0016554: cytidine to uridine editing2.88E-03
86GO:0010190: cytochrome b6f complex assembly2.88E-03
87GO:0016458: gene silencing2.88E-03
88GO:0032502: developmental process3.14E-03
89GO:0009955: adaxial/abaxial pattern specification3.46E-03
90GO:0042372: phylloquinone biosynthetic process3.46E-03
91GO:0009082: branched-chain amino acid biosynthetic process3.46E-03
92GO:0006694: steroid biosynthetic process3.46E-03
93GO:0009099: valine biosynthetic process3.46E-03
94GO:0009854: oxidative photosynthetic carbon pathway3.46E-03
95GO:0010555: response to mannitol3.46E-03
96GO:0009828: plant-type cell wall loosening3.56E-03
97GO:0006400: tRNA modification4.08E-03
98GO:0030091: protein repair4.73E-03
99GO:0009642: response to light intensity4.73E-03
100GO:0042255: ribosome assembly4.73E-03
101GO:0006353: DNA-templated transcription, termination4.73E-03
102GO:0000105: histidine biosynthetic process4.73E-03
103GO:0009790: embryo development4.83E-03
104GO:0015995: chlorophyll biosynthetic process5.00E-03
105GO:0071482: cellular response to light stimulus5.42E-03
106GO:0019430: removal of superoxide radicals5.42E-03
107GO:0009097: isoleucine biosynthetic process5.42E-03
108GO:0009808: lignin metabolic process5.42E-03
109GO:0018298: protein-chromophore linkage5.54E-03
110GO:0006457: protein folding5.56E-03
111GO:0045337: farnesyl diphosphate biosynthetic process6.14E-03
112GO:0033384: geranyl diphosphate biosynthetic process6.14E-03
113GO:0006783: heme biosynthetic process6.14E-03
114GO:0048589: developmental growth6.14E-03
115GO:0009409: response to cold6.73E-03
116GO:0009793: embryo development ending in seed dormancy6.85E-03
117GO:0043067: regulation of programmed cell death6.90E-03
118GO:0006779: porphyrin-containing compound biosynthetic process6.90E-03
119GO:1900865: chloroplast RNA modification6.90E-03
120GO:0010380: regulation of chlorophyll biosynthetic process6.90E-03
121GO:0009637: response to blue light7.02E-03
122GO:0006949: syncytium formation7.68E-03
123GO:0006782: protoporphyrinogen IX biosynthetic process7.68E-03
124GO:0030422: production of siRNA involved in RNA interference7.68E-03
125GO:0043069: negative regulation of programmed cell death7.68E-03
126GO:0006631: fatty acid metabolic process8.35E-03
127GO:0009773: photosynthetic electron transport in photosystem I8.50E-03
128GO:0006352: DNA-templated transcription, initiation8.50E-03
129GO:0006415: translational termination8.50E-03
130GO:0046686: response to cadmium ion8.85E-03
131GO:0010114: response to red light9.06E-03
132GO:0045037: protein import into chloroplast stroma9.35E-03
133GO:0009826: unidimensional cell growth9.94E-03
134GO:0006094: gluconeogenesis1.02E-02
135GO:0009664: plant-type cell wall organization1.14E-02
136GO:0009416: response to light stimulus1.31E-02
137GO:0019344: cysteine biosynthetic process1.40E-02
138GO:0000027: ribosomal large subunit assembly1.40E-02
139GO:0007010: cytoskeleton organization1.40E-02
140GO:0009768: photosynthesis, light harvesting in photosystem I1.50E-02
141GO:0007017: microtubule-based process1.50E-02
142GO:0006306: DNA methylation1.61E-02
143GO:0080092: regulation of pollen tube growth1.71E-02
144GO:0009411: response to UV1.82E-02
145GO:0019722: calcium-mediated signaling1.94E-02
146GO:0042335: cuticle development2.17E-02
147GO:0080022: primary root development2.17E-02
148GO:0008033: tRNA processing2.17E-02
149GO:0006342: chromatin silencing2.29E-02
150GO:0009741: response to brassinosteroid2.29E-02
151GO:0006662: glycerol ether metabolic process2.29E-02
152GO:0010197: polar nucleus fusion2.29E-02
153GO:0009646: response to absence of light2.41E-02
154GO:0007018: microtubule-based movement2.41E-02
155GO:0016132: brassinosteroid biosynthetic process2.65E-02
156GO:1901657: glycosyl compound metabolic process2.91E-02
157GO:0045490: pectin catabolic process3.02E-02
158GO:0071805: potassium ion transmembrane transport3.18E-02
159GO:0007267: cell-cell signaling3.18E-02
160GO:0051607: defense response to virus3.31E-02
161GO:0009816: defense response to bacterium, incompatible interaction3.59E-02
162GO:0042128: nitrate assimilation3.73E-02
163GO:0048481: plant ovule development4.17E-02
164GO:0048767: root hair elongation4.32E-02
165GO:0009834: plant-type secondary cell wall biogenesis4.47E-02
166GO:0009407: toxin catabolic process4.47E-02
167GO:0010218: response to far red light4.47E-02
168GO:0010119: regulation of stomatal movement4.62E-02
169GO:0009631: cold acclimation4.62E-02
170GO:0009853: photorespiration4.93E-02
171GO:0045087: innate immune response4.93E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004401: histidinol-phosphatase activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0046905: phytoene synthase activity0.00E+00
16GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
17GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
18GO:0019843: rRNA binding7.47E-19
19GO:0003735: structural constituent of ribosome2.41E-09
20GO:0051920: peroxiredoxin activity1.60E-08
21GO:0016209: antioxidant activity5.72E-08
22GO:0004618: phosphoglycerate kinase activity3.29E-06
23GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.29E-06
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.93E-05
25GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.53E-04
26GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.68E-04
27GO:0004807: triose-phosphate isomerase activity2.68E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.68E-04
29GO:0080132: fatty acid alpha-hydroxylase activity2.68E-04
30GO:0004831: tyrosine-tRNA ligase activity2.68E-04
31GO:0004655: porphobilinogen synthase activity2.68E-04
32GO:0003984: acetolactate synthase activity2.68E-04
33GO:0051996: squalene synthase activity2.68E-04
34GO:0010347: L-galactose-1-phosphate phosphatase activity2.68E-04
35GO:0008047: enzyme activator activity5.26E-04
36GO:0016168: chlorophyll binding5.44E-04
37GO:0004047: aminomethyltransferase activity5.89E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity5.89E-04
39GO:0004817: cysteine-tRNA ligase activity5.89E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity5.89E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity5.89E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.89E-04
43GO:0004089: carbonate dehydratase activity7.86E-04
44GO:0031072: heat shock protein binding7.86E-04
45GO:0008266: poly(U) RNA binding8.84E-04
46GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.55E-04
47GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.55E-04
48GO:0070330: aromatase activity9.55E-04
49GO:0017150: tRNA dihydrouridine synthase activity9.55E-04
50GO:0002161: aminoacyl-tRNA editing activity9.55E-04
51GO:0004075: biotin carboxylase activity9.55E-04
52GO:0030267: glyoxylate reductase (NADP) activity9.55E-04
53GO:0008097: 5S rRNA binding1.36E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.36E-03
55GO:0016149: translation release factor activity, codon specific1.36E-03
56GO:0035197: siRNA binding1.36E-03
57GO:0004550: nucleoside diphosphate kinase activity1.36E-03
58GO:0043023: ribosomal large subunit binding1.36E-03
59GO:0022891: substrate-specific transmembrane transporter activity1.74E-03
60GO:0030570: pectate lyase activity1.74E-03
61GO:0001053: plastid sigma factor activity1.83E-03
62GO:0016836: hydro-lyase activity1.83E-03
63GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.83E-03
64GO:0004045: aminoacyl-tRNA hydrolase activity1.83E-03
65GO:0016987: sigma factor activity1.83E-03
66GO:0043495: protein anchor1.83E-03
67GO:0004659: prenyltransferase activity1.83E-03
68GO:0004812: aminoacyl-tRNA ligase activity2.05E-03
69GO:0004601: peroxidase activity2.19E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor2.33E-03
71GO:0018685: alkane 1-monooxygenase activity2.33E-03
72GO:0003989: acetyl-CoA carboxylase activity2.33E-03
73GO:0004791: thioredoxin-disulfide reductase activity2.56E-03
74GO:0016208: AMP binding2.88E-03
75GO:0008200: ion channel inhibitor activity2.88E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.35E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.46E-03
78GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.46E-03
79GO:0005200: structural constituent of cytoskeleton3.78E-03
80GO:0016831: carboxy-lyase activity4.08E-03
81GO:0008235: metalloexopeptidase activity4.08E-03
82GO:0019899: enzyme binding4.08E-03
83GO:0004033: aldo-keto reductase (NADP) activity4.73E-03
84GO:0003924: GTPase activity5.50E-03
85GO:0004222: metalloendopeptidase activity6.11E-03
86GO:0004337: geranyltranstransferase activity6.14E-03
87GO:0003747: translation release factor activity6.14E-03
88GO:0047617: acyl-CoA hydrolase activity6.90E-03
89GO:0003746: translation elongation factor activity7.02E-03
90GO:0005525: GTP binding8.44E-03
91GO:0004161: dimethylallyltranstransferase activity8.50E-03
92GO:0005089: Rho guanyl-nucleotide exchange factor activity8.50E-03
93GO:0004177: aminopeptidase activity8.50E-03
94GO:0004521: endoribonuclease activity9.35E-03
95GO:0000049: tRNA binding9.35E-03
96GO:0051537: 2 iron, 2 sulfur cluster binding9.81E-03
97GO:0004565: beta-galactosidase activity1.02E-02
98GO:0031409: pigment binding1.30E-02
99GO:0005528: FK506 binding1.40E-02
100GO:0015079: potassium ion transmembrane transporter activity1.50E-02
101GO:0019706: protein-cysteine S-palmitoyltransferase activity1.61E-02
102GO:0051082: unfolded protein binding1.75E-02
103GO:0003723: RNA binding1.76E-02
104GO:0016740: transferase activity1.77E-02
105GO:0016491: oxidoreductase activity1.94E-02
106GO:0003727: single-stranded RNA binding1.94E-02
107GO:0047134: protein-disulfide reductase activity2.05E-02
108GO:0003729: mRNA binding2.39E-02
109GO:0050662: coenzyme binding2.41E-02
110GO:0008483: transaminase activity3.18E-02
111GO:0008237: metallopeptidase activity3.18E-02
112GO:0016597: amino acid binding3.31E-02
113GO:0046872: metal ion binding3.57E-02
114GO:0042802: identical protein binding3.83E-02
115GO:0102483: scopolin beta-glucosidase activity3.88E-02
116GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.02E-02
117GO:0008236: serine-type peptidase activity4.02E-02
118GO:0000287: magnesium ion binding4.57E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.62E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009507: chloroplast1.60E-58
5GO:0009570: chloroplast stroma1.17E-50
6GO:0009941: chloroplast envelope5.53E-34
7GO:0009579: thylakoid1.05E-23
8GO:0009535: chloroplast thylakoid membrane8.12E-22
9GO:0009543: chloroplast thylakoid lumen1.54E-12
10GO:0005840: ribosome2.82E-10
11GO:0031977: thylakoid lumen5.16E-10
12GO:0009534: chloroplast thylakoid1.27E-08
13GO:0009654: photosystem II oxygen evolving complex3.46E-06
14GO:0010319: stromule3.32E-05
15GO:0000311: plastid large ribosomal subunit3.41E-05
16GO:0048046: apoplast9.83E-05
17GO:0042651: thylakoid membrane9.96E-05
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.68E-04
19GO:0009547: plastid ribosome2.68E-04
20GO:0009523: photosystem II2.85E-04
21GO:0019898: extrinsic component of membrane2.85E-04
22GO:0030095: chloroplast photosystem II8.84E-04
23GO:0005960: glycine cleavage complex1.36E-03
24GO:0005719: nuclear euchromatin1.36E-03
25GO:0009706: chloroplast inner membrane2.98E-03
26GO:0031969: chloroplast membrane3.04E-03
27GO:0022626: cytosolic ribosome3.27E-03
28GO:0010287: plastoglobule3.71E-03
29GO:0009533: chloroplast stromal thylakoid4.08E-03
30GO:0030529: intracellular ribonucleoprotein complex4.25E-03
31GO:0009539: photosystem II reaction center5.42E-03
32GO:0009536: plastid5.55E-03
33GO:0009505: plant-type cell wall5.79E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.14E-03
35GO:0045298: tubulin complex6.14E-03
36GO:0005763: mitochondrial small ribosomal subunit6.14E-03
37GO:0015030: Cajal body6.90E-03
38GO:0016324: apical plasma membrane7.68E-03
39GO:0046658: anchored component of plasma membrane8.55E-03
40GO:0030659: cytoplasmic vesicle membrane1.11E-02
41GO:0000312: plastid small ribosomal subunit1.11E-02
42GO:0016020: membrane1.15E-02
43GO:0030076: light-harvesting complex1.21E-02
44GO:0005875: microtubule associated complex1.30E-02
45GO:0005874: microtubule1.31E-02
46GO:0022625: cytosolic large ribosomal subunit1.46E-02
47GO:0015935: small ribosomal subunit1.61E-02
48GO:0009532: plastid stroma1.61E-02
49GO:0005871: kinesin complex2.05E-02
50GO:0005618: cell wall2.13E-02
51GO:0009522: photosystem I2.41E-02
52GO:0005778: peroxisomal membrane3.18E-02
53GO:0015934: large ribosomal subunit4.62E-02
Gene type



Gene DE type