co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G15510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0090042: tubulin deacetylation	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0042371: vitamin K biosynthetic process	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0002184: cytoplasmic translational termination	0.00E+00
12	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
13	GO:0015979: photosynthesis	6.46E-13
14	GO:0010027: thylakoid membrane organization	7.33E-10
15	GO:0009658: chloroplast organization	9.30E-10
16	GO:0032544: plastid translation	6.65E-08
17	GO:0015995: chlorophyll biosynthetic process	1.88E-06
18	GO:0010196: nonphotochemical quenching	2.93E-06
19	GO:0090391: granum assembly	9.64E-06
20	GO:0009773: photosynthetic electron transport in photosystem I	2.08E-05
21	GO:0010207: photosystem II assembly	3.98E-05
22	GO:0042254: ribosome biogenesis	4.84E-05
23	GO:0045038: protein import into chloroplast thylakoid membrane	6.36E-05
24	GO:0042549: photosystem II stabilization	9.33E-05
25	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.69E-04
26	GO:0009772: photosynthetic electron transport in photosystem II	1.69E-04
27	GO:0006412: translation	2.02E-04
28	GO:0006605: protein targeting	2.16E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	2.39E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.39E-04
31	GO:0034337: RNA folding	2.39E-04
32	GO:0071588: hydrogen peroxide mediated signaling pathway	2.39E-04
33	GO:0071482: cellular response to light stimulus	2.67E-04
34	GO:0000373: Group II intron splicing	3.23E-04
35	GO:0043085: positive regulation of catalytic activity	5.19E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.29E-04
37	GO:0034755: iron ion transmembrane transport	5.29E-04
38	GO:0018026: peptidyl-lysine monomethylation	5.29E-04
39	GO:0009662: etioplast organization	5.29E-04
40	GO:0006568: tryptophan metabolic process	5.29E-04
41	GO:0010270: photosystem II oxygen evolving complex assembly	5.29E-04
42	GO:0018298: protein-chromophore linkage	5.78E-04
43	GO:0016024: CDP-diacylglycerol biosynthetic process	5.92E-04
44	GO:0010581: regulation of starch biosynthetic process	8.60E-04
45	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.60E-04
46	GO:0006457: protein folding	1.11E-03
47	GO:0009768: photosynthesis, light harvesting in photosystem I	1.14E-03
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.23E-03
49	GO:0016556: mRNA modification	1.23E-03
50	GO:2001141: regulation of RNA biosynthetic process	1.23E-03
51	GO:0010371: regulation of gibberellin biosynthetic process	1.23E-03
52	GO:0009152: purine ribonucleotide biosynthetic process	1.23E-03
53	GO:0046653: tetrahydrofolate metabolic process	1.23E-03
54	GO:0045727: positive regulation of translation	1.64E-03
55	GO:0015994: chlorophyll metabolic process	1.64E-03
56	GO:0010109: regulation of photosynthesis	1.64E-03
57	GO:0000413: protein peptidyl-prolyl isomerization	1.89E-03
58	GO:0006564: L-serine biosynthetic process	2.09E-03
59	GO:0010236: plastoquinone biosynthetic process	2.09E-03
60	GO:0031365: N-terminal protein amino acid modification	2.09E-03
61	GO:0009735: response to cytokinin	2.26E-03
62	GO:0006828: manganese ion transport	2.57E-03
63	GO:0006655: phosphatidylglycerol biosynthetic process	2.57E-03
64	GO:0042793: transcription from plastid promoter	2.57E-03
65	GO:0010190: cytochrome b6f complex assembly	2.57E-03
66	GO:0000470: maturation of LSU-rRNA	2.57E-03
67	GO:0042372: phylloquinone biosynthetic process	3.09E-03
68	GO:1901259: chloroplast rRNA processing	3.09E-03
69	GO:0009082: branched-chain amino acid biosynthetic process	3.09E-03
70	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.09E-03
71	GO:0009099: valine biosynthetic process	3.09E-03
72	GO:0010019: chloroplast-nucleus signaling pathway	3.09E-03
73	GO:0045454: cell redox homeostasis	3.11E-03
74	GO:0009645: response to low light intensity stimulus	3.64E-03
75	GO:0006400: tRNA modification	3.64E-03
76	GO:0042744: hydrogen peroxide catabolic process	3.80E-03
77	GO:0048564: photosystem I assembly	4.23E-03
78	GO:0045292: mRNA cis splicing, via spliceosome	4.23E-03
79	GO:0019430: removal of superoxide radicals	4.84E-03
80	GO:0009097: isoleucine biosynthetic process	4.84E-03
81	GO:0006098: pentose-phosphate shunt	5.48E-03
82	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.48E-03
83	GO:0034765: regulation of ion transmembrane transport	5.48E-03
84	GO:0009051: pentose-phosphate shunt, oxidative branch	5.48E-03
85	GO:0009637: response to blue light	5.96E-03
86	GO:0009098: leucine biosynthetic process	6.15E-03
87	GO:0010380: regulation of chlorophyll biosynthetic process	6.15E-03
88	GO:0006779: porphyrin-containing compound biosynthetic process	6.15E-03
89	GO:0034599: cellular response to oxidative stress	6.23E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	6.85E-03
91	GO:0006816: calcium ion transport	7.58E-03
92	GO:0008285: negative regulation of cell proliferation	7.58E-03
93	GO:0006415: translational termination	7.58E-03
94	GO:0006879: cellular iron ion homeostasis	7.58E-03
95	GO:0006352: DNA-templated transcription, initiation	7.58E-03
96	GO:0010114: response to red light	7.68E-03
97	GO:0010628: positive regulation of gene expression	9.11E-03
98	GO:0006006: glucose metabolic process	9.11E-03
99	GO:0006094: gluconeogenesis	9.11E-03
100	GO:0010143: cutin biosynthetic process	9.92E-03
101	GO:0010020: chloroplast fission	9.92E-03
102	GO:0006364: rRNA processing	1.04E-02
103	GO:0000027: ribosomal large subunit assembly	1.25E-02
104	GO:0007010: cytoskeleton organization	1.25E-02
105	GO:0016575: histone deacetylation	1.34E-02
106	GO:0006418: tRNA aminoacylation for protein translation	1.34E-02
107	GO:0009695: jasmonic acid biosynthetic process	1.34E-02
108	GO:0010073: meristem maintenance	1.34E-02
109	GO:0031408: oxylipin biosynthetic process	1.43E-02
110	GO:0016226: iron-sulfur cluster assembly	1.53E-02
111	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.62E-02
112	GO:0010227: floral organ abscission	1.62E-02
113	GO:0016117: carotenoid biosynthetic process	1.82E-02
114	GO:0042335: cuticle development	1.93E-02
115	GO:0042391: regulation of membrane potential	1.93E-02
116	GO:0080022: primary root development	1.93E-02
117	GO:0006662: glycerol ether metabolic process	2.03E-02
118	GO:0008152: metabolic process	2.06E-02
119	GO:0007018: microtubule-based movement	2.14E-02
120	GO:0009646: response to absence of light	2.14E-02
121	GO:0009790: embryo development	2.17E-02
122	GO:0000302: response to reactive oxygen species	2.36E-02
123	GO:0010090: trichome morphogenesis	2.59E-02
124	GO:0009451: RNA modification	2.62E-02
125	GO:0009828: plant-type cell wall loosening	2.71E-02
126	GO:0071805: potassium ion transmembrane transport	2.83E-02
127	GO:0001666: response to hypoxia	3.07E-02
128	GO:0042128: nitrate assimilation	3.32E-02
129	GO:0009817: defense response to fungus, incompatible interaction	3.71E-02
130	GO:0048481: plant ovule development	3.71E-02
131	GO:0010218: response to far red light	3.97E-02
132	GO:0009631: cold acclimation	4.11E-02
133	GO:0009853: photorespiration	4.39E-02
134	GO:0006839: mitochondrial transport	4.81E-02
135	GO:0030001: metal ion transport	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0051721: protein phosphatase 2A binding	0.00E+00
2	GO:0042903: tubulin deacetylase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0043014: alpha-tubulin binding	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0046608: carotenoid isomerase activity	0.00E+00
12	GO:0019843: rRNA binding	2.00E-11
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.18E-10
14	GO:0016851: magnesium chelatase activity	7.98E-08
15	GO:0005528: FK506 binding	1.92E-06
16	GO:0003735: structural constituent of ribosome	8.96E-05
17	GO:0004321: fatty-acyl-CoA synthase activity	2.39E-04
18	GO:0005080: protein kinase C binding	2.39E-04
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.39E-04
20	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.39E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.39E-04
22	GO:0016168: chlorophyll binding	4.42E-04
23	GO:0008047: enzyme activator activity	4.48E-04
24	GO:0016630: protochlorophyllide reductase activity	5.29E-04
25	GO:0047746: chlorophyllase activity	5.29E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	5.29E-04
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.29E-04
28	GO:0008266: poly(U) RNA binding	7.56E-04
29	GO:0002161: aminoacyl-tRNA editing activity	8.60E-04
30	GO:0004751: ribose-5-phosphate isomerase activity	8.60E-04
31	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.60E-04
32	GO:0008864: formyltetrahydrofolate deformylase activity	8.60E-04
33	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.60E-04
34	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.60E-04
35	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.60E-04
36	GO:0031409: pigment binding	9.38E-04
37	GO:0048487: beta-tubulin binding	1.23E-03
38	GO:0016149: translation release factor activity, codon specific	1.23E-03
39	GO:0052656: L-isoleucine transaminase activity	1.23E-03
40	GO:0043023: ribosomal large subunit binding	1.23E-03
41	GO:0052654: L-leucine transaminase activity	1.23E-03
42	GO:0008097: 5S rRNA binding	1.23E-03
43	GO:0052655: L-valine transaminase activity	1.23E-03
44	GO:0001872: (1->3)-beta-D-glucan binding	1.23E-03
45	GO:0016987: sigma factor activity	1.64E-03
46	GO:0004084: branched-chain-amino-acid transaminase activity	1.64E-03
47	GO:0043495: protein anchor	1.64E-03
48	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.64E-03
49	GO:0004659: prenyltransferase activity	1.64E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	1.64E-03
51	GO:0001053: plastid sigma factor activity	1.64E-03
52	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.64E-03
53	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.64E-03
54	GO:0004045: aminoacyl-tRNA hydrolase activity	1.64E-03
55	GO:0016788: hydrolase activity, acting on ester bonds	1.75E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.09E-03
57	GO:0003959: NADPH dehydrogenase activity	2.09E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-03
59	GO:0004130: cytochrome-c peroxidase activity	2.57E-03
60	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.57E-03
61	GO:0016688: L-ascorbate peroxidase activity	2.57E-03
62	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.57E-03
63	GO:0004332: fructose-bisphosphate aldolase activity	2.57E-03
64	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.85E-03
65	GO:0005242: inward rectifier potassium channel activity	3.09E-03
66	GO:0051920: peroxiredoxin activity	3.09E-03
67	GO:0019899: enzyme binding	3.64E-03
68	GO:0008235: metalloexopeptidase activity	3.64E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	4.23E-03
70	GO:0043022: ribosome binding	4.23E-03
71	GO:0016209: antioxidant activity	4.23E-03
72	GO:0008312: 7S RNA binding	4.23E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.84E-03
74	GO:0003747: translation release factor activity	5.48E-03
75	GO:0016207: 4-coumarate-CoA ligase activity	5.48E-03
76	GO:0046872: metal ion binding	5.62E-03
77	GO:0005381: iron ion transmembrane transporter activity	6.15E-03
78	GO:0005384: manganese ion transmembrane transporter activity	6.15E-03
79	GO:0047617: acyl-CoA hydrolase activity	6.15E-03
80	GO:0042802: identical protein binding	6.58E-03
81	GO:0015386: potassium:proton antiporter activity	7.58E-03
82	GO:0004177: aminopeptidase activity	7.58E-03
83	GO:0000049: tRNA binding	8.33E-03
84	GO:0008081: phosphoric diester hydrolase activity	9.11E-03
85	GO:0015095: magnesium ion transmembrane transporter activity	9.11E-03
86	GO:0031072: heat shock protein binding	9.11E-03
87	GO:0003723: RNA binding	1.17E-02
88	GO:0016787: hydrolase activity	1.19E-02
89	GO:0051536: iron-sulfur cluster binding	1.25E-02
90	GO:0004407: histone deacetylase activity	1.25E-02
91	GO:0015079: potassium ion transmembrane transporter activity	1.34E-02
92	GO:0051087: chaperone binding	1.34E-02
93	GO:0016746: transferase activity, transferring acyl groups	1.52E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.62E-02
95	GO:0047134: protein-disulfide reductase activity	1.82E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	1.82E-02
97	GO:0030551: cyclic nucleotide binding	1.93E-02
98	GO:0005249: voltage-gated potassium channel activity	1.93E-02
99	GO:0004519: endonuclease activity	2.03E-02
100	GO:0008080: N-acetyltransferase activity	2.03E-02
101	GO:0050662: coenzyme binding	2.14E-02
102	GO:0004518: nuclease activity	2.47E-02
103	GO:0005509: calcium ion binding	2.61E-02
104	GO:0008017: microtubule binding	2.68E-02
105	GO:0016791: phosphatase activity	2.71E-02
106	GO:0016597: amino acid binding	2.95E-02
107	GO:0003824: catalytic activity	3.36E-02
108	GO:0004721: phosphoprotein phosphatase activity	3.45E-02
109	GO:0030247: polysaccharide binding	3.45E-02
110	GO:0008236: serine-type peptidase activity	3.58E-02
111	GO:0008168: methyltransferase activity	3.81E-02
112	GO:0004601: peroxidase activity	3.96E-02
113	GO:0016491: oxidoreductase activity	4.37E-02
114	GO:0051539: 4 iron, 4 sulfur cluster binding	4.81E-02
115	GO:0050661: NADP binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.03E-65
3	GO:0009570: chloroplast stroma	3.02E-35
4	GO:0009535: chloroplast thylakoid membrane	2.59E-25
5	GO:0009534: chloroplast thylakoid	1.18E-21
6	GO:0009941: chloroplast envelope	6.78E-21
7	GO:0009579: thylakoid	2.61E-20
8	GO:0009543: chloroplast thylakoid lumen	2.16E-19
9	GO:0031977: thylakoid lumen	3.83E-17
10	GO:0010007: magnesium chelatase complex	1.64E-08
11	GO:0005840: ribosome	9.91E-07
12	GO:0009654: photosystem II oxygen evolving complex	2.42E-06
13	GO:0031969: chloroplast membrane	8.76E-06
14	GO:0019898: extrinsic component of membrane	1.23E-05
15	GO:0042651: thylakoid membrane	7.83E-05
16	GO:0009782: photosystem I antenna complex	2.39E-04
17	GO:0009547: plastid ribosome	2.39E-04
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.67E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.23E-04
20	GO:0080085: signal recognition particle, chloroplast targeting	5.29E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.29E-04
22	GO:0030076: light-harvesting complex	8.45E-04
23	GO:0009523: photosystem II	2.34E-03
24	GO:0010287: plastoglobule	3.01E-03
25	GO:0030529: intracellular ribonucleoprotein complex	3.61E-03
26	GO:0046658: anchored component of plasma membrane	6.93E-03
27	GO:0000311: plastid large ribosomal subunit	8.33E-03
28	GO:0032040: small-subunit processome	8.33E-03
29	GO:0009508: plastid chromosome	9.11E-03
30	GO:0030095: chloroplast photosystem II	9.92E-03
31	GO:0000312: plastid small ribosomal subunit	9.92E-03
32	GO:0005874: microtubule	1.06E-02
33	GO:0016020: membrane	1.13E-02
34	GO:0009536: plastid	1.29E-02
35	GO:0015935: small ribosomal subunit	1.43E-02
36	GO:0009532: plastid stroma	1.43E-02
37	GO:0005871: kinesin complex	1.82E-02
38	GO:0043231: intracellular membrane-bounded organelle	2.06E-02
39	GO:0009522: photosystem I	2.14E-02
40	GO:0009295: nucleoid	2.83E-02
41	GO:0010319: stromule	2.83E-02
42	GO:0015934: large ribosomal subunit	4.11E-02
43	GO:0005777: peroxisome	4.42E-02