Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G14230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043171: peptide catabolic process0.00E+00
2GO:0010378: temperature compensation of the circadian clock0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0000390: spliceosomal complex disassembly0.00E+00
5GO:0009768: photosynthesis, light harvesting in photosystem I2.63E-11
6GO:0018298: protein-chromophore linkage8.04E-09
7GO:0009645: response to low light intensity stimulus5.63E-06
8GO:0009769: photosynthesis, light harvesting in photosystem II5.63E-06
9GO:0010218: response to far red light8.31E-06
10GO:0009409: response to cold1.85E-05
11GO:0007623: circadian rhythm3.93E-05
12GO:0010600: regulation of auxin biosynthetic process6.18E-05
13GO:0009416: response to light stimulus7.79E-05
14GO:0043097: pyrimidine nucleoside salvage9.74E-05
15GO:0000380: alternative mRNA splicing, via spliceosome9.74E-05
16GO:0006206: pyrimidine nucleobase metabolic process1.41E-04
17GO:0009637: response to blue light1.57E-04
18GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.93E-04
19GO:0042542: response to hydrogen peroxide2.27E-04
20GO:0010114: response to red light2.43E-04
21GO:0015979: photosynthesis2.60E-04
22GO:0009644: response to high light intensity2.77E-04
23GO:1902265: abscisic acid homeostasis3.09E-04
24GO:0015812: gamma-aminobutyric acid transport3.09E-04
25GO:0032958: inositol phosphate biosynthetic process3.09E-04
26GO:0034472: snRNA 3'-end processing3.09E-04
27GO:0010496: intercellular transport3.09E-04
28GO:1990641: response to iron ion starvation3.09E-04
29GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.09E-04
30GO:0010928: regulation of auxin mediated signaling pathway3.17E-04
31GO:0009737: response to abscisic acid3.84E-04
32GO:0006101: citrate metabolic process6.76E-04
33GO:0051170: nuclear import6.76E-04
34GO:0030003: cellular cation homeostasis6.76E-04
35GO:0015914: phospholipid transport6.76E-04
36GO:0006611: protein export from nucleus6.76E-04
37GO:0090057: root radial pattern formation6.76E-04
38GO:0009817: defense response to fungus, incompatible interaction9.23E-04
39GO:0080167: response to karrikin9.49E-04
40GO:0006954: inflammatory response1.10E-03
41GO:0006598: polyamine catabolic process1.10E-03
42GO:0042780: tRNA 3'-end processing1.10E-03
43GO:0000055: ribosomal large subunit export from nucleus1.10E-03
44GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.10E-03
45GO:0042256: mature ribosome assembly1.10E-03
46GO:1902448: positive regulation of shade avoidance1.10E-03
47GO:0042344: indole glucosinolate catabolic process1.10E-03
48GO:0009651: response to salt stress1.38E-03
49GO:0015749: monosaccharide transport1.57E-03
50GO:1901332: negative regulation of lateral root development1.57E-03
51GO:0006020: inositol metabolic process1.57E-03
52GO:0010601: positive regulation of auxin biosynthetic process1.57E-03
53GO:0044211: CTP salvage1.57E-03
54GO:0048511: rhythmic process1.80E-03
55GO:0008643: carbohydrate transport1.89E-03
56GO:0010017: red or far-red light signaling pathway1.97E-03
57GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain2.11E-03
58GO:0044206: UMP salvage2.11E-03
59GO:0006646: phosphatidylethanolamine biosynthetic process2.11E-03
60GO:0009687: abscisic acid metabolic process2.11E-03
61GO:0015743: malate transport2.11E-03
62GO:0009765: photosynthesis, light harvesting2.11E-03
63GO:0030104: water homeostasis2.11E-03
64GO:0071215: cellular response to abscisic acid stimulus2.15E-03
65GO:0009585: red, far-red light phototransduction2.49E-03
66GO:0016926: protein desumoylation2.69E-03
67GO:0006656: phosphatidylcholine biosynthetic process2.69E-03
68GO:0007029: endoplasmic reticulum organization2.69E-03
69GO:0048578: positive regulation of long-day photoperiodism, flowering2.69E-03
70GO:0006814: sodium ion transport3.16E-03
71GO:0042752: regulation of circadian rhythm3.16E-03
72GO:0000741: karyogamy3.32E-03
73GO:0009635: response to herbicide3.32E-03
74GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.32E-03
75GO:0042732: D-xylose metabolic process3.32E-03
76GO:0031053: primary miRNA processing3.32E-03
77GO:0045040: protein import into mitochondrial outer membrane3.32E-03
78GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.00E-03
79GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.00E-03
80GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.00E-03
81GO:0010286: heat acclimation4.67E-03
82GO:0048437: floral organ development4.72E-03
83GO:0010038: response to metal ion4.72E-03
84GO:0010044: response to aluminum ion4.72E-03
85GO:0010161: red light signaling pathway4.72E-03
86GO:0009414: response to water deprivation5.41E-03
87GO:0009819: drought recovery5.48E-03
88GO:0009415: response to water5.48E-03
89GO:0010078: maintenance of root meristem identity5.48E-03
90GO:0009704: de-etiolation5.48E-03
91GO:0032508: DNA duplex unwinding5.48E-03
92GO:0006102: isocitrate metabolic process5.48E-03
93GO:0009061: anaerobic respiration5.48E-03
94GO:0035556: intracellular signal transduction5.66E-03
95GO:0048573: photoperiodism, flowering6.18E-03
96GO:0006950: response to stress6.18E-03
97GO:0001510: RNA methylation6.28E-03
98GO:0010099: regulation of photomorphogenesis6.28E-03
99GO:0009827: plant-type cell wall modification6.28E-03
100GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.12E-03
101GO:0090333: regulation of stomatal closure7.12E-03
102GO:0046916: cellular transition metal ion homeostasis7.12E-03
103GO:0006098: pentose-phosphate shunt7.12E-03
104GO:0000160: phosphorelay signal transduction system7.20E-03
105GO:0006811: ion transport7.56E-03
106GO:0009631: cold acclimation7.93E-03
107GO:0010043: response to zinc ion7.93E-03
108GO:0010119: regulation of stomatal movement7.93E-03
109GO:0048354: mucilage biosynthetic process involved in seed coat development8.01E-03
110GO:0030042: actin filament depolymerization8.01E-03
111GO:0010228: vegetative to reproductive phase transition of meristem8.32E-03
112GO:0007165: signal transduction8.67E-03
113GO:0045087: innate immune response8.69E-03
114GO:0006511: ubiquitin-dependent protein catabolic process8.79E-03
115GO:0006995: cellular response to nitrogen starvation8.92E-03
116GO:0009641: shade avoidance8.92E-03
117GO:0055062: phosphate ion homeostasis8.92E-03
118GO:0009970: cellular response to sulfate starvation8.92E-03
119GO:0010468: regulation of gene expression9.83E-03
120GO:0009682: induced systemic resistance9.88E-03
121GO:0052544: defense response by callose deposition in cell wall9.88E-03
122GO:0006816: calcium ion transport9.88E-03
123GO:0016925: protein sumoylation1.09E-02
124GO:0009640: photomorphogenesis1.12E-02
125GO:0051707: response to other organism1.12E-02
126GO:0006626: protein targeting to mitochondrion1.19E-02
127GO:0009718: anthocyanin-containing compound biosynthetic process1.19E-02
128GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.19E-02
129GO:2000012: regulation of auxin polar transport1.19E-02
130GO:0007034: vacuolar transport1.30E-02
131GO:0007015: actin filament organization1.30E-02
132GO:0009266: response to temperature stimulus1.30E-02
133GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.36E-02
134GO:0019853: L-ascorbic acid biosynthetic process1.40E-02
135GO:0090351: seedling development1.40E-02
136GO:0010030: positive regulation of seed germination1.40E-02
137GO:0007030: Golgi organization1.40E-02
138GO:0006970: response to osmotic stress1.50E-02
139GO:0009735: response to cytokinin1.58E-02
140GO:0006406: mRNA export from nucleus1.63E-02
141GO:0009738: abscisic acid-activated signaling pathway1.72E-02
142GO:0009695: jasmonic acid biosynthetic process1.75E-02
143GO:0016575: histone deacetylation1.75E-02
144GO:0006874: cellular calcium ion homeostasis1.75E-02
145GO:0003333: amino acid transmembrane transport1.87E-02
146GO:0009269: response to desiccation1.87E-02
147GO:0016567: protein ubiquitination1.93E-02
148GO:0044550: secondary metabolite biosynthetic process2.00E-02
149GO:0019748: secondary metabolic process2.00E-02
150GO:0009693: ethylene biosynthetic process2.12E-02
151GO:0006012: galactose metabolic process2.12E-02
152GO:0009561: megagametogenesis2.25E-02
153GO:0045492: xylan biosynthetic process2.25E-02
154GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.39E-02
155GO:0000398: mRNA splicing, via spliceosome2.50E-02
156GO:0080022: primary root development2.52E-02
157GO:0042391: regulation of membrane potential2.52E-02
158GO:0010501: RNA secondary structure unwinding2.52E-02
159GO:0000413: protein peptidyl-prolyl isomerization2.52E-02
160GO:0042631: cellular response to water deprivation2.52E-02
161GO:0055085: transmembrane transport2.58E-02
162GO:0010197: polar nucleus fusion2.66E-02
163GO:0046323: glucose import2.66E-02
164GO:0048544: recognition of pollen2.80E-02
165GO:0009058: biosynthetic process2.86E-02
166GO:0006355: regulation of transcription, DNA-templated2.90E-02
167GO:0008654: phospholipid biosynthetic process2.95E-02
168GO:0009556: microsporogenesis2.95E-02
169GO:0000302: response to reactive oxygen species3.09E-02
170GO:0006635: fatty acid beta-oxidation3.09E-02
171GO:1901657: glycosyl compound metabolic process3.39E-02
172GO:0019760: glucosinolate metabolic process3.55E-02
173GO:0001666: response to hypoxia4.02E-02
174GO:0009911: positive regulation of flower development4.02E-02
175GO:0010029: regulation of seed germination4.18E-02
176GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.18E-02
177GO:0009617: response to bacterium4.45E-02
178GO:0015995: chlorophyll biosynthetic process4.51E-02
179GO:0048481: plant ovule development4.85E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
3GO:0004567: beta-mannosidase activity0.00E+00
4GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
5GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
6GO:0047668: amygdalin beta-glucosidase activity0.00E+00
7GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
8GO:1990446: U1 snRNP binding0.00E+00
9GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
10GO:0005272: sodium channel activity0.00E+00
11GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
12GO:0010349: L-galactose dehydrogenase activity0.00E+00
13GO:0009045: xylose isomerase activity0.00E+00
14GO:0031409: pigment binding1.11E-11
15GO:0016168: chlorophyll binding3.60E-09
16GO:0005253: anion channel activity6.18E-05
17GO:0004849: uridine kinase activity1.93E-04
18GO:0000828: inositol hexakisphosphate kinase activity3.09E-04
19GO:0070006: metalloaminopeptidase activity3.09E-04
20GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.09E-04
21GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.09E-04
22GO:0009679: hexose:proton symporter activity3.09E-04
23GO:0000829: inositol heptakisphosphate kinase activity3.09E-04
24GO:0010013: N-1-naphthylphthalamic acid binding3.09E-04
25GO:0080079: cellobiose glucosidase activity3.09E-04
26GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.09E-04
27GO:0046870: cadmium ion binding3.09E-04
28GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.76E-04
29GO:0015180: L-alanine transmembrane transporter activity6.76E-04
30GO:0001047: core promoter binding6.76E-04
31GO:0032791: lead ion binding6.76E-04
32GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters6.76E-04
33GO:0004609: phosphatidylserine decarboxylase activity6.76E-04
34GO:0003994: aconitate hydratase activity6.76E-04
35GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity6.76E-04
36GO:0004839: ubiquitin activating enzyme activity6.76E-04
37GO:0004177: aminopeptidase activity7.44E-04
38GO:0005515: protein binding7.69E-04
39GO:0042781: 3'-tRNA processing endoribonuclease activity1.10E-03
40GO:0004096: catalase activity1.10E-03
41GO:0046592: polyamine oxidase activity1.10E-03
42GO:0019948: SUMO activating enzyme activity1.10E-03
43GO:0017150: tRNA dihydrouridine synthase activity1.10E-03
44GO:0015181: arginine transmembrane transporter activity1.57E-03
45GO:0043023: ribosomal large subunit binding1.57E-03
46GO:0004165: dodecenoyl-CoA delta-isomerase activity1.57E-03
47GO:0004300: enoyl-CoA hydratase activity1.57E-03
48GO:0015189: L-lysine transmembrane transporter activity1.57E-03
49GO:0048027: mRNA 5'-UTR binding1.57E-03
50GO:0004707: MAP kinase activity1.80E-03
51GO:0005313: L-glutamate transmembrane transporter activity2.11E-03
52GO:0008526: phosphatidylinositol transporter activity2.11E-03
53GO:0042277: peptide binding2.11E-03
54GO:0004845: uracil phosphoribosyltransferase activity2.11E-03
55GO:0004737: pyruvate decarboxylase activity2.11E-03
56GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.69E-03
57GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.69E-03
58GO:0016929: SUMO-specific protease activity2.69E-03
59GO:0010294: abscisic acid glucosyltransferase activity2.69E-03
60GO:0015145: monosaccharide transmembrane transporter activity2.69E-03
61GO:0008641: small protein activating enzyme activity2.69E-03
62GO:0046872: metal ion binding3.31E-03
63GO:0019137: thioglucosidase activity3.32E-03
64GO:0015562: efflux transmembrane transporter activity3.32E-03
65GO:0000293: ferric-chelate reductase activity3.32E-03
66GO:0005247: voltage-gated chloride channel activity3.32E-03
67GO:0030976: thiamine pyrophosphate binding3.32E-03
68GO:0004629: phospholipase C activity3.32E-03
69GO:0070300: phosphatidic acid binding4.00E-03
70GO:0004435: phosphatidylinositol phospholipase C activity4.00E-03
71GO:0005261: cation channel activity4.00E-03
72GO:0000156: phosphorelay response regulator activity4.14E-03
73GO:0015140: malate transmembrane transporter activity4.72E-03
74GO:0016831: carboxy-lyase activity4.72E-03
75GO:0009881: photoreceptor activity4.72E-03
76GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.38E-03
77GO:0004525: ribonuclease III activity5.48E-03
78GO:0004033: aldo-keto reductase (NADP) activity5.48E-03
79GO:0016301: kinase activity6.12E-03
80GO:0102483: scopolin beta-glucosidase activity6.18E-03
81GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity6.28E-03
82GO:0005267: potassium channel activity6.28E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.28E-03
84GO:0000989: transcription factor activity, transcription factor binding7.12E-03
85GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.12E-03
86GO:0004693: cyclin-dependent protein serine/threonine kinase activity7.56E-03
87GO:0005351: sugar:proton symporter activity7.62E-03
88GO:0008422: beta-glucosidase activity9.50E-03
89GO:0047372: acylglycerol lipase activity9.88E-03
90GO:0004842: ubiquitin-protein transferase activity1.07E-02
91GO:0004565: beta-galactosidase activity1.19E-02
92GO:0005315: inorganic phosphate transmembrane transporter activity1.19E-02
93GO:0005262: calcium channel activity1.19E-02
94GO:0008131: primary amine oxidase activity1.30E-02
95GO:0031624: ubiquitin conjugating enzyme binding1.30E-02
96GO:0004175: endopeptidase activity1.30E-02
97GO:0003712: transcription cofactor activity1.40E-02
98GO:0004970: ionotropic glutamate receptor activity1.40E-02
99GO:0005217: intracellular ligand-gated ion channel activity1.40E-02
100GO:0030552: cAMP binding1.40E-02
101GO:0030553: cGMP binding1.40E-02
102GO:0004407: histone deacetylase activity1.63E-02
103GO:0008324: cation transmembrane transporter activity1.75E-02
104GO:0005216: ion channel activity1.75E-02
105GO:0004497: monooxygenase activity1.80E-02
106GO:0019706: protein-cysteine S-palmitoyltransferase activity1.87E-02
107GO:0061630: ubiquitin protein ligase activity1.92E-02
108GO:0008514: organic anion transmembrane transporter activity2.25E-02
109GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.49E-02
110GO:0005249: voltage-gated potassium channel activity2.52E-02
111GO:0030551: cyclic nucleotide binding2.52E-02
112GO:0004722: protein serine/threonine phosphatase activity2.53E-02
113GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.66E-02
114GO:0019825: oxygen binding3.05E-02
115GO:0015144: carbohydrate transmembrane transporter activity3.24E-02
116GO:0015297: antiporter activity3.57E-02
117GO:0020037: heme binding3.76E-02
118GO:0008270: zinc ion binding4.19E-02
119GO:0030247: polysaccharide binding4.51E-02
120GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.85E-02
121GO:0005506: iron ion binding4.95E-02
RankGO TermAdjusted P value
1GO:0031981: nuclear lumen0.00E+00
2GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
3GO:0030076: light-harvesting complex6.49E-10
4GO:0009522: photosystem I1.99E-08
5GO:0010287: plastoglobule5.28E-08
6GO:0009523: photosystem II9.83E-07
7GO:0005777: peroxisome2.06E-05
8GO:0016021: integral component of membrane1.13E-04
9GO:0009579: thylakoid1.32E-04
10GO:0009534: chloroplast thylakoid5.68E-04
11GO:0016020: membrane1.26E-03
12GO:0042651: thylakoid membrane1.64E-03
13GO:0009517: PSII associated light-harvesting complex II2.11E-03
14GO:0010445: nuclear dicing body2.11E-03
15GO:0032586: protein storage vacuole membrane2.11E-03
16GO:0016607: nuclear speck3.22E-03
17GO:0005851: eukaryotic translation initiation factor 2B complex3.32E-03
18GO:0034707: chloride channel complex3.32E-03
19GO:0009941: chloroplast envelope3.49E-03
20GO:0009535: chloroplast thylakoid membrane3.68E-03
21GO:0000815: ESCRT III complex4.00E-03
22GO:0005742: mitochondrial outer membrane translocase complex6.28E-03
23GO:0000326: protein storage vacuole6.28E-03
24GO:0000307: cyclin-dependent protein kinase holoenzyme complex6.28E-03
25GO:0000151: ubiquitin ligase complex6.85E-03
26GO:0031090: organelle membrane7.12E-03
27GO:0005680: anaphase-promoting complex7.12E-03
28GO:0005783: endoplasmic reticulum1.01E-02
29GO:0005938: cell cortex1.19E-02
30GO:0005622: intracellular1.40E-02
31GO:0031966: mitochondrial membrane1.41E-02
32GO:0005886: plasma membrane1.63E-02
33GO:0005741: mitochondrial outer membrane1.87E-02
34GO:0015629: actin cytoskeleton2.12E-02
35GO:0005744: mitochondrial inner membrane presequence translocase complex2.25E-02
36GO:0005743: mitochondrial inner membrane2.68E-02
37GO:0031965: nuclear membrane2.95E-02
38GO:0005618: cell wall3.31E-02
39GO:0005829: cytosol3.62E-02
40GO:0009705: plant-type vacuole membrane3.74E-02
41GO:0005768: endosome4.36E-02
Gene type



Gene DE type