co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0016048: detection of temperature stimulus	0.00E+00
3	GO:0080094: response to trehalose-6-phosphate	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0090393: sepal giant cell development	0.00E+00
6	GO:0071555: cell wall organization	4.92E-08
7	GO:0045489: pectin biosynthetic process	7.33E-06
8	GO:0042546: cell wall biogenesis	7.60E-06
9	GO:0010411: xyloglucan metabolic process	3.46E-05
10	GO:0006546: glycine catabolic process	3.53E-05
11	GO:0016051: carbohydrate biosynthetic process	6.67E-05
12	GO:0000271: polysaccharide biosynthetic process	1.46E-04
13	GO:0007155: cell adhesion	1.94E-04
14	GO:0006169: adenosine salvage	2.22E-04
15	GO:0010442: guard cell morphogenesis	2.22E-04
16	GO:0071370: cellular response to gibberellin stimulus	2.22E-04
17	GO:0000066: mitochondrial ornithine transport	2.22E-04
18	GO:0019510: S-adenosylhomocysteine catabolic process	2.22E-04
19	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.31E-04
20	GO:0033353: S-adenosylmethionine cycle	4.95E-04
21	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.95E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.95E-04
23	GO:2000123: positive regulation of stomatal complex development	4.95E-04
24	GO:0010424: DNA methylation on cytosine within a CG sequence	4.95E-04
25	GO:0052541: plant-type cell wall cellulose metabolic process	4.95E-04
26	GO:0006695: cholesterol biosynthetic process	4.95E-04
27	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.95E-04
28	GO:0060919: auxin influx	4.95E-04
29	GO:0045490: pectin catabolic process	7.59E-04
30	GO:0015840: urea transport	8.05E-04
31	GO:0006000: fructose metabolic process	8.05E-04
32	GO:0070828: heterochromatin organization	8.05E-04
33	GO:0006833: water transport	8.53E-04
34	GO:0032877: positive regulation of DNA endoreduplication	1.15E-03
35	GO:0080170: hydrogen peroxide transmembrane transport	1.15E-03
36	GO:0051016: barbed-end actin filament capping	1.15E-03
37	GO:0009294: DNA mediated transformation	1.35E-03
38	GO:2000122: negative regulation of stomatal complex development	1.53E-03
39	GO:2000038: regulation of stomatal complex development	1.53E-03
40	GO:0010037: response to carbon dioxide	1.53E-03
41	GO:0015976: carbon utilization	1.53E-03
42	GO:0019464: glycine decarboxylation via glycine cleavage system	1.53E-03
43	GO:0009765: photosynthesis, light harvesting	1.53E-03
44	GO:0006085: acetyl-CoA biosynthetic process	1.53E-03
45	GO:0006749: glutathione metabolic process	1.53E-03
46	GO:0034220: ion transmembrane transport	1.71E-03
47	GO:0006342: chromatin silencing	1.84E-03
48	GO:0016123: xanthophyll biosynthetic process	1.95E-03
49	GO:0044209: AMP salvage	1.95E-03
50	GO:0010375: stomatal complex patterning	1.95E-03
51	GO:0016120: carotene biosynthetic process	1.95E-03
52	GO:0042742: defense response to bacterium	2.19E-03
53	GO:0071554: cell wall organization or biogenesis	2.26E-03
54	GO:0006796: phosphate-containing compound metabolic process	2.40E-03
55	GO:0010583: response to cyclopentenone	2.42E-03
56	GO:0009612: response to mechanical stimulus	2.89E-03
57	GO:0017148: negative regulation of translation	2.89E-03
58	GO:0009554: megasporogenesis	2.89E-03
59	GO:0010555: response to mannitol	2.89E-03
60	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.89E-03
61	GO:0007267: cell-cell signaling	2.91E-03
62	GO:0016126: sterol biosynthetic process	3.26E-03
63	GO:0009645: response to low light intensity stimulus	3.40E-03
64	GO:0006400: tRNA modification	3.40E-03
65	GO:0006402: mRNA catabolic process	3.94E-03
66	GO:0045010: actin nucleation	3.94E-03
67	GO:0052543: callose deposition in cell wall	3.94E-03
68	GO:0008610: lipid biosynthetic process	3.94E-03
69	GO:0009642: response to light intensity	3.94E-03
70	GO:0044030: regulation of DNA methylation	4.51E-03
71	GO:0009932: cell tip growth	4.51E-03
72	GO:0006002: fructose 6-phosphate metabolic process	4.51E-03
73	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.51E-03
74	GO:0007166: cell surface receptor signaling pathway	5.05E-03
75	GO:0033384: geranyl diphosphate biosynthetic process	5.11E-03
76	GO:0006754: ATP biosynthetic process	5.11E-03
77	GO:0048589: developmental growth	5.11E-03
78	GO:0045337: farnesyl diphosphate biosynthetic process	5.11E-03
79	GO:0006349: regulation of gene expression by genetic imprinting	5.74E-03
80	GO:0006839: mitochondrial transport	6.13E-03
81	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.38E-03
82	GO:0043069: negative regulation of programmed cell death	6.38E-03
83	GO:0048829: root cap development	6.38E-03
84	GO:0006631: fatty acid metabolic process	6.39E-03
85	GO:0010216: maintenance of DNA methylation	7.06E-03
86	GO:0000038: very long-chain fatty acid metabolic process	7.06E-03
87	GO:0006790: sulfur compound metabolic process	7.76E-03
88	GO:2000028: regulation of photoperiodism, flowering	8.48E-03
89	GO:0030036: actin cytoskeleton organization	8.48E-03
90	GO:0050826: response to freezing	8.48E-03
91	GO:0009725: response to hormone	8.48E-03
92	GO:0006094: gluconeogenesis	8.48E-03
93	GO:0005986: sucrose biosynthetic process	8.48E-03
94	GO:0019253: reductive pentose-phosphate cycle	9.23E-03
95	GO:0051603: proteolysis involved in cellular protein catabolic process	9.69E-03
96	GO:0080167: response to karrikin	9.77E-03
97	GO:0046854: phosphatidylinositol phosphorylation	1.00E-02
98	GO:0010167: response to nitrate	1.00E-02
99	GO:0005985: sucrose metabolic process	1.00E-02
100	GO:0006071: glycerol metabolic process	1.08E-02
101	GO:0019344: cysteine biosynthetic process	1.16E-02
102	GO:0007010: cytoskeleton organization	1.16E-02
103	GO:0010026: trichome differentiation	1.24E-02
104	GO:0007017: microtubule-based process	1.24E-02
105	GO:0055085: transmembrane transport	1.26E-02
106	GO:0042545: cell wall modification	1.30E-02
107	GO:0003333: amino acid transmembrane transport	1.33E-02
108	GO:0006730: one-carbon metabolic process	1.42E-02
109	GO:0016042: lipid catabolic process	1.55E-02
110	GO:0019722: calcium-mediated signaling	1.60E-02
111	GO:0016117: carotenoid biosynthetic process	1.70E-02
112	GO:0080022: primary root development	1.79E-02
113	GO:0000413: protein peptidyl-prolyl isomerization	1.79E-02
114	GO:0042335: cuticle development	1.79E-02
115	GO:0008360: regulation of cell shape	1.89E-02
116	GO:0007059: chromosome segregation	1.99E-02
117	GO:0019252: starch biosynthetic process	2.09E-02
118	GO:0006468: protein phosphorylation	2.10E-02
119	GO:0006633: fatty acid biosynthetic process	2.11E-02
120	GO:0016032: viral process	2.30E-02
121	GO:0009617: response to bacterium	2.76E-02
122	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.97E-02
123	GO:0009627: systemic acquired resistance	3.09E-02
124	GO:0042128: nitrate assimilation	3.09E-02
125	GO:0048767: root hair elongation	3.57E-02
126	GO:0009813: flavonoid biosynthetic process	3.57E-02
127	GO:0010311: lateral root formation	3.57E-02
128	GO:0009407: toxin catabolic process	3.70E-02
129	GO:0010119: regulation of stomatal movement	3.82E-02
130	GO:0009910: negative regulation of flower development	3.82E-02
131	GO:0006865: amino acid transport	3.95E-02
132	GO:0007049: cell cycle	3.99E-02
133	GO:0006810: transport	4.41E-02
134	GO:0005975: carbohydrate metabolic process	4.62E-02
135	GO:0046686: response to cadmium ion	4.80E-02
136	GO:0009926: auxin polar transport	4.88E-02
137	GO:0009744: response to sucrose	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
5	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.16E-05
8	GO:0046982: protein heterodimerization activity	3.36E-05
9	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.46E-05
10	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.94E-05
11	GO:0004001: adenosine kinase activity	2.22E-04
12	GO:0003838: sterol 24-C-methyltransferase activity	2.22E-04
13	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.22E-04
14	GO:0004013: adenosylhomocysteinase activity	2.22E-04
15	GO:0080132: fatty acid alpha-hydroxylase activity	2.22E-04
16	GO:0010313: phytochrome binding	2.22E-04
17	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.25E-04
18	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.09E-04
19	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	4.95E-04
20	GO:0004047: aminomethyltransferase activity	4.95E-04
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.95E-04
22	GO:0000064: L-ornithine transmembrane transporter activity	4.95E-04
23	GO:0048531: beta-1,3-galactosyltransferase activity	4.95E-04
24	GO:0005504: fatty acid binding	8.05E-04
25	GO:0016757: transferase activity, transferring glycosyl groups	1.08E-03
26	GO:0001872: (1->3)-beta-D-glucan binding	1.15E-03
27	GO:0003878: ATP citrate synthase activity	1.15E-03
28	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.15E-03
29	GO:0048027: mRNA 5'-UTR binding	1.15E-03
30	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.15E-03
31	GO:0030570: pectate lyase activity	1.35E-03
32	GO:0045430: chalcone isomerase activity	1.53E-03
33	GO:0015204: urea transmembrane transporter activity	1.53E-03
34	GO:0010328: auxin influx transmembrane transporter activity	1.53E-03
35	GO:0019901: protein kinase binding	2.12E-03
36	GO:0016462: pyrophosphatase activity	2.40E-03
37	GO:0042578: phosphoric ester hydrolase activity	2.40E-03
38	GO:0016759: cellulose synthase activity	2.74E-03
39	GO:0016758: transferase activity, transferring hexosyl groups	2.74E-03
40	GO:0051753: mannan synthase activity	2.89E-03
41	GO:0051920: peroxiredoxin activity	2.89E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.89E-03
43	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.89E-03
44	GO:0005200: structural constituent of cytoskeleton	2.91E-03
45	GO:0016413: O-acetyltransferase activity	3.08E-03
46	GO:0015250: water channel activity	3.26E-03
47	GO:0004427: inorganic diphosphatase activity	3.40E-03
48	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.90E-03
49	GO:0004564: beta-fructofuranosidase activity	3.94E-03
50	GO:0016209: antioxidant activity	3.94E-03
51	GO:0005507: copper ion binding	4.11E-03
52	GO:0003843: 1,3-beta-D-glucan synthase activity	4.51E-03
53	GO:0004672: protein kinase activity	4.67E-03
54	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.11E-03
55	GO:0004337: geranyltranstransferase activity	5.11E-03
56	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.11E-03
57	GO:0004575: sucrose alpha-glucosidase activity	5.74E-03
58	GO:0004185: serine-type carboxypeptidase activity	6.93E-03
59	GO:0004161: dimethylallyltranstransferase activity	7.06E-03
60	GO:0004860: protein kinase inhibitor activity	7.06E-03
61	GO:0004089: carbonate dehydratase activity	8.48E-03
62	GO:0004565: beta-galactosidase activity	8.48E-03
63	GO:0045330: aspartyl esterase activity	1.04E-02
64	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.08E-02
65	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.08E-02
66	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.08E-02
67	GO:0052689: carboxylic ester hydrolase activity	1.11E-02
68	GO:0004857: enzyme inhibitor activity	1.16E-02
69	GO:0004650: polygalacturonase activity	1.22E-02
70	GO:0030599: pectinesterase activity	1.26E-02
71	GO:0016829: lyase activity	1.81E-02
72	GO:0004872: receptor activity	2.09E-02
73	GO:0004518: nuclease activity	2.30E-02
74	GO:0051015: actin filament binding	2.41E-02
75	GO:0008483: transaminase activity	2.63E-02
76	GO:0030247: polysaccharide binding	3.20E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	3.65E-02
78	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.70E-02
79	GO:0003682: chromatin binding	3.78E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	4.47E-02
81	GO:0004674: protein serine/threonine kinase activity	4.64E-02
82	GO:0004364: glutathione transferase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005721: pericentric heterochromatin	0.00E+00
2	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
3	GO:0009505: plant-type cell wall	1.22E-11
4	GO:0048046: apoplast	4.12E-11
5	GO:0031225: anchored component of membrane	7.26E-11
6	GO:0046658: anchored component of plasma membrane	5.67E-09
7	GO:0005576: extracellular region	1.46E-08
8	GO:0005618: cell wall	4.16E-08
9	GO:0000786: nucleosome	1.08E-07
10	GO:0009506: plasmodesma	1.99E-07
11	GO:0000139: Golgi membrane	2.05E-06
12	GO:0009579: thylakoid	2.99E-05
13	GO:0005794: Golgi apparatus	9.03E-05
14	GO:0009570: chloroplast stroma	3.13E-04
15	GO:0005886: plasma membrane	4.51E-04
16	GO:0005773: vacuole	4.59E-04
17	GO:0000792: heterochromatin	4.95E-04
18	GO:0031977: thylakoid lumen	8.52E-04
19	GO:0009941: chloroplast envelope	9.08E-04
20	GO:0005960: glycine cleavage complex	1.15E-03
21	GO:0005775: vacuolar lumen	1.15E-03
22	GO:0009346: citrate lyase complex	1.15E-03
23	GO:0000790: nuclear chromatin	1.58E-03
24	GO:0016021: integral component of membrane	1.81E-03
25	GO:0010168: ER body	2.40E-03
26	GO:0042807: central vacuole	3.40E-03
27	GO:0009539: photosystem II reaction center	4.51E-03
28	GO:0000326: protein storage vacuole	4.51E-03
29	GO:0000148: 1,3-beta-D-glucan synthase complex	4.51E-03
30	GO:0000325: plant-type vacuole	4.91E-03
31	GO:0005802: trans-Golgi network	5.05E-03
32	GO:0045298: tubulin complex	5.11E-03
33	GO:0005876: spindle microtubule	5.74E-03
34	GO:0005768: endosome	6.32E-03
35	GO:0030176: integral component of endoplasmic reticulum membrane	1.00E-02
36	GO:0005875: microtubule associated complex	1.08E-02
37	GO:0009654: photosystem II oxygen evolving complex	1.24E-02
38	GO:0016020: membrane	1.46E-02
39	GO:0009543: chloroplast thylakoid lumen	1.67E-02
40	GO:0010319: stromule	2.63E-02
41	GO:0030529: intracellular ribonucleoprotein complex	2.85E-02
42	GO:0009534: chloroplast thylakoid	4.15E-02
43	GO:0009507: chloroplast	4.58E-02
44	GO:0031902: late endosome membrane	4.61E-02