Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0042407: cristae formation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0090393: sepal giant cell development0.00E+00
7GO:0006573: valine metabolic process0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0010430: fatty acid omega-oxidation0.00E+00
10GO:0015976: carbon utilization1.60E-06
11GO:0071555: cell wall organization2.10E-05
12GO:0010411: xyloglucan metabolic process2.71E-05
13GO:0006065: UDP-glucuronate biosynthetic process3.63E-05
14GO:0016117: carotenoid biosynthetic process5.61E-05
15GO:0042742: defense response to bacterium9.21E-05
16GO:0009735: response to cytokinin1.05E-04
17GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-04
18GO:0042546: cell wall biogenesis1.14E-04
19GO:0006546: glycine catabolic process1.35E-04
20GO:0010037: response to carbon dioxide1.35E-04
21GO:0019464: glycine decarboxylation via glycine cleavage system1.35E-04
22GO:2000122: negative regulation of stomatal complex development1.35E-04
23GO:0016123: xanthophyll biosynthetic process2.07E-04
24GO:0006810: transport3.49E-04
25GO:0006418: tRNA aminoacylation for protein translation3.51E-04
26GO:0042026: protein refolding3.92E-04
27GO:0061077: chaperone-mediated protein folding3.98E-04
28GO:0016051: carbohydrate biosynthetic process4.90E-04
29GO:1901349: glucosinolate transport4.92E-04
30GO:0006438: valyl-tRNA aminoacylation4.92E-04
31GO:0010442: guard cell morphogenesis4.92E-04
32GO:0071370: cellular response to gibberellin stimulus4.92E-04
33GO:0090449: phloem glucosinolate loading4.92E-04
34GO:0006551: leucine metabolic process4.92E-04
35GO:0019510: S-adenosylhomocysteine catabolic process4.92E-04
36GO:0010597: green leaf volatile biosynthetic process4.92E-04
37GO:0007155: cell adhesion6.27E-04
38GO:0000271: polysaccharide biosynthetic process6.87E-04
39GO:0045489: pectin biosynthetic process7.56E-04
40GO:0032544: plastid translation7.64E-04
41GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.93E-04
42GO:0033353: S-adenosylmethionine cycle1.06E-03
43GO:0010069: zygote asymmetric cytokinesis in embryo sac1.06E-03
44GO:0006423: cysteinyl-tRNA aminoacylation1.06E-03
45GO:0030388: fructose 1,6-bisphosphate metabolic process1.06E-03
46GO:0010424: DNA methylation on cytosine within a CG sequence1.06E-03
47GO:0043039: tRNA aminoacylation1.06E-03
48GO:0052541: plant-type cell wall cellulose metabolic process1.06E-03
49GO:0006695: cholesterol biosynthetic process1.06E-03
50GO:0010583: response to cyclopentenone1.07E-03
51GO:0009773: photosynthetic electron transport in photosystem I1.45E-03
52GO:0019684: photosynthesis, light reaction1.45E-03
53GO:0006000: fructose metabolic process1.73E-03
54GO:0006518: peptide metabolic process1.73E-03
55GO:0071492: cellular response to UV-A1.73E-03
56GO:0006696: ergosterol biosynthetic process1.73E-03
57GO:0015840: urea transport1.73E-03
58GO:0090506: axillary shoot meristem initiation1.73E-03
59GO:0009767: photosynthetic electron transport chain1.88E-03
60GO:0010020: chloroplast fission2.13E-03
61GO:0019253: reductive pentose-phosphate cycle2.13E-03
62GO:0009409: response to cold2.19E-03
63GO:0009658: chloroplast organization2.21E-03
64GO:0051016: barbed-end actin filament capping2.51E-03
65GO:0006165: nucleoside diphosphate phosphorylation2.51E-03
66GO:0006228: UTP biosynthetic process2.51E-03
67GO:0043572: plastid fission2.51E-03
68GO:0032877: positive regulation of DNA endoreduplication2.51E-03
69GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.51E-03
70GO:0007231: osmosensory signaling pathway2.51E-03
71GO:0051085: chaperone mediated protein folding requiring cofactor2.51E-03
72GO:0006241: CTP biosynthetic process2.51E-03
73GO:0080170: hydrogen peroxide transmembrane transport2.51E-03
74GO:0006833: water transport2.66E-03
75GO:0006749: glutathione metabolic process3.38E-03
76GO:0034440: lipid oxidation3.38E-03
77GO:0006542: glutamine biosynthetic process3.38E-03
78GO:0019676: ammonia assimilation cycle3.38E-03
79GO:0071486: cellular response to high light intensity3.38E-03
80GO:0009765: photosynthesis, light harvesting3.38E-03
81GO:0033500: carbohydrate homeostasis3.38E-03
82GO:0006183: GTP biosynthetic process3.38E-03
83GO:0045727: positive regulation of translation3.38E-03
84GO:0015979: photosynthesis4.09E-03
85GO:0009294: DNA mediated transformation4.28E-03
86GO:0010236: plastoquinone biosynthetic process4.33E-03
87GO:0016120: carotene biosynthetic process4.33E-03
88GO:0046785: microtubule polymerization4.33E-03
89GO:0045454: cell redox homeostasis4.45E-03
90GO:0045490: pectin catabolic process4.52E-03
91GO:0010190: cytochrome b6f complex assembly5.37E-03
92GO:0006796: phosphate-containing compound metabolic process5.37E-03
93GO:0016554: cytidine to uridine editing5.37E-03
94GO:0034220: ion transmembrane transport5.46E-03
95GO:0009612: response to mechanical stimulus6.48E-03
96GO:0009082: branched-chain amino acid biosynthetic process6.48E-03
97GO:0006458: 'de novo' protein folding6.48E-03
98GO:0010067: procambium histogenesis6.48E-03
99GO:0017148: negative regulation of translation6.48E-03
100GO:0009099: valine biosynthetic process6.48E-03
101GO:1901259: chloroplast rRNA processing6.48E-03
102GO:0009554: megasporogenesis6.48E-03
103GO:0010555: response to mannitol6.48E-03
104GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.48E-03
105GO:0009955: adaxial/abaxial pattern specification6.48E-03
106GO:0042372: phylloquinone biosynthetic process6.48E-03
107GO:0009645: response to low light intensity stimulus7.66E-03
108GO:0080027: response to herbivore7.66E-03
109GO:0009642: response to light intensity8.92E-03
110GO:0045010: actin nucleation8.92E-03
111GO:0052543: callose deposition in cell wall8.92E-03
112GO:0055114: oxidation-reduction process9.14E-03
113GO:0048193: Golgi vesicle transport1.03E-02
114GO:0009097: isoleucine biosynthetic process1.03E-02
115GO:0009657: plastid organization1.03E-02
116GO:0009932: cell tip growth1.03E-02
117GO:0006002: fructose 6-phosphate metabolic process1.03E-02
118GO:0022900: electron transport chain1.03E-02
119GO:0006075: (1->3)-beta-D-glucan biosynthetic process1.03E-02
120GO:0016126: sterol biosynthetic process1.06E-02
121GO:0045337: farnesyl diphosphate biosynthetic process1.17E-02
122GO:0033384: geranyl diphosphate biosynthetic process1.17E-02
123GO:0006754: ATP biosynthetic process1.17E-02
124GO:0048589: developmental growth1.17E-02
125GO:0010206: photosystem II repair1.17E-02
126GO:0080167: response to karrikin1.22E-02
127GO:1900865: chloroplast RNA modification1.31E-02
128GO:0016573: histone acetylation1.31E-02
129GO:0043067: regulation of programmed cell death1.31E-02
130GO:0006349: regulation of gene expression by genetic imprinting1.31E-02
131GO:0009817: defense response to fungus, incompatible interaction1.38E-02
132GO:0009870: defense response signaling pathway, resistance gene-dependent1.46E-02
133GO:0043069: negative regulation of programmed cell death1.46E-02
134GO:0000160: phosphorelay signal transduction system1.46E-02
135GO:0009407: toxin catabolic process1.53E-02
136GO:0010119: regulation of stomatal movement1.60E-02
137GO:0000272: polysaccharide catabolic process1.62E-02
138GO:0006415: translational termination1.62E-02
139GO:0010216: maintenance of DNA methylation1.62E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.62E-02
141GO:0006816: calcium ion transport1.62E-02
142GO:0045037: protein import into chloroplast stroma1.79E-02
143GO:0006790: sulfur compound metabolic process1.79E-02
144GO:0007623: circadian rhythm1.91E-02
145GO:0030036: actin cytoskeleton organization1.96E-02
146GO:0050826: response to freezing1.96E-02
147GO:0009725: response to hormone1.96E-02
148GO:0006094: gluconeogenesis1.96E-02
149GO:0005986: sucrose biosynthetic process1.96E-02
150GO:0046686: response to cadmium ion2.08E-02
151GO:0006631: fatty acid metabolic process2.09E-02
152GO:0010223: secondary shoot formation2.13E-02
153GO:0048768: root hair cell tip growth2.13E-02
154GO:0010207: photosystem II assembly2.13E-02
155GO:0009744: response to sucrose2.27E-02
156GO:0051707: response to other organism2.27E-02
157GO:0010167: response to nitrate2.31E-02
158GO:0005985: sucrose metabolic process2.31E-02
159GO:0070588: calcium ion transmembrane transport2.31E-02
160GO:0046854: phosphatidylinositol phosphorylation2.31E-02
161GO:0009617: response to bacterium2.39E-02
162GO:0006636: unsaturated fatty acid biosynthetic process2.50E-02
163GO:0006071: glycerol metabolic process2.50E-02
164GO:0009636: response to toxic substance2.56E-02
165GO:0006338: chromatin remodeling2.69E-02
166GO:0007010: cytoskeleton organization2.69E-02
167GO:0019344: cysteine biosynthetic process2.69E-02
168GO:0009695: jasmonic acid biosynthetic process2.89E-02
169GO:0010026: trichome differentiation2.89E-02
170GO:0007017: microtubule-based process2.89E-02
171GO:0009736: cytokinin-activated signaling pathway3.06E-02
172GO:0031408: oxylipin biosynthetic process3.09E-02
173GO:0006730: one-carbon metabolic process3.29E-02
174GO:0007005: mitochondrion organization3.29E-02
175GO:0080092: regulation of pollen tube growth3.29E-02
176GO:0019748: secondary metabolic process3.29E-02
177GO:0042254: ribosome biogenesis3.38E-02
178GO:0001944: vasculature development3.50E-02
179GO:0006284: base-excision repair3.72E-02
180GO:0010089: xylem development3.72E-02
181GO:0080022: primary root development4.16E-02
182GO:0000413: protein peptidyl-prolyl isomerization4.16E-02
183GO:0010087: phloem or xylem histogenesis4.16E-02
184GO:0042631: cellular response to water deprivation4.16E-02
185GO:0042545: cell wall modification4.22E-02
186GO:0010197: polar nucleus fusion4.39E-02
187GO:0008360: regulation of cell shape4.39E-02
188GO:0005975: carbohydrate metabolic process4.73E-02
189GO:0019252: starch biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0050613: delta14-sterol reductase activity0.00E+00
2GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
3GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
10GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
11GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
12GO:0051920: peroxiredoxin activity1.28E-07
13GO:0016209: antioxidant activity4.48E-07
14GO:0016762: xyloglucan:xyloglucosyl transferase activity7.11E-06
15GO:0005528: FK506 binding1.87E-05
16GO:0016798: hydrolase activity, acting on glycosyl bonds2.71E-05
17GO:0003979: UDP-glucose 6-dehydrogenase activity3.63E-05
18GO:0004375: glycine dehydrogenase (decarboxylating) activity7.78E-05
19GO:0019843: rRNA binding9.99E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.45E-04
21GO:0004089: carbonate dehydratase activity1.62E-04
22GO:0016722: oxidoreductase activity, oxidizing metal ions1.76E-04
23GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.18E-04
24GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.92E-04
25GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.49E-04
26GO:0080132: fatty acid alpha-hydroxylase activity4.92E-04
27GO:0003838: sterol 24-C-methyltransferase activity4.92E-04
28GO:0003984: acetolactate synthase activity4.92E-04
29GO:0004831: tyrosine-tRNA ligase activity4.92E-04
30GO:0004832: valine-tRNA ligase activity4.92E-04
31GO:0051996: squalene synthase activity4.92E-04
32GO:0090448: glucosinolate:proton symporter activity4.92E-04
33GO:0010313: phytochrome binding4.92E-04
34GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.92E-04
35GO:0004560: alpha-L-fucosidase activity4.92E-04
36GO:0004013: adenosylhomocysteinase activity4.92E-04
37GO:0004812: aminoacyl-tRNA ligase activity6.22E-04
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.06E-03
39GO:0046593: mandelonitrile lyase activity1.06E-03
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.06E-03
41GO:0010291: carotene beta-ring hydroxylase activity1.06E-03
42GO:0008967: phosphoglycolate phosphatase activity1.06E-03
43GO:0042389: omega-3 fatty acid desaturase activity1.06E-03
44GO:0004618: phosphoglycerate kinase activity1.06E-03
45GO:0010297: heteropolysaccharide binding1.06E-03
46GO:0004047: aminomethyltransferase activity1.06E-03
47GO:0004817: cysteine-tRNA ligase activity1.06E-03
48GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.06E-03
49GO:0044183: protein binding involved in protein folding1.45E-03
50GO:0003913: DNA photolyase activity1.73E-03
51GO:0002161: aminoacyl-tRNA editing activity1.73E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.73E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.73E-03
54GO:0016165: linoleate 13S-lipoxygenase activity1.73E-03
55GO:0005504: fatty acid binding1.73E-03
56GO:0031072: heat shock protein binding1.88E-03
57GO:0051082: unfolded protein binding1.95E-03
58GO:0016149: translation release factor activity, codon specific2.51E-03
59GO:0004550: nucleoside diphosphate kinase activity2.51E-03
60GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.51E-03
61GO:0001872: (1->3)-beta-D-glucan binding2.51E-03
62GO:0048027: mRNA 5'-UTR binding2.51E-03
63GO:0016758: transferase activity, transferring hexosyl groups2.65E-03
64GO:0015204: urea transmembrane transporter activity3.38E-03
65GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.38E-03
66GO:0045430: chalcone isomerase activity3.38E-03
67GO:0030570: pectate lyase activity4.28E-03
68GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen4.33E-03
69GO:0004356: glutamate-ammonia ligase activity4.33E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity4.33E-03
71GO:0051287: NAD binding5.28E-03
72GO:0016208: AMP binding5.37E-03
73GO:0016462: pyrophosphatase activity5.37E-03
74GO:0042578: phosphoric ester hydrolase activity5.37E-03
75GO:0008200: ion channel inhibitor activity5.37E-03
76GO:0080030: methyl indole-3-acetate esterase activity5.37E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.48E-03
78GO:0016832: aldehyde-lyase activity6.48E-03
79GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.48E-03
80GO:0051753: mannan synthase activity6.48E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.48E-03
82GO:0045735: nutrient reservoir activity7.50E-03
83GO:0009881: photoreceptor activity7.66E-03
84GO:0043295: glutathione binding7.66E-03
85GO:0004427: inorganic diphosphatase activity7.66E-03
86GO:0000156: phosphorelay response regulator activity8.31E-03
87GO:0004601: peroxidase activity8.79E-03
88GO:0030599: pectinesterase activity8.81E-03
89GO:0016759: cellulose synthase activity8.84E-03
90GO:0004564: beta-fructofuranosidase activity8.92E-03
91GO:0005200: structural constituent of cytoskeleton9.40E-03
92GO:0016757: transferase activity, transferring glycosyl groups9.81E-03
93GO:0016597: amino acid binding9.98E-03
94GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.03E-02
95GO:0003843: 1,3-beta-D-glucan synthase activity1.03E-02
96GO:0015250: water channel activity1.06E-02
97GO:0008889: glycerophosphodiester phosphodiesterase activity1.17E-02
98GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.17E-02
99GO:0003747: translation release factor activity1.17E-02
100GO:0004337: geranyltranstransferase activity1.17E-02
101GO:0030247: polysaccharide binding1.25E-02
102GO:0004575: sucrose alpha-glucosidase activity1.31E-02
103GO:0003735: structural constituent of ribosome1.45E-02
104GO:0004222: metalloendopeptidase activity1.53E-02
105GO:0030145: manganese ion binding1.60E-02
106GO:0004860: protein kinase inhibitor activity1.62E-02
107GO:0004161: dimethylallyltranstransferase activity1.62E-02
108GO:0005089: Rho guanyl-nucleotide exchange factor activity1.62E-02
109GO:0000049: tRNA binding1.79E-02
110GO:0004672: protein kinase activity1.84E-02
111GO:0004565: beta-galactosidase activity1.96E-02
112GO:0005262: calcium channel activity1.96E-02
113GO:0004364: glutathione transferase activity2.18E-02
114GO:0004185: serine-type carboxypeptidase activity2.27E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding2.46E-02
116GO:0005198: structural molecule activity2.56E-02
117GO:0004857: enzyme inhibitor activity2.69E-02
118GO:0004176: ATP-dependent peptidase activity3.09E-02
119GO:0033612: receptor serine/threonine kinase binding3.09E-02
120GO:0005507: copper ion binding3.16E-02
121GO:0016788: hydrolase activity, acting on ester bonds3.38E-02
122GO:0045330: aspartyl esterase activity3.39E-02
123GO:0022891: substrate-specific transmembrane transporter activity3.50E-02
124GO:0003756: protein disulfide isomerase activity3.72E-02
125GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.74E-02
126GO:0005102: receptor binding3.94E-02
127GO:0004650: polygalacturonase activity3.98E-02
128GO:0050662: coenzyme binding4.62E-02
129GO:0019901: protein kinase binding4.85E-02
130GO:0004872: receptor activity4.85E-02
131GO:0052689: carboxylic ester hydrolase activity4.86E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast1.13E-24
5GO:0009570: chloroplast stroma2.41E-21
6GO:0009535: chloroplast thylakoid membrane1.27E-16
7GO:0009941: chloroplast envelope3.22E-16
8GO:0048046: apoplast7.06E-16
9GO:0009543: chloroplast thylakoid lumen4.50E-13
10GO:0009579: thylakoid2.64E-12
11GO:0031225: anchored component of membrane2.26E-10
12GO:0009505: plant-type cell wall1.11E-09
13GO:0046658: anchored component of plasma membrane7.83E-08
14GO:0005618: cell wall2.28E-07
15GO:0010319: stromule6.46E-07
16GO:0009654: photosystem II oxygen evolving complex7.87E-07
17GO:0005576: extracellular region3.89E-06
18GO:0031977: thylakoid lumen7.51E-06
19GO:0030095: chloroplast photosystem II9.08E-06
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.15E-05
21GO:0009534: chloroplast thylakoid5.89E-05
22GO:0005960: glycine cleavage complex7.78E-05
23GO:0019898: extrinsic component of membrane9.86E-05
24GO:0042170: plastid membrane1.06E-03
25GO:0000427: plastid-encoded plastid RNA polymerase complex1.06E-03
26GO:0000311: plastid large ribosomal subunit1.66E-03
27GO:0031012: extracellular matrix1.88E-03
28GO:0005775: vacuolar lumen2.51E-03
29GO:0005875: microtubule associated complex2.66E-03
30GO:0015934: large ribosomal subunit2.66E-03
31GO:0031969: chloroplast membrane3.24E-03
32GO:0016020: membrane4.12E-03
33GO:0010168: ER body5.37E-03
34GO:0005886: plasma membrane6.64E-03
35GO:0005773: vacuole6.94E-03
36GO:0042807: central vacuole7.66E-03
37GO:0009533: chloroplast stromal thylakoid7.66E-03
38GO:0000123: histone acetyltransferase complex7.66E-03
39GO:0009506: plasmodesma7.81E-03
40GO:0005840: ribosome8.99E-03
41GO:0005778: peroxisomal membrane9.40E-03
42GO:0009706: chloroplast inner membrane9.51E-03
43GO:0009539: photosystem II reaction center1.03E-02
44GO:0000148: 1,3-beta-D-glucan synthase complex1.03E-02
45GO:0000326: protein storage vacuole1.03E-02
46GO:0045298: tubulin complex1.17E-02
47GO:0005763: mitochondrial small ribosomal subunit1.17E-02
48GO:0010287: plastoglobule1.18E-02
49GO:0016324: apical plasma membrane1.46E-02
50GO:0055028: cortical microtubule1.46E-02
51GO:0000139: Golgi membrane1.55E-02
52GO:0000325: plant-type vacuole1.60E-02
53GO:0022626: cytosolic ribosome1.61E-02
54GO:0009508: plastid chromosome1.96E-02
55GO:0030176: integral component of endoplasmic reticulum membrane2.31E-02
56GO:0005758: mitochondrial intermembrane space2.69E-02
57GO:0042651: thylakoid membrane2.89E-02
58GO:0009532: plastid stroma3.09E-02
59GO:0005794: Golgi apparatus3.93E-02
60GO:0009523: photosystem II4.85E-02
Gene type



Gene DE type