Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006848: pyruvate transport0.00E+00
2GO:0043171: peptide catabolic process0.00E+00
3GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening0.00E+00
4GO:0010378: temperature compensation of the circadian clock0.00E+00
5GO:0000390: spliceosomal complex disassembly0.00E+00
6GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
7GO:0048867: stem cell fate determination0.00E+00
8GO:0032012: regulation of ARF protein signal transduction8.71E-07
9GO:0000380: alternative mRNA splicing, via spliceosome6.77E-06
10GO:0007623: circadian rhythm3.96E-05
11GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic6.26E-05
12GO:0009609: response to symbiotic bacterium6.26E-05
13GO:0032958: inositol phosphate biosynthetic process6.26E-05
14GO:0009409: response to cold1.04E-04
15GO:0009846: pollen germination1.31E-04
16GO:0010353: response to trehalose1.52E-04
17GO:0015914: phospholipid transport1.52E-04
18GO:0032509: endosome transport via multivesicular body sorting pathway1.52E-04
19GO:0035542: regulation of SNARE complex assembly1.52E-04
20GO:0045948: positive regulation of translational initiation1.52E-04
21GO:0016197: endosomal transport1.52E-04
22GO:0048209: regulation of vesicle targeting, to, from or within Golgi1.52E-04
23GO:0001736: establishment of planar polarity1.52E-04
24GO:0042256: mature ribosome assembly2.57E-04
25GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.57E-04
26GO:0042752: regulation of circadian rhythm3.73E-04
27GO:0006020: inositol metabolic process3.73E-04
28GO:0051639: actin filament network formation3.73E-04
29GO:0080119: ER body organization3.73E-04
30GO:0051601: exocyst localization3.73E-04
31GO:0006646: phosphatidylethanolamine biosynthetic process4.99E-04
32GO:0015743: malate transport4.99E-04
33GO:0051764: actin crosslink formation4.99E-04
34GO:0048578: positive regulation of long-day photoperiodism, flowering6.32E-04
35GO:0006656: phosphatidylcholine biosynthetic process6.32E-04
36GO:0010043: response to zinc ion9.06E-04
37GO:0006970: response to osmotic stress9.13E-04
38GO:0009861: jasmonic acid and ethylene-dependent systemic resistance9.20E-04
39GO:0010555: response to mannitol9.20E-04
40GO:0000911: cytokinesis by cell plate formation9.20E-04
41GO:0009942: longitudinal axis specification9.20E-04
42GO:0009637: response to blue light9.88E-04
43GO:0045087: innate immune response9.88E-04
44GO:0006401: RNA catabolic process1.07E-03
45GO:0009610: response to symbiotic fungus1.07E-03
46GO:1902074: response to salt1.07E-03
47GO:0006897: endocytosis1.16E-03
48GO:0042542: response to hydrogen peroxide1.21E-03
49GO:0007155: cell adhesion1.24E-03
50GO:0006875: cellular metal ion homeostasis1.24E-03
51GO:0032508: DNA duplex unwinding1.24E-03
52GO:0009932: cell tip growth1.41E-03
53GO:0009880: embryonic pattern specification1.41E-03
54GO:0060321: acceptance of pollen1.41E-03
55GO:0001510: RNA methylation1.41E-03
56GO:0006367: transcription initiation from RNA polymerase II promoter1.41E-03
57GO:0005982: starch metabolic process1.77E-03
58GO:0090332: stomatal closure1.77E-03
59GO:2000280: regulation of root development1.77E-03
60GO:0009970: cellular response to sulfate starvation1.96E-03
61GO:0006995: cellular response to nitrogen starvation1.96E-03
62GO:0048765: root hair cell differentiation2.17E-03
63GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.37E-03
64GO:0005983: starch catabolic process2.37E-03
65GO:0010152: pollen maturation2.37E-03
66GO:0030036: actin cytoskeleton organization2.58E-03
67GO:0010102: lateral root morphogenesis2.58E-03
68GO:0010540: basipetal auxin transport2.80E-03
69GO:0009651: response to salt stress2.92E-03
70GO:0007033: vacuole organization3.03E-03
71GO:0009908: flower development3.20E-03
72GO:0051017: actin filament bundle assembly3.49E-03
73GO:0006406: mRNA export from nucleus3.49E-03
74GO:0010073: meristem maintenance3.74E-03
75GO:0006874: cellular calcium ion homeostasis3.74E-03
76GO:0009695: jasmonic acid biosynthetic process3.74E-03
77GO:0016036: cellular response to phosphate starvation3.79E-03
78GO:0009269: response to desiccation3.98E-03
79GO:0042147: retrograde transport, endosome to Golgi5.03E-03
80GO:0010087: phloem or xylem histogenesis5.31E-03
81GO:0010501: RNA secondary structure unwinding5.31E-03
82GO:0000413: protein peptidyl-prolyl isomerization5.31E-03
83GO:0006814: sodium ion transport5.88E-03
84GO:0009826: unidimensional cell growth6.04E-03
85GO:0008654: phospholipid biosynthetic process6.17E-03
86GO:0000302: response to reactive oxygen species6.46E-03
87GO:0006891: intra-Golgi vesicle-mediated transport6.46E-03
88GO:0006635: fatty acid beta-oxidation6.46E-03
89GO:0009860: pollen tube growth6.75E-03
90GO:0071805: potassium ion transmembrane transport7.70E-03
91GO:0009911: positive regulation of flower development8.35E-03
92GO:0009414: response to water deprivation8.62E-03
93GO:0009788: negative regulation of abscisic acid-activated signaling pathway8.68E-03
94GO:0048573: photoperiodism, flowering9.36E-03
95GO:0006950: response to stress9.36E-03
96GO:0006886: intracellular protein transport9.61E-03
97GO:0016049: cell growth9.70E-03
98GO:0009817: defense response to fungus, incompatible interaction1.01E-02
99GO:0018298: protein-chromophore linkage1.01E-02
100GO:0010311: lateral root formation1.04E-02
101GO:0006811: ion transport1.08E-02
102GO:0010218: response to far red light1.08E-02
103GO:0009631: cold acclimation1.11E-02
104GO:0010119: regulation of stomatal movement1.11E-02
105GO:0016051: carbohydrate biosynthetic process1.19E-02
106GO:0015031: protein transport1.21E-02
107GO:0006887: exocytosis1.34E-02
108GO:0009926: auxin polar transport1.42E-02
109GO:0042538: hyperosmotic salinity response1.67E-02
110GO:0006812: cation transport1.67E-02
111GO:0006364: rRNA processing1.75E-02
112GO:0009585: red, far-red light phototransduction1.75E-02
113GO:0006813: potassium ion transport1.75E-02
114GO:0009735: response to cytokinin1.87E-02
115GO:0006417: regulation of translation1.89E-02
116GO:0009742: brassinosteroid mediated signaling pathway2.35E-02
117GO:0000398: mRNA splicing, via spliceosome2.50E-02
118GO:0009845: seed germination2.80E-02
119GO:0042744: hydrogen peroxide catabolic process2.90E-02
120GO:0009790: embryo development2.95E-02
121GO:0006633: fatty acid biosynthetic process3.11E-02
122GO:0006413: translational initiation3.17E-02
123GO:0010150: leaf senescence3.33E-02
124GO:0010228: vegetative to reproductive phase transition of meristem3.44E-02
125GO:0010468: regulation of gene expression3.77E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:1990446: U1 snRNP binding0.00E+00
3GO:0010292: GTP:GDP antiporter activity0.00E+00
4GO:0005086: ARF guanyl-nucleotide exchange factor activity4.03E-06
5GO:0033857: diphosphoinositol-pentakisphosphate kinase activity6.26E-05
6GO:0000829: inositol heptakisphosphate kinase activity6.26E-05
7GO:0010013: N-1-naphthylphthalamic acid binding6.26E-05
8GO:0050521: alpha-glucan, water dikinase activity6.26E-05
9GO:0008692: 3-hydroxybutyryl-CoA epimerase activity6.26E-05
10GO:0000828: inositol hexakisphosphate kinase activity6.26E-05
11GO:0070006: metalloaminopeptidase activity6.26E-05
12GO:0001047: core promoter binding1.52E-04
13GO:0004609: phosphatidylserine decarboxylase activity1.52E-04
14GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity1.52E-04
15GO:0019829: cation-transporting ATPase activity2.57E-04
16GO:0050833: pyruvate transmembrane transporter activity2.57E-04
17GO:0004096: catalase activity2.57E-04
18GO:0004165: dodecenoyl-CoA delta-isomerase activity3.73E-04
19GO:0004300: enoyl-CoA hydratase activity3.73E-04
20GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity3.73E-04
21GO:0008526: phosphatidylinositol transporter activity4.99E-04
22GO:0005253: anion channel activity4.99E-04
23GO:0042277: peptide binding4.99E-04
24GO:0045300: acyl-[acyl-carrier-protein] desaturase activity6.32E-04
25GO:2001070: starch binding7.73E-04
26GO:0015562: efflux transmembrane transporter activity7.73E-04
27GO:0000293: ferric-chelate reductase activity7.73E-04
28GO:0031369: translation initiation factor binding7.73E-04
29GO:0003950: NAD+ ADP-ribosyltransferase activity9.20E-04
30GO:0003730: mRNA 3'-UTR binding9.20E-04
31GO:0003697: single-stranded DNA binding9.88E-04
32GO:0009881: photoreceptor activity1.07E-03
33GO:0015140: malate transmembrane transporter activity1.07E-03
34GO:0004714: transmembrane receptor protein tyrosine kinase activity1.24E-03
35GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.96E-03
36GO:0015020: glucuronosyltransferase activity1.96E-03
37GO:0004177: aminopeptidase activity2.17E-03
38GO:0015386: potassium:proton antiporter activity2.17E-03
39GO:0019888: protein phosphatase regulator activity2.58E-03
40GO:0005388: calcium-transporting ATPase activity2.58E-03
41GO:0000175: 3'-5'-exoribonuclease activity2.58E-03
42GO:0003729: mRNA binding3.28E-03
43GO:0043424: protein histidine kinase binding3.74E-03
44GO:0015079: potassium ion transmembrane transporter activity3.74E-03
45GO:0008324: cation transmembrane transporter activity3.74E-03
46GO:0003723: RNA binding3.86E-03
47GO:0004540: ribonuclease activity3.98E-03
48GO:0003727: single-stranded RNA binding4.76E-03
49GO:0051015: actin filament binding7.07E-03
50GO:0015385: sodium:proton antiporter activity7.07E-03
51GO:0008375: acetylglucosaminyltransferase activity9.01E-03
52GO:0050897: cobalt ion binding1.11E-02
53GO:0000149: SNARE binding1.26E-02
54GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.58E-02
55GO:0005515: protein binding1.64E-02
56GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.75E-02
57GO:0003690: double-stranded DNA binding1.80E-02
58GO:0003779: actin binding2.21E-02
59GO:0008026: ATP-dependent helicase activity2.35E-02
60GO:0008565: protein transporter activity3.01E-02
61GO:0015297: antiporter activity3.22E-02
62GO:0003743: translation initiation factor activity3.72E-02
63GO:0005509: calcium ion binding3.81E-02
64GO:0042802: identical protein binding3.95E-02
65GO:0008168: methyltransferase activity4.42E-02
RankGO TermAdjusted P value
1GO:0031981: nuclear lumen0.00E+00
2GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
3GO:0005777: peroxisome1.14E-04
4GO:0030897: HOPS complex1.52E-04
5GO:0043036: starch grain1.52E-04
6GO:0032432: actin filament bundle3.73E-04
7GO:0000932: P-body6.12E-04
8GO:0000178: exosome (RNase complex)6.32E-04
9GO:0005851: eukaryotic translation initiation factor 2B complex7.73E-04
10GO:0016363: nuclear matrix9.20E-04
11GO:0031090: organelle membrane1.58E-03
12GO:0010008: endosome membrane2.04E-03
13GO:0000159: protein phosphatase type 2A complex2.17E-03
14GO:0005765: lysosomal membrane2.17E-03
15GO:0005884: actin filament2.17E-03
16GO:0005665: DNA-directed RNA polymerase II, core complex2.37E-03
17GO:0005795: Golgi stack3.03E-03
18GO:0043234: protein complex3.26E-03
19GO:0009705: plant-type vacuole membrane4.06E-03
20GO:0000145: exocyst6.76E-03
21GO:0005783: endoplasmic reticulum1.05E-02
22GO:0031902: late endosome membrane1.34E-02
23GO:0005618: cell wall1.45E-02
24GO:0005856: cytoskeleton1.54E-02
25GO:0031966: mitochondrial membrane1.67E-02
26GO:0005654: nucleoplasm2.60E-02
27GO:0009524: phragmoplast2.75E-02
28GO:0005886: plasma membrane2.90E-02
29GO:0009570: chloroplast stroma3.05E-02
30GO:0009506: plasmodesma3.11E-02
31GO:0005802: trans-Golgi network3.28E-02
32GO:0005829: cytosol3.60E-02
33GO:0005622: intracellular3.63E-02
34GO:0005768: endosome3.72E-02
35GO:0048046: apoplast4.49E-02
36GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.84E-02
Gene type



Gene DE type