co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033231: carbohydrate export	0.00E+00
4	GO:0046677: response to antibiotic	0.00E+00
5	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
6	GO:0015995: chlorophyll biosynthetic process	9.15E-08
7	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.89E-06
8	GO:0043085: positive regulation of catalytic activity	2.37E-05
9	GO:0000305: response to oxygen radical	2.88E-05
10	GO:1902334: fructose export from vacuole to cytoplasm	2.88E-05
11	GO:0015755: fructose transport	2.88E-05
12	GO:0050992: dimethylallyl diphosphate biosynthetic process	7.28E-05
13	GO:0070417: cellular response to cold	1.04E-04
14	GO:0006749: glutathione metabolic process	2.57E-04
15	GO:0009910: negative regulation of flower development	3.47E-04
16	GO:0045454: cell redox homeostasis	3.89E-04
17	GO:0032973: amino acid export	4.06E-04
18	GO:0009228: thiamine biosynthetic process	4.06E-04
19	GO:0010189: vitamin E biosynthetic process	4.86E-04
20	GO:0010019: chloroplast-nucleus signaling pathway	4.86E-04
21	GO:0009640: photomorphogenesis	4.87E-04
22	GO:0043090: amino acid import	5.68E-04
23	GO:1900056: negative regulation of leaf senescence	5.68E-04
24	GO:0050821: protein stabilization	6.55E-04
25	GO:0009642: response to light intensity	6.55E-04
26	GO:0010100: negative regulation of photomorphogenesis	7.44E-04
27	GO:0071482: cellular response to light stimulus	7.44E-04
28	GO:0009657: plastid organization	7.44E-04
29	GO:0080144: amino acid homeostasis	8.35E-04
30	GO:0048507: meristem development	8.35E-04
31	GO:0010380: regulation of chlorophyll biosynthetic process	9.29E-04
32	GO:0045036: protein targeting to chloroplast	1.03E-03
33	GO:0006995: cellular response to nitrogen starvation	1.03E-03
34	GO:0009750: response to fructose	1.13E-03
35	GO:0030148: sphingolipid biosynthetic process	1.13E-03
36	GO:0009698: phenylpropanoid metabolic process	1.13E-03
37	GO:0016925: protein sumoylation	1.23E-03
38	GO:0009266: response to temperature stimulus	1.45E-03
39	GO:0007623: circadian rhythm	1.53E-03
40	GO:0009833: plant-type primary cell wall biogenesis	1.67E-03
41	GO:0034976: response to endoplasmic reticulum stress	1.67E-03
42	GO:0016114: terpenoid biosynthetic process	2.04E-03
43	GO:0051260: protein homooligomerization	2.04E-03
44	GO:0010017: red or far-red light signaling pathway	2.17E-03
45	GO:0006662: glycerol ether metabolic process	2.84E-03
46	GO:0010305: leaf vascular tissue pattern formation	2.84E-03
47	GO:0009646: response to absence of light	2.99E-03
48	GO:0010193: response to ozone	3.28E-03
49	GO:0006629: lipid metabolic process	4.25E-03
50	GO:0030244: cellulose biosynthetic process	5.05E-03
51	GO:0000160: phosphorelay signal transduction system	5.22E-03
52	GO:0006865: amino acid transport	5.76E-03
53	GO:0034599: cellular response to oxidative stress	6.13E-03
54	GO:0006631: fatty acid metabolic process	6.69E-03
55	GO:0010114: response to red light	7.08E-03
56	GO:0055114: oxidation-reduction process	7.42E-03
57	GO:0006364: rRNA processing	8.71E-03
58	GO:0010224: response to UV-B	8.92E-03
59	GO:0006417: regulation of translation	9.36E-03
60	GO:0006508: proteolysis	1.03E-02
61	GO:0009624: response to nematode	1.12E-02
62	GO:0006396: RNA processing	1.14E-02
63	GO:0009790: embryo development	1.46E-02
64	GO:0009658: chloroplast organization	2.24E-02
65	GO:0042254: ribosome biogenesis	2.27E-02
66	GO:0009723: response to ethylene	2.48E-02
67	GO:0015979: photosynthesis	2.87E-02
68	GO:0045892: negative regulation of transcription, DNA-templated	3.00E-02
69	GO:0032259: methylation	3.34E-02
70	GO:0016042: lipid catabolic process	3.38E-02
71	GO:0006397: mRNA processing	3.55E-02
72	GO:0048364: root development	3.55E-02
73	GO:0009908: flower development	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
3	GO:0015284: fructose uniporter activity	0.00E+00
4	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
5	GO:0034639: L-amino acid efflux transmembrane transporter activity	0.00E+00
6	GO:0052631: sphingolipid delta-8 desaturase activity	2.88E-05
7	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	2.88E-05
8	GO:0046906: tetrapyrrole binding	2.88E-05
9	GO:0005353: fructose transmembrane transporter activity	7.28E-05
10	GO:0004362: glutathione-disulfide reductase activity	7.28E-05
11	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.28E-05
12	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.28E-05
13	GO:0016805: dipeptidase activity	1.27E-04
14	GO:0004180: carboxypeptidase activity	1.27E-04
15	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.27E-04
16	GO:0019789: SUMO transferase activity	1.89E-04
17	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.89E-04
18	GO:0051538: 3 iron, 4 sulfur cluster binding	3.30E-04
19	GO:0019899: enzyme binding	5.68E-04
20	GO:0000989: transcription factor activity, transcription factor binding	8.35E-04
21	GO:0016874: ligase activity	8.59E-04
22	GO:0008047: enzyme activator activity	1.03E-03
23	GO:0019904: protein domain specific binding	1.13E-03
24	GO:0051119: sugar transmembrane transporter activity	1.56E-03
25	GO:0003954: NADH dehydrogenase activity	1.79E-03
26	GO:0004176: ATP-dependent peptidase activity	2.04E-03
27	GO:0016760: cellulose synthase (UDP-forming) activity	2.30E-03
28	GO:0003756: protein disulfide isomerase activity	2.43E-03
29	GO:0003727: single-stranded RNA binding	2.43E-03
30	GO:0047134: protein-disulfide reductase activity	2.57E-03
31	GO:0004791: thioredoxin-disulfide reductase activity	2.99E-03
32	GO:0000156: phosphorelay response regulator activity	3.58E-03
33	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.58E-03
34	GO:0016759: cellulose synthase activity	3.73E-03
35	GO:0005515: protein binding	5.51E-03
36	GO:0050661: NADP binding	6.50E-03
37	GO:0004185: serine-type carboxypeptidase activity	7.08E-03
38	GO:0051537: 2 iron, 2 sulfur cluster binding	7.48E-03
39	GO:0043621: protein self-association	7.48E-03
40	GO:0016298: lipase activity	8.92E-03
41	GO:0015171: amino acid transmembrane transporter activity	9.36E-03
42	GO:0015035: protein disulfide oxidoreductase activity	1.14E-02
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.33E-02
44	GO:0008168: methyltransferase activity	2.18E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	2.27E-02
46	GO:0050660: flavin adenine dinucleotide binding	2.48E-02
47	GO:0008233: peptidase activity	2.58E-02
48	GO:0052689: carboxylic ester hydrolase activity	2.80E-02
49	GO:0004871: signal transducer activity	3.07E-02
50	GO:0046872: metal ion binding	3.08E-02
51	GO:0008289: lipid binding	4.36E-02
52	GO:0016887: ATPase activity	4.71E-02
53	GO:0008270: zinc ion binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	7.01E-06
2	GO:0031304: intrinsic component of mitochondrial inner membrane	7.28E-05
3	GO:0005623: cell	8.17E-05
4	GO:0009507: chloroplast	1.94E-04
5	GO:0031969: chloroplast membrane	3.07E-04
6	GO:0030095: chloroplast photosystem II	1.45E-03
7	GO:0042651: thylakoid membrane	1.92E-03
8	GO:0009535: chloroplast thylakoid membrane	6.90E-03
9	GO:0009706: chloroplast inner membrane	1.12E-02
10	GO:0010287: plastoglobule	1.26E-02
11	GO:0009543: chloroplast thylakoid lumen	1.31E-02
12	GO:0005622: intracellular	1.34E-02
13	GO:0009705: plant-type vacuole membrane	1.64E-02
14	GO:0009941: chloroplast envelope	1.77E-02
15	GO:0005789: endoplasmic reticulum membrane	2.33E-02
16	GO:0016021: integral component of membrane	4.76E-02