GO Enrichment Analysis of Co-expressed Genes with
AT4G12420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0042335: cuticle development | 2.53E-07 |
| 6 | GO:0015976: carbon utilization | 2.78E-07 |
| 7 | GO:0000038: very long-chain fatty acid metabolic process | 2.44E-05 |
| 8 | GO:2000122: negative regulation of stomatal complex development | 4.46E-05 |
| 9 | GO:0010037: response to carbon dioxide | 4.46E-05 |
| 10 | GO:0010411: xyloglucan metabolic process | 5.07E-05 |
| 11 | GO:0006833: water transport | 6.61E-05 |
| 12 | GO:0010190: cytochrome b6f complex assembly | 1.04E-04 |
| 13 | GO:0006633: fatty acid biosynthetic process | 1.40E-04 |
| 14 | GO:0042546: cell wall biogenesis | 1.62E-04 |
| 15 | GO:0000413: protein peptidyl-prolyl isomerization | 1.93E-04 |
| 16 | GO:0060627: regulation of vesicle-mediated transport | 2.55E-04 |
| 17 | GO:0046520: sphingoid biosynthetic process | 2.55E-04 |
| 18 | GO:0010442: guard cell morphogenesis | 2.55E-04 |
| 19 | GO:0071370: cellular response to gibberellin stimulus | 2.55E-04 |
| 20 | GO:0042547: cell wall modification involved in multidimensional cell growth | 2.55E-04 |
| 21 | GO:0042371: vitamin K biosynthetic process | 2.55E-04 |
| 22 | GO:0071555: cell wall organization | 2.60E-04 |
| 23 | GO:0010583: response to cyclopentenone | 3.12E-04 |
| 24 | GO:2000123: positive regulation of stomatal complex development | 5.64E-04 |
| 25 | GO:0052541: plant-type cell wall cellulose metabolic process | 5.64E-04 |
| 26 | GO:0006695: cholesterol biosynthetic process | 5.64E-04 |
| 27 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 5.64E-04 |
| 28 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.17E-04 |
| 29 | GO:0015840: urea transport | 9.15E-04 |
| 30 | GO:0006518: peptide metabolic process | 9.15E-04 |
| 31 | GO:0010025: wax biosynthetic process | 1.03E-03 |
| 32 | GO:0019344: cysteine biosynthetic process | 1.14E-03 |
| 33 | GO:0009855: determination of bilateral symmetry | 1.31E-03 |
| 34 | GO:0007231: osmosensory signaling pathway | 1.31E-03 |
| 35 | GO:0006085: acetyl-CoA biosynthetic process | 1.75E-03 |
| 36 | GO:0033500: carbohydrate homeostasis | 1.75E-03 |
| 37 | GO:2000038: regulation of stomatal complex development | 1.75E-03 |
| 38 | GO:0006808: regulation of nitrogen utilization | 1.75E-03 |
| 39 | GO:0042254: ribosome biogenesis | 2.03E-03 |
| 40 | GO:0034220: ion transmembrane transport | 2.07E-03 |
| 41 | GO:0010375: stomatal complex patterning | 2.23E-03 |
| 42 | GO:0006796: phosphate-containing compound metabolic process | 2.75E-03 |
| 43 | GO:0006596: polyamine biosynthetic process | 2.75E-03 |
| 44 | GO:0048759: xylem vessel member cell differentiation | 2.75E-03 |
| 45 | GO:0042549: photosystem II stabilization | 2.75E-03 |
| 46 | GO:0009416: response to light stimulus | 3.14E-03 |
| 47 | GO:0042742: defense response to bacterium | 3.25E-03 |
| 48 | GO:0009955: adaxial/abaxial pattern specification | 3.30E-03 |
| 49 | GO:0080060: integument development | 3.30E-03 |
| 50 | GO:0010014: meristem initiation | 3.30E-03 |
| 51 | GO:0042372: phylloquinone biosynthetic process | 3.30E-03 |
| 52 | GO:0009612: response to mechanical stimulus | 3.30E-03 |
| 53 | GO:0006694: steroid biosynthetic process | 3.30E-03 |
| 54 | GO:0010555: response to mannitol | 3.30E-03 |
| 55 | GO:0015979: photosynthesis | 3.36E-03 |
| 56 | GO:0007267: cell-cell signaling | 3.54E-03 |
| 57 | GO:0030497: fatty acid elongation | 3.89E-03 |
| 58 | GO:0009645: response to low light intensity stimulus | 3.89E-03 |
| 59 | GO:0009610: response to symbiotic fungus | 3.89E-03 |
| 60 | GO:0016126: sterol biosynthetic process | 3.97E-03 |
| 61 | GO:0007155: cell adhesion | 4.52E-03 |
| 62 | GO:0009642: response to light intensity | 4.52E-03 |
| 63 | GO:0006402: mRNA catabolic process | 4.52E-03 |
| 64 | GO:0030091: protein repair | 4.52E-03 |
| 65 | GO:0009690: cytokinin metabolic process | 4.52E-03 |
| 66 | GO:0009808: lignin metabolic process | 5.18E-03 |
| 67 | GO:0045337: farnesyl diphosphate biosynthetic process | 5.86E-03 |
| 68 | GO:0033384: geranyl diphosphate biosynthetic process | 5.86E-03 |
| 69 | GO:0009409: response to cold | 5.90E-03 |
| 70 | GO:0010119: regulation of stomatal movement | 5.99E-03 |
| 71 | GO:0042761: very long-chain fatty acid biosynthetic process | 6.58E-03 |
| 72 | GO:0016573: histone acetylation | 6.58E-03 |
| 73 | GO:0006810: transport | 6.92E-03 |
| 74 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 7.33E-03 |
| 75 | GO:0006535: cysteine biosynthetic process from serine | 7.33E-03 |
| 76 | GO:0043069: negative regulation of programmed cell death | 7.33E-03 |
| 77 | GO:0048829: root cap development | 7.33E-03 |
| 78 | GO:0006631: fatty acid metabolic process | 7.80E-03 |
| 79 | GO:0006816: calcium ion transport | 8.11E-03 |
| 80 | GO:0009773: photosynthetic electron transport in photosystem I | 8.11E-03 |
| 81 | GO:0019684: photosynthesis, light reaction | 8.11E-03 |
| 82 | GO:0010072: primary shoot apical meristem specification | 8.11E-03 |
| 83 | GO:0009089: lysine biosynthetic process via diaminopimelate | 8.11E-03 |
| 84 | GO:1903507: negative regulation of nucleic acid-templated transcription | 8.11E-03 |
| 85 | GO:0006790: sulfur compound metabolic process | 8.92E-03 |
| 86 | GO:0009826: unidimensional cell growth | 9.12E-03 |
| 87 | GO:2000028: regulation of photoperiodism, flowering | 9.75E-03 |
| 88 | GO:0009725: response to hormone | 9.75E-03 |
| 89 | GO:0009735: response to cytokinin | 1.04E-02 |
| 90 | GO:0042538: hyperosmotic salinity response | 1.06E-02 |
| 91 | GO:0010143: cutin biosynthetic process | 1.06E-02 |
| 92 | GO:0010020: chloroplast fission | 1.06E-02 |
| 93 | GO:0010207: photosystem II assembly | 1.06E-02 |
| 94 | GO:0010167: response to nitrate | 1.15E-02 |
| 95 | GO:0005985: sucrose metabolic process | 1.15E-02 |
| 96 | GO:0070588: calcium ion transmembrane transport | 1.15E-02 |
| 97 | GO:0046854: phosphatidylinositol phosphorylation | 1.15E-02 |
| 98 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.24E-02 |
| 99 | GO:0006071: glycerol metabolic process | 1.24E-02 |
| 100 | GO:0019762: glucosinolate catabolic process | 1.24E-02 |
| 101 | GO:0000027: ribosomal large subunit assembly | 1.34E-02 |
| 102 | GO:0006338: chromatin remodeling | 1.34E-02 |
| 103 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.34E-02 |
| 104 | GO:0006418: tRNA aminoacylation for protein translation | 1.43E-02 |
| 105 | GO:0010026: trichome differentiation | 1.43E-02 |
| 106 | GO:0007017: microtubule-based process | 1.43E-02 |
| 107 | GO:0003333: amino acid transmembrane transport | 1.53E-02 |
| 108 | GO:0009814: defense response, incompatible interaction | 1.64E-02 |
| 109 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.64E-02 |
| 110 | GO:0006284: base-excision repair | 1.85E-02 |
| 111 | GO:0019722: calcium-mediated signaling | 1.85E-02 |
| 112 | GO:0000271: polysaccharide biosynthetic process | 2.07E-02 |
| 113 | GO:0080022: primary root development | 2.07E-02 |
| 114 | GO:0010087: phloem or xylem histogenesis | 2.07E-02 |
| 115 | GO:0045489: pectin biosynthetic process | 2.18E-02 |
| 116 | GO:0048868: pollen tube development | 2.18E-02 |
| 117 | GO:0071554: cell wall organization or biogenesis | 2.53E-02 |
| 118 | GO:0016132: brassinosteroid biosynthetic process | 2.53E-02 |
| 119 | GO:0032502: developmental process | 2.65E-02 |
| 120 | GO:1901657: glycosyl compound metabolic process | 2.78E-02 |
| 121 | GO:0045490: pectin catabolic process | 2.83E-02 |
| 122 | GO:0006412: translation | 3.25E-02 |
| 123 | GO:0042128: nitrate assimilation | 3.56E-02 |
| 124 | GO:0009627: systemic acquired resistance | 3.56E-02 |
| 125 | GO:0016311: dephosphorylation | 3.83E-02 |
| 126 | GO:0009817: defense response to fungus, incompatible interaction | 3.97E-02 |
| 127 | GO:0048481: plant ovule development | 3.97E-02 |
| 128 | GO:0000160: phosphorelay signal transduction system | 4.12E-02 |
| 129 | GO:0009834: plant-type secondary cell wall biogenesis | 4.26E-02 |
| 130 | GO:0009407: toxin catabolic process | 4.26E-02 |
| 131 | GO:0006865: amino acid transport | 4.55E-02 |
| 132 | GO:0009867: jasmonic acid mediated signaling pathway | 4.70E-02 |
| 133 | GO:0016051: carbohydrate biosynthetic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 2 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 3 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 6 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 7 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 8 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 9 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 10 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.74E-05 |
| 11 | GO:0004089: carbonate dehydratase activity | 3.79E-05 |
| 12 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 5.07E-05 |
| 13 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.61E-05 |
| 14 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.61E-05 |
| 15 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.61E-05 |
| 16 | GO:0009922: fatty acid elongase activity | 7.11E-05 |
| 17 | GO:0019843: rRNA binding | 8.66E-05 |
| 18 | GO:0000170: sphingosine hydroxylase activity | 2.55E-04 |
| 19 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.55E-04 |
| 20 | GO:0003838: sterol 24-C-methyltransferase activity | 2.55E-04 |
| 21 | GO:0015200: methylammonium transmembrane transporter activity | 2.55E-04 |
| 22 | GO:0016768: spermine synthase activity | 2.55E-04 |
| 23 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.65E-04 |
| 24 | GO:0015250: water channel activity | 4.65E-04 |
| 25 | GO:0042284: sphingolipid delta-4 desaturase activity | 5.64E-04 |
| 26 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.64E-04 |
| 27 | GO:0050017: L-3-cyanoalanine synthase activity | 5.64E-04 |
| 28 | GO:0042389: omega-3 fatty acid desaturase activity | 5.64E-04 |
| 29 | GO:0070330: aromatase activity | 9.15E-04 |
| 30 | GO:0017150: tRNA dihydrouridine synthase activity | 9.15E-04 |
| 31 | GO:0050734: hydroxycinnamoyltransferase activity | 9.15E-04 |
| 32 | GO:0002161: aminoacyl-tRNA editing activity | 9.15E-04 |
| 33 | GO:0030267: glyoxylate reductase (NADP) activity | 9.15E-04 |
| 34 | GO:0003878: ATP citrate synthase activity | 1.31E-03 |
| 35 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.31E-03 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.46E-03 |
| 37 | GO:0010328: auxin influx transmembrane transporter activity | 1.75E-03 |
| 38 | GO:0015204: urea transmembrane transporter activity | 1.75E-03 |
| 39 | GO:0018685: alkane 1-monooxygenase activity | 2.23E-03 |
| 40 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.23E-03 |
| 41 | GO:0016208: AMP binding | 2.75E-03 |
| 42 | GO:0016462: pyrophosphatase activity | 2.75E-03 |
| 43 | GO:0008519: ammonium transmembrane transporter activity | 2.75E-03 |
| 44 | GO:0004124: cysteine synthase activity | 3.30E-03 |
| 45 | GO:0051920: peroxiredoxin activity | 3.30E-03 |
| 46 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 3.30E-03 |
| 47 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.30E-03 |
| 48 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.30E-03 |
| 49 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.54E-03 |
| 50 | GO:0004427: inorganic diphosphatase activity | 3.89E-03 |
| 51 | GO:0003735: structural constituent of ribosome | 4.27E-03 |
| 52 | GO:0004564: beta-fructofuranosidase activity | 4.52E-03 |
| 53 | GO:0016209: antioxidant activity | 4.52E-03 |
| 54 | GO:0102483: scopolin beta-glucosidase activity | 4.68E-03 |
| 55 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 5.18E-03 |
| 56 | GO:0004337: geranyltranstransferase activity | 5.86E-03 |
| 57 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.86E-03 |
| 58 | GO:0004575: sucrose alpha-glucosidase activity | 6.58E-03 |
| 59 | GO:0003993: acid phosphatase activity | 6.86E-03 |
| 60 | GO:0008422: beta-glucosidase activity | 7.17E-03 |
| 61 | GO:0042802: identical protein binding | 7.45E-03 |
| 62 | GO:0004161: dimethylallyltranstransferase activity | 8.11E-03 |
| 63 | GO:0008289: lipid binding | 8.21E-03 |
| 64 | GO:0000049: tRNA binding | 8.92E-03 |
| 65 | GO:0005262: calcium channel activity | 9.75E-03 |
| 66 | GO:0004857: enzyme inhibitor activity | 1.34E-02 |
| 67 | GO:0003714: transcription corepressor activity | 1.34E-02 |
| 68 | GO:0052689: carboxylic ester hydrolase activity | 1.43E-02 |
| 69 | GO:0004650: polygalacturonase activity | 1.49E-02 |
| 70 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.53E-02 |
| 71 | GO:0030599: pectinesterase activity | 1.54E-02 |
| 72 | GO:0016740: transferase activity | 1.60E-02 |
| 73 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.64E-02 |
| 74 | GO:0030570: pectate lyase activity | 1.74E-02 |
| 75 | GO:0008514: organic anion transmembrane transporter activity | 1.85E-02 |
| 76 | GO:0004812: aminoacyl-tRNA ligase activity | 1.95E-02 |
| 77 | GO:0003924: GTPase activity | 2.06E-02 |
| 78 | GO:0004672: protein kinase activity | 2.08E-02 |
| 79 | GO:0019901: protein kinase binding | 2.41E-02 |
| 80 | GO:0000156: phosphorelay response regulator activity | 2.78E-02 |
| 81 | GO:0016759: cellulose synthase activity | 2.90E-02 |
| 82 | GO:0005200: structural constituent of cytoskeleton | 3.03E-02 |
| 83 | GO:0016413: O-acetyltransferase activity | 3.16E-02 |
| 84 | GO:0003824: catalytic activity | 3.87E-02 |
| 85 | GO:0005215: transporter activity | 3.91E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 4.26E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.41E-02 |
| 88 | GO:0030145: manganese ion binding | 4.41E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048046: apoplast | 2.28E-10 |
| 2 | GO:0031977: thylakoid lumen | 1.37E-08 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.80E-08 |
| 4 | GO:0009505: plant-type cell wall | 5.70E-08 |
| 5 | GO:0009579: thylakoid | 9.41E-08 |
| 6 | GO:0009570: chloroplast stroma | 1.46E-07 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 4.48E-07 |
| 8 | GO:0009507: chloroplast | 8.45E-07 |
| 9 | GO:0046658: anchored component of plasma membrane | 3.57E-06 |
| 10 | GO:0005618: cell wall | 5.56E-06 |
| 11 | GO:0005576: extracellular region | 6.16E-06 |
| 12 | GO:0009941: chloroplast envelope | 1.36E-05 |
| 13 | GO:0031225: anchored component of membrane | 2.26E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 9.04E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 2.61E-04 |
| 16 | GO:0005773: vacuole | 3.06E-04 |
| 17 | GO:0009506: plasmodesma | 4.33E-04 |
| 18 | GO:0042170: plastid membrane | 5.64E-04 |
| 19 | GO:0016020: membrane | 6.22E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 8.30E-04 |
| 21 | GO:0005875: microtubule associated complex | 1.03E-03 |
| 22 | GO:0005775: vacuolar lumen | 1.31E-03 |
| 23 | GO:0009346: citrate lyase complex | 1.31E-03 |
| 24 | GO:0010319: stromule | 3.54E-03 |
| 25 | GO:0000123: histone acetyltransferase complex | 3.89E-03 |
| 26 | GO:0042807: central vacuole | 3.89E-03 |
| 27 | GO:0000326: protein storage vacuole | 5.18E-03 |
| 28 | GO:0045298: tubulin complex | 5.86E-03 |
| 29 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.86E-03 |
| 30 | GO:0005887: integral component of plasma membrane | 7.91E-03 |
| 31 | GO:0005886: plasma membrane | 8.06E-03 |
| 32 | GO:0000311: plastid large ribosomal subunit | 8.92E-03 |
| 33 | GO:0031012: extracellular matrix | 9.75E-03 |
| 34 | GO:0030659: cytoplasmic vesicle membrane | 1.06E-02 |
| 35 | GO:0022626: cytosolic ribosome | 1.11E-02 |
| 36 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.15E-02 |
| 37 | GO:0005840: ribosome | 1.17E-02 |
| 38 | GO:0042651: thylakoid membrane | 1.43E-02 |
| 39 | GO:0009532: plastid stroma | 1.53E-02 |
| 40 | GO:0009534: chloroplast thylakoid | 1.58E-02 |
| 41 | GO:0000139: Golgi membrane | 1.81E-02 |
| 42 | GO:0005789: endoplasmic reticulum membrane | 2.23E-02 |
| 43 | GO:0005802: trans-Golgi network | 2.40E-02 |
| 44 | GO:0005783: endoplasmic reticulum | 2.62E-02 |
| 45 | GO:0005768: endosome | 2.90E-02 |
| 46 | GO:0005778: peroxisomal membrane | 3.03E-02 |
| 47 | GO:0030529: intracellular ribonucleoprotein complex | 3.29E-02 |
| 48 | GO:0005774: vacuolar membrane | 3.54E-02 |
| 49 | GO:0000325: plant-type vacuole | 4.41E-02 |