co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0090393: sepal giant cell development	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0019253: reductive pentose-phosphate cycle	8.83E-09
8	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-06
9	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.28E-06
10	GO:0016117: carotenoid biosynthetic process	5.06E-06
11	GO:0006000: fructose metabolic process	8.31E-06
12	GO:0009773: photosynthetic electron transport in photosystem I	1.72E-05
13	GO:0019464: glycine decarboxylation via glycine cleavage system	3.46E-05
14	GO:0009765: photosynthesis, light harvesting	3.46E-05
15	GO:0006546: glycine catabolic process	3.46E-05
16	GO:0009902: chloroplast relocation	3.46E-05
17	GO:0016123: xanthophyll biosynthetic process	5.56E-05
18	GO:0061077: chaperone-mediated protein folding	7.61E-05
19	GO:0009735: response to cytokinin	8.33E-05
20	GO:0006810: transport	9.75E-05
21	GO:0000066: mitochondrial ornithine transport	2.20E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	2.20E-04
23	GO:1901349: glucosinolate transport	2.20E-04
24	GO:0090449: phloem glucosinolate loading	2.20E-04
25	GO:0071370: cellular response to gibberellin stimulus	2.20E-04
26	GO:0006659: phosphatidylserine biosynthetic process	2.20E-04
27	GO:0015801: aromatic amino acid transport	2.20E-04
28	GO:0006002: fructose 6-phosphate metabolic process	2.36E-04
29	GO:0009658: chloroplast organization	2.63E-04
30	GO:0000272: polysaccharide catabolic process	4.63E-04
31	GO:0018119: peptidyl-cysteine S-nitrosylation	4.63E-04
32	GO:2000123: positive regulation of stomatal complex development	4.90E-04
33	GO:0018298: protein-chromophore linkage	4.99E-04
34	GO:0015979: photosynthesis	5.01E-04
35	GO:0006094: gluconeogenesis	6.01E-04
36	GO:0009767: photosynthetic electron transport chain	6.01E-04
37	GO:0005986: sucrose biosynthetic process	6.01E-04
38	GO:0006633: fatty acid biosynthetic process	6.43E-04
39	GO:0009853: photorespiration	6.73E-04
40	GO:0010207: photosystem II assembly	6.76E-04
41	GO:0005985: sucrose metabolic process	7.56E-04
42	GO:0005977: glycogen metabolic process	7.98E-04
43	GO:0006011: UDP-glucose metabolic process	7.98E-04
44	GO:0000913: preprophase band assembly	7.98E-04
45	GO:0031022: nuclear migration along microfilament	7.98E-04
46	GO:0071492: cellular response to UV-A	7.98E-04
47	GO:0006696: ergosterol biosynthetic process	7.98E-04
48	GO:0009744: response to sucrose	9.24E-04
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.14E-03
50	GO:0007231: osmosensory signaling pathway	1.14E-03
51	GO:0043572: plastid fission	1.14E-03
52	GO:0032877: positive regulation of DNA endoreduplication	1.14E-03
53	GO:0019676: ammonia assimilation cycle	1.51E-03
54	GO:0015976: carbon utilization	1.51E-03
55	GO:0071486: cellular response to high light intensity	1.51E-03
56	GO:0045727: positive regulation of translation	1.51E-03
57	GO:2000122: negative regulation of stomatal complex development	1.51E-03
58	GO:0033500: carbohydrate homeostasis	1.51E-03
59	GO:2000038: regulation of stomatal complex development	1.51E-03
60	GO:0006021: inositol biosynthetic process	1.51E-03
61	GO:0009694: jasmonic acid metabolic process	1.51E-03
62	GO:0010037: response to carbon dioxide	1.51E-03
63	GO:0006542: glutamine biosynthetic process	1.51E-03
64	GO:0046686: response to cadmium ion	1.56E-03
65	GO:0006096: glycolytic process	1.65E-03
66	GO:0010375: stomatal complex patterning	1.93E-03
67	GO:0016120: carotene biosynthetic process	1.93E-03
68	GO:0009904: chloroplast accumulation movement	1.93E-03
69	GO:0010236: plastoquinone biosynthetic process	1.93E-03
70	GO:0007059: chromosome segregation	1.95E-03
71	GO:0009791: post-embryonic development	2.09E-03
72	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.38E-03
73	GO:0007264: small GTPase mediated signal transduction	2.38E-03
74	GO:0016554: cytidine to uridine editing	2.38E-03
75	GO:0010190: cytochrome b6f complex assembly	2.38E-03
76	GO:0010942: positive regulation of cell death	2.38E-03
77	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.86E-03
78	GO:0042026: protein refolding	2.86E-03
79	GO:0006458: 'de novo' protein folding	2.86E-03
80	GO:0017148: negative regulation of translation	2.86E-03
81	GO:0009903: chloroplast avoidance movement	2.86E-03
82	GO:0009409: response to cold	3.86E-03
83	GO:0052543: callose deposition in cell wall	3.90E-03
84	GO:0008610: lipid biosynthetic process	3.90E-03
85	GO:0007623: circadian rhythm	4.18E-03
86	GO:0017004: cytochrome complex assembly	4.47E-03
87	GO:0022900: electron transport chain	4.47E-03
88	GO:0009657: plastid organization	4.47E-03
89	GO:0032544: plastid translation	4.47E-03
90	GO:0010206: photosystem II repair	5.06E-03
91	GO:0048589: developmental growth	5.06E-03
92	GO:0009637: response to blue light	5.30E-03
93	GO:0009638: phototropism	5.68E-03
94	GO:1900865: chloroplast RNA modification	5.68E-03
95	GO:0006259: DNA metabolic process	6.32E-03
96	GO:0010192: mucilage biosynthetic process	6.32E-03
97	GO:0043069: negative regulation of programmed cell death	6.32E-03
98	GO:0006816: calcium ion transport	6.98E-03
99	GO:0019684: photosynthesis, light reaction	6.98E-03
100	GO:0006265: DNA topological change	6.98E-03
101	GO:0043085: positive regulation of catalytic activity	6.98E-03
102	GO:0006415: translational termination	6.98E-03
103	GO:0009725: response to hormone	8.39E-03
104	GO:0006006: glucose metabolic process	8.39E-03
105	GO:0009887: animal organ morphogenesis	9.13E-03
106	GO:0048768: root hair cell tip growth	9.13E-03
107	GO:0010020: chloroplast fission	9.13E-03
108	GO:0090351: seedling development	9.90E-03
109	GO:0070588: calcium ion transmembrane transport	9.90E-03
110	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.00E-02
111	GO:0009833: plant-type primary cell wall biogenesis	1.07E-02
112	GO:0006636: unsaturated fatty acid biosynthetic process	1.07E-02
113	GO:0007010: cytoskeleton organization	1.15E-02
114	GO:0009695: jasmonic acid biosynthetic process	1.23E-02
115	GO:0009768: photosynthesis, light harvesting in photosystem I	1.23E-02
116	GO:0031408: oxylipin biosynthetic process	1.32E-02
117	GO:0003333: amino acid transmembrane transport	1.32E-02
118	GO:0080092: regulation of pollen tube growth	1.40E-02
119	GO:0006730: one-carbon metabolic process	1.40E-02
120	GO:0009294: DNA mediated transformation	1.49E-02
121	GO:0006284: base-excision repair	1.58E-02
122	GO:0010118: stomatal movement	1.77E-02
123	GO:0042631: cellular response to water deprivation	1.77E-02
124	GO:0080022: primary root development	1.77E-02
125	GO:0006662: glycerol ether metabolic process	1.87E-02
126	GO:0007018: microtubule-based movement	1.97E-02
127	GO:0019252: starch biosynthetic process	2.07E-02
128	GO:0008654: phospholipid biosynthetic process	2.07E-02
129	GO:0010583: response to cyclopentenone	2.28E-02
130	GO:0016032: viral process	2.28E-02
131	GO:0010090: trichome morphogenesis	2.38E-02
132	GO:0007267: cell-cell signaling	2.60E-02
133	GO:0051607: defense response to virus	2.71E-02
134	GO:0000910: cytokinesis	2.71E-02
135	GO:0009617: response to bacterium	2.72E-02
136	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.94E-02
137	GO:0009416: response to light stimulus	3.23E-02
138	GO:0009611: response to wounding	3.32E-02
139	GO:0009817: defense response to fungus, incompatible interaction	3.41E-02
140	GO:0030244: cellulose biosynthetic process	3.41E-02
141	GO:0048767: root hair elongation	3.53E-02
142	GO:0000160: phosphorelay signal transduction system	3.53E-02
143	GO:0009832: plant-type cell wall biogenesis	3.53E-02
144	GO:0051301: cell division	3.59E-02
145	GO:0009407: toxin catabolic process	3.66E-02
146	GO:0010218: response to far red light	3.66E-02
147	GO:0007568: aging	3.78E-02
148	GO:0010119: regulation of stomatal movement	3.78E-02
149	GO:0006865: amino acid transport	3.91E-02
150	GO:0007049: cell cycle	3.93E-02
151	GO:0009867: jasmonic acid mediated signaling pathway	4.03E-02
152	GO:0016051: carbohydrate biosynthetic process	4.03E-02
153	GO:0034599: cellular response to oxidative stress	4.16E-02
154	GO:0080167: response to karrikin	4.36E-02
155	GO:0006839: mitochondrial transport	4.43E-02
156	GO:0005975: carbohydrate metabolic process	4.53E-02
157	GO:0006631: fatty acid metabolic process	4.56E-02
158	GO:0008283: cell proliferation	4.83E-02
159	GO:0010114: response to red light	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
4	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0046905: phytoene synthase activity	0.00E+00
9	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
10	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
11	GO:0004618: phosphoglycerate kinase activity	2.28E-06
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-06
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.90E-05
14	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.13E-04
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.20E-04
16	GO:0080132: fatty acid alpha-hydroxylase activity	2.20E-04
17	GO:0051996: squalene synthase activity	2.20E-04
18	GO:0010313: phytochrome binding	2.20E-04
19	GO:0090448: glucosinolate:proton symporter activity	2.20E-04
20	GO:0042389: omega-3 fatty acid desaturase activity	4.90E-04
21	GO:0010297: heteropolysaccharide binding	4.90E-04
22	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.90E-04
23	GO:0004047: aminomethyltransferase activity	4.90E-04
24	GO:0015173: aromatic amino acid transmembrane transporter activity	4.90E-04
25	GO:0000064: L-ornithine transmembrane transporter activity	4.90E-04
26	GO:0004512: inositol-3-phosphate synthase activity	4.90E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.90E-04
28	GO:0008967: phosphoglycolate phosphatase activity	4.90E-04
29	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.90E-04
30	GO:0010291: carotene beta-ring hydroxylase activity	4.90E-04
31	GO:0003913: DNA photolyase activity	7.98E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	7.98E-04
33	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.98E-04
34	GO:0005528: FK506 binding	9.27E-04
35	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.14E-03
36	GO:0048027: mRNA 5'-UTR binding	1.14E-03
37	GO:0016149: translation release factor activity, codon specific	1.14E-03
38	GO:0009882: blue light photoreceptor activity	1.14E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.51E-03
40	GO:0008453: alanine-glyoxylate transaminase activity	1.51E-03
41	GO:0004356: glutamate-ammonia ligase activity	1.93E-03
42	GO:0008725: DNA-3-methyladenine glycosylase activity	1.93E-03
43	GO:0005275: amine transmembrane transporter activity	1.93E-03
44	GO:0019901: protein kinase binding	2.09E-03
45	GO:0080030: methyl indole-3-acetate esterase activity	2.38E-03
46	GO:0102229: amylopectin maltohydrolase activity	2.38E-03
47	GO:0042578: phosphoric ester hydrolase activity	2.38E-03
48	GO:0051753: mannan synthase activity	2.86E-03
49	GO:0016161: beta-amylase activity	2.86E-03
50	GO:0009881: photoreceptor activity	3.36E-03
51	GO:0043295: glutathione binding	3.36E-03
52	GO:0016168: chlorophyll binding	3.40E-03
53	GO:0004564: beta-fructofuranosidase activity	3.90E-03
54	GO:0008135: translation factor activity, RNA binding	4.47E-03
55	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.47E-03
56	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.47E-03
57	GO:0004222: metalloendopeptidase activity	4.61E-03
58	GO:0003747: translation release factor activity	5.06E-03
59	GO:0004575: sucrose alpha-glucosidase activity	5.68E-03
60	GO:0008047: enzyme activator activity	6.32E-03
61	GO:0044183: protein binding involved in protein folding	6.98E-03
62	GO:0004860: protein kinase inhibitor activity	6.98E-03
63	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.98E-03
64	GO:0051537: 2 iron, 2 sulfur cluster binding	7.39E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.98E-03
66	GO:0004089: carbonate dehydratase activity	8.39E-03
67	GO:0031072: heat shock protein binding	8.39E-03
68	GO:0000155: phosphorelay sensor kinase activity	8.39E-03
69	GO:0005262: calcium channel activity	8.39E-03
70	GO:0004565: beta-galactosidase activity	8.39E-03
71	GO:0003824: catalytic activity	8.71E-03
72	GO:0008083: growth factor activity	9.13E-03
73	GO:0031409: pigment binding	1.07E-02
74	GO:0004176: ATP-dependent peptidase activity	1.32E-02
75	GO:0051082: unfolded protein binding	1.32E-02
76	GO:0016760: cellulose synthase (UDP-forming) activity	1.49E-02
77	GO:0022891: substrate-specific transmembrane transporter activity	1.49E-02
78	GO:0019843: rRNA binding	1.65E-02
79	GO:0047134: protein-disulfide reductase activity	1.68E-02
80	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.69E-02
81	GO:0009055: electron carrier activity	1.72E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	1.97E-02
83	GO:0016853: isomerase activity	1.97E-02
84	GO:0010181: FMN binding	1.97E-02
85	GO:0050662: coenzyme binding	1.97E-02
86	GO:0004872: receptor activity	2.07E-02
87	GO:0048038: quinone binding	2.17E-02
88	GO:0004518: nuclease activity	2.28E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.38E-02
90	GO:0016759: cellulose synthase activity	2.49E-02
91	GO:0008483: transaminase activity	2.60E-02
92	GO:0008237: metallopeptidase activity	2.60E-02
93	GO:0005200: structural constituent of cytoskeleton	2.60E-02
94	GO:0016597: amino acid binding	2.71E-02
95	GO:0008236: serine-type peptidase activity	3.29E-02
96	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.66E-02
97	GO:0050897: cobalt ion binding	3.78E-02
98	GO:0003746: translation elongation factor activity	4.03E-02
99	GO:0016740: transferase activity	4.13E-02
100	GO:0050661: NADP binding	4.43E-02
101	GO:0004364: glutathione transferase activity	4.69E-02
102	GO:0004185: serine-type carboxypeptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	1.54E-34
4	GO:0009570: chloroplast stroma	1.52E-15
5	GO:0009941: chloroplast envelope	4.38E-14
6	GO:0009535: chloroplast thylakoid membrane	5.06E-14
7	GO:0009543: chloroplast thylakoid lumen	3.38E-10
8	GO:0009579: thylakoid	2.44E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.18E-08
10	GO:0010319: stromule	6.46E-07
11	GO:0048046: apoplast	1.00E-06
12	GO:0009654: photosystem II oxygen evolving complex	1.88E-06
13	GO:0031977: thylakoid lumen	5.37E-06
14	GO:0005960: glycine cleavage complex	1.90E-05
15	GO:0009706: chloroplast inner membrane	3.25E-05
16	GO:0030095: chloroplast photosystem II	3.31E-05
17	GO:0009534: chloroplast thylakoid	1.74E-04
18	GO:0019898: extrinsic component of membrane	1.95E-04
19	GO:0031969: chloroplast membrane	3.94E-04
20	GO:0010287: plastoglobule	4.16E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.90E-04
22	GO:0042170: plastid membrane	4.90E-04
23	GO:0005775: vacuolar lumen	1.14E-03
24	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.51E-03
25	GO:0009523: photosystem II	2.09E-03
26	GO:0010168: ER body	2.38E-03
27	GO:0009539: photosystem II reaction center	4.47E-03
28	GO:0000325: plant-type vacuole	4.84E-03
29	GO:0005819: spindle	5.79E-03
30	GO:0031902: late endosome membrane	6.30E-03
31	GO:0016324: apical plasma membrane	6.32E-03
32	GO:0005765: lysosomal membrane	6.98E-03
33	GO:0048471: perinuclear region of cytoplasm	6.98E-03
34	GO:0016020: membrane	7.24E-03
35	GO:0031012: extracellular matrix	8.39E-03
36	GO:0019013: viral nucleocapsid	8.39E-03
37	GO:0030076: light-harvesting complex	9.90E-03
38	GO:0005871: kinesin complex	1.68E-02
39	GO:0005623: cell	1.69E-02
40	GO:0009522: photosystem I	1.97E-02
41	GO:0005759: mitochondrial matrix	2.07E-02
42	GO:0009504: cell plate	2.07E-02
43	GO:0005694: chromosome	2.28E-02
44	GO:0009295: nucleoid	2.60E-02
45	GO:0005778: peroxisomal membrane	2.60E-02
46	GO:0009536: plastid	3.33E-02
47	GO:0009707: chloroplast outer membrane	3.41E-02
48	GO:0009505: plant-type cell wall	3.44E-02
49	GO:0015934: large ribosomal subunit	3.78E-02