co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G14870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0006066: alcohol metabolic process	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0042820: vitamin B6 catabolic process	0.00E+00
10	GO:0042493: response to drug	0.00E+00
11	GO:0015979: photosynthesis	3.15E-11
12	GO:0009773: photosynthetic electron transport in photosystem I	2.14E-10
13	GO:0009735: response to cytokinin	3.04E-09
14	GO:0042254: ribosome biogenesis	3.41E-06
15	GO:0010196: nonphotochemical quenching	8.43E-06
16	GO:0090391: granum assembly	2.08E-05
17	GO:0006412: translation	8.05E-05
18	GO:0010027: thylakoid membrane organization	9.68E-05
19	GO:0015995: chlorophyll biosynthetic process	1.30E-04
20	GO:0042371: vitamin K biosynthetic process	3.63E-04
21	GO:0090548: response to nitrate starvation	3.63E-04
22	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.63E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	3.63E-04
24	GO:0009443: pyridoxal 5'-phosphate salvage	3.63E-04
25	GO:1902025: nitrate import	3.63E-04
26	GO:0043489: RNA stabilization	3.63E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.63E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	3.63E-04
29	GO:0042335: cuticle development	3.84E-04
30	GO:0006353: DNA-templated transcription, termination	4.01E-04
31	GO:0032544: plastid translation	4.91E-04
32	GO:0016042: lipid catabolic process	6.85E-04
33	GO:0010205: photoinhibition	6.94E-04
34	GO:0001736: establishment of planar polarity	7.89E-04
35	GO:0010024: phytochromobilin biosynthetic process	7.89E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.89E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	7.89E-04
38	GO:0010115: regulation of abscisic acid biosynthetic process	7.89E-04
39	GO:0034755: iron ion transmembrane transport	7.89E-04
40	GO:0009658: chloroplast organization	9.86E-04
41	GO:0016024: CDP-diacylglycerol biosynthetic process	1.06E-03
42	GO:0018298: protein-chromophore linkage	1.24E-03
43	GO:0015714: phosphoenolpyruvate transport	1.28E-03
44	GO:0015675: nickel cation transport	1.28E-03
45	GO:0006788: heme oxidation	1.28E-03
46	GO:0006518: peptide metabolic process	1.28E-03
47	GO:0010143: cutin biosynthetic process	1.36E-03
48	GO:0010207: photosystem II assembly	1.36E-03
49	GO:0006636: unsaturated fatty acid biosynthetic process	1.69E-03
50	GO:0006986: response to unfolded protein	1.84E-03
51	GO:0071484: cellular response to light intensity	1.84E-03
52	GO:0051085: chaperone mediated protein folding requiring cofactor	1.84E-03
53	GO:0009152: purine ribonucleotide biosynthetic process	1.84E-03
54	GO:0046653: tetrahydrofolate metabolic process	1.84E-03
55	GO:0010239: chloroplast mRNA processing	1.84E-03
56	GO:0080170: hydrogen peroxide transmembrane transport	1.84E-03
57	GO:0009650: UV protection	1.84E-03
58	GO:1901332: negative regulation of lateral root development	1.84E-03
59	GO:0045727: positive regulation of translation	2.47E-03
60	GO:0015994: chlorophyll metabolic process	2.47E-03
61	GO:0030104: water homeostasis	2.47E-03
62	GO:0015713: phosphoglycerate transport	2.47E-03
63	GO:0006461: protein complex assembly	3.16E-03
64	GO:0080110: sporopollenin biosynthetic process	3.16E-03
65	GO:0006564: L-serine biosynthetic process	3.16E-03
66	GO:0006364: rRNA processing	3.37E-03
67	GO:0006561: proline biosynthetic process	3.91E-03
68	GO:0006751: glutathione catabolic process	3.91E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.91E-03
70	GO:0009913: epidermal cell differentiation	3.91E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	3.91E-03
72	GO:0010337: regulation of salicylic acid metabolic process	3.91E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	4.71E-03
74	GO:1901259: chloroplast rRNA processing	4.71E-03
75	GO:0017148: negative regulation of translation	4.71E-03
76	GO:0006694: steroid biosynthetic process	4.71E-03
77	GO:0009395: phospholipid catabolic process	5.56E-03
78	GO:0009772: photosynthetic electron transport in photosystem II	5.56E-03
79	GO:1900057: positive regulation of leaf senescence	5.56E-03
80	GO:0010444: guard mother cell differentiation	5.56E-03
81	GO:0006400: tRNA modification	5.56E-03
82	GO:0031540: regulation of anthocyanin biosynthetic process	6.46E-03
83	GO:0008610: lipid biosynthetic process	6.46E-03
84	GO:0030091: protein repair	6.46E-03
85	GO:0042255: ribosome assembly	6.46E-03
86	GO:0006810: transport	6.85E-03
87	GO:0009808: lignin metabolic process	7.41E-03
88	GO:0009657: plastid organization	7.41E-03
89	GO:0009416: response to light stimulus	7.81E-03
90	GO:0055114: oxidation-reduction process	8.26E-03
91	GO:0010206: photosystem II repair	8.41E-03
92	GO:0000373: Group II intron splicing	8.41E-03
93	GO:0006869: lipid transport	9.14E-03
94	GO:0010311: lateral root formation	9.14E-03
95	GO:0009638: phototropism	9.46E-03
96	GO:0009631: cold acclimation	1.01E-02
97	GO:0032259: methylation	1.02E-02
98	GO:0009688: abscisic acid biosynthetic process	1.05E-02
99	GO:0048829: root cap development	1.05E-02
100	GO:0006032: chitin catabolic process	1.05E-02
101	GO:0045490: pectin catabolic process	1.06E-02
102	GO:0034599: cellular response to oxidative stress	1.16E-02
103	GO:0048765: root hair cell differentiation	1.17E-02
104	GO:0000038: very long-chain fatty acid metabolic process	1.17E-02
105	GO:0043085: positive regulation of catalytic activity	1.17E-02
106	GO:0006879: cellular iron ion homeostasis	1.17E-02
107	GO:0009750: response to fructose	1.17E-02
108	GO:0018119: peptidyl-cysteine S-nitrosylation	1.17E-02
109	GO:0030001: metal ion transport	1.26E-02
110	GO:0010229: inflorescence development	1.41E-02
111	GO:0009725: response to hormone	1.41E-02
112	GO:0009785: blue light signaling pathway	1.41E-02
113	GO:0010628: positive regulation of gene expression	1.41E-02
114	GO:0006006: glucose metabolic process	1.41E-02
115	GO:0048467: gynoecium development	1.53E-02
116	GO:0019253: reductive pentose-phosphate cycle	1.53E-02
117	GO:0010053: root epidermal cell differentiation	1.66E-02
118	GO:0009825: multidimensional cell growth	1.66E-02
119	GO:0010167: response to nitrate	1.66E-02
120	GO:0071732: cellular response to nitric oxide	1.66E-02
121	GO:0019762: glucosinolate catabolic process	1.80E-02
122	GO:0010025: wax biosynthetic process	1.80E-02
123	GO:0042023: DNA endoreduplication	1.80E-02
124	GO:0000027: ribosomal large subunit assembly	1.93E-02
125	GO:0009809: lignin biosynthetic process	1.93E-02
126	GO:0051017: actin filament bundle assembly	1.93E-02
127	GO:0019953: sexual reproduction	2.07E-02
128	GO:0007017: microtubule-based process	2.07E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	2.07E-02
130	GO:0016998: cell wall macromolecule catabolic process	2.22E-02
131	GO:0031408: oxylipin biosynthetic process	2.22E-02
132	GO:0003333: amino acid transmembrane transport	2.22E-02
133	GO:0030245: cellulose catabolic process	2.37E-02
134	GO:0016226: iron-sulfur cluster assembly	2.37E-02
135	GO:0080167: response to karrikin	2.43E-02
136	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.52E-02
137	GO:0009411: response to UV	2.52E-02
138	GO:0071369: cellular response to ethylene stimulus	2.52E-02
139	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.53E-02
140	GO:0010584: pollen exine formation	2.67E-02
141	GO:0042127: regulation of cell proliferation	2.67E-02
142	GO:0009306: protein secretion	2.67E-02
143	GO:0080022: primary root development	2.99E-02
144	GO:0008033: tRNA processing	2.99E-02
145	GO:0034220: ion transmembrane transport	2.99E-02
146	GO:0010182: sugar mediated signaling pathway	3.16E-02
147	GO:0009958: positive gravitropism	3.16E-02
148	GO:0006662: glycerol ether metabolic process	3.16E-02
149	GO:0015986: ATP synthesis coupled proton transport	3.32E-02
150	GO:0016132: brassinosteroid biosynthetic process	3.67E-02
151	GO:0000302: response to reactive oxygen species	3.67E-02
152	GO:0032502: developmental process	3.84E-02
153	GO:0016032: viral process	3.84E-02
154	GO:0042744: hydrogen peroxide catabolic process	3.91E-02
155	GO:0009408: response to heat	3.94E-02
156	GO:0071281: cellular response to iron ion	4.02E-02
157	GO:0009828: plant-type cell wall loosening	4.20E-02
158	GO:0019760: glucosinolate metabolic process	4.20E-02
159	GO:0010252: auxin homeostasis	4.20E-02
160	GO:0006633: fatty acid biosynthetic process	4.31E-02
161	GO:0009409: response to cold	4.32E-02
162	GO:0008152: metabolic process	4.44E-02
163	GO:0007623: circadian rhythm	4.73E-02
164	GO:0009451: RNA modification	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
7	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
11	GO:0019843: rRNA binding	6.89E-13
12	GO:0005528: FK506 binding	1.72E-07
13	GO:0003735: structural constituent of ribosome	2.31E-06
14	GO:0016788: hydrolase activity, acting on ester bonds	3.19E-05
15	GO:0001872: (1->3)-beta-D-glucan binding	4.58E-05
16	GO:0016851: magnesium chelatase activity	4.58E-05
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.44E-05
18	GO:0052689: carboxylic ester hydrolase activity	7.46E-05
19	GO:0008266: poly(U) RNA binding	1.00E-04
20	GO:0030570: pectate lyase activity	2.77E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.63E-04
22	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.63E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.63E-04
24	GO:0004033: aldo-keto reductase (NADP) activity	4.01E-04
25	GO:0047746: chlorophyllase activity	7.89E-04
26	GO:0003839: gamma-glutamylcyclotransferase activity	7.89E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	7.89E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.89E-04
29	GO:0016630: protochlorophyllide reductase activity	7.89E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.89E-04
31	GO:0015099: nickel cation transmembrane transporter activity	7.89E-04
32	GO:0016168: chlorophyll binding	9.51E-04
33	GO:0016746: transferase activity, transferring acyl groups	1.02E-03
34	GO:0030247: polysaccharide binding	1.09E-03
35	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.28E-03
36	GO:0070402: NADPH binding	1.28E-03
37	GO:0008864: formyltetrahydrofolate deformylase activity	1.28E-03
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.28E-03
39	GO:0050734: hydroxycinnamoyltransferase activity	1.28E-03
40	GO:0090729: toxin activity	1.28E-03
41	GO:0043023: ribosomal large subunit binding	1.84E-03
42	GO:0016491: oxidoreductase activity	1.84E-03
43	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.47E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	2.47E-03
45	GO:0010011: auxin binding	2.47E-03
46	GO:0102490: 8-oxo-dGTP phosphohydrolase activity	2.47E-03
47	GO:0010328: auxin influx transmembrane transporter activity	2.47E-03
48	GO:0043495: protein anchor	2.47E-03
49	GO:0042277: peptide binding	2.47E-03
50	GO:0004392: heme oxygenase (decyclizing) activity	2.47E-03
51	GO:0022891: substrate-specific transmembrane transporter activity	2.71E-03
52	GO:0003959: NADPH dehydrogenase activity	3.16E-03
53	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.91E-03
54	GO:0004130: cytochrome-c peroxidase activity	3.91E-03
55	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.91E-03
56	GO:0016688: L-ascorbate peroxidase activity	3.91E-03
57	GO:0050662: coenzyme binding	4.00E-03
58	GO:0008168: methyltransferase activity	4.11E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.71E-03
60	GO:0004017: adenylate kinase activity	4.71E-03
61	GO:0019899: enzyme binding	5.56E-03
62	GO:0016597: amino acid binding	6.28E-03
63	GO:0052747: sinapyl alcohol dehydrogenase activity	6.46E-03
64	GO:0043022: ribosome binding	6.46E-03
65	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.41E-03
66	GO:0016829: lyase activity	7.79E-03
67	GO:0005381: iron ion transmembrane transporter activity	9.46E-03
68	GO:0030234: enzyme regulator activity	1.05E-02
69	GO:0004568: chitinase activity	1.05E-02
70	GO:0008047: enzyme activator activity	1.05E-02
71	GO:0009055: electron carrier activity	1.22E-02
72	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.29E-02
73	GO:0004565: beta-galactosidase activity	1.41E-02
74	GO:0004022: alcohol dehydrogenase (NAD) activity	1.41E-02
75	GO:0008146: sulfotransferase activity	1.66E-02
76	GO:0051287: NAD binding	1.73E-02
77	GO:0031409: pigment binding	1.80E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.80E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.80E-02
80	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.80E-02
81	GO:0051536: iron-sulfur cluster binding	1.93E-02
82	GO:0003690: double-stranded DNA binding	2.00E-02
83	GO:0051087: chaperone binding	2.07E-02
84	GO:0004176: ATP-dependent peptidase activity	2.22E-02
85	GO:0008810: cellulase activity	2.52E-02
86	GO:0003727: single-stranded RNA binding	2.67E-02
87	GO:0047134: protein-disulfide reductase activity	2.83E-02
88	GO:0008080: N-acetyltransferase activity	3.16E-02
89	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.16E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	3.32E-02
91	GO:0004872: receptor activity	3.49E-02
92	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.87E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.02E-02
94	GO:0051015: actin filament binding	4.02E-02
95	GO:0016791: phosphatase activity	4.20E-02
96	GO:0005200: structural constituent of cytoskeleton	4.39E-02
97	GO:0015250: water channel activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	4.79E-41
4	GO:0009570: chloroplast stroma	4.79E-25
5	GO:0009535: chloroplast thylakoid membrane	1.02E-23
6	GO:0009941: chloroplast envelope	3.06E-23
7	GO:0009579: thylakoid	2.09E-21
8	GO:0009534: chloroplast thylakoid	1.54E-17
9	GO:0009543: chloroplast thylakoid lumen	7.51E-16
10	GO:0031977: thylakoid lumen	2.90E-12
11	GO:0005840: ribosome	6.71E-10
12	GO:0030095: chloroplast photosystem II	3.42E-06
13	GO:0010007: magnesium chelatase complex	2.08E-05
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.50E-05
15	GO:0009523: photosystem II	4.19E-05
16	GO:0009654: photosystem II oxygen evolving complex	1.89E-04
17	GO:0031969: chloroplast membrane	3.26E-04
18	GO:0009547: plastid ribosome	3.63E-04
19	GO:0043674: columella	3.63E-04
20	GO:0019898: extrinsic component of membrane	5.10E-04
21	GO:0046658: anchored component of plasma membrane	7.51E-04
22	GO:0030093: chloroplast photosystem I	7.89E-04
23	GO:0031225: anchored component of membrane	1.68E-03
24	GO:0015630: microtubule cytoskeleton	1.84E-03
25	GO:0042651: thylakoid membrane	2.07E-03
26	GO:0048046: apoplast	3.34E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.91E-03
28	GO:0009986: cell surface	5.56E-03
29	GO:0009533: chloroplast stromal thylakoid	5.56E-03
30	GO:0042807: central vacuole	5.56E-03
31	GO:0009295: nucleoid	5.92E-03
32	GO:0010287: plastoglobule	6.57E-03
33	GO:0030529: intracellular ribonucleoprotein complex	6.65E-03
34	GO:0016020: membrane	7.14E-03
35	GO:0008180: COP9 signalosome	8.41E-03
36	GO:0005618: cell wall	1.02E-02
37	GO:0000311: plastid large ribosomal subunit	1.29E-02
38	GO:0009508: plastid chromosome	1.41E-02
39	GO:0030076: light-harvesting complex	1.66E-02
40	GO:0015629: actin cytoskeleton	2.52E-02
41	GO:0016021: integral component of membrane	2.96E-02
42	GO:0009522: photosystem I	3.32E-02
43	GO:0010319: stromule	4.39E-02