Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly0.00E+00
2GO:0009991: response to extracellular stimulus0.00E+00
3GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0010111: glyoxysome organization0.00E+00
6GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
7GO:0006105: succinate metabolic process0.00E+00
8GO:0019484: beta-alanine catabolic process0.00E+00
9GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
10GO:0070291: N-acylethanolamine metabolic process0.00E+00
11GO:0019481: L-alanine catabolic process, by transamination0.00E+00
12GO:0000188: inactivation of MAPK activity0.00E+00
13GO:0016236: macroautophagy0.00E+00
14GO:0009399: nitrogen fixation1.93E-05
15GO:0006014: D-ribose metabolic process8.30E-05
16GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly8.30E-05
17GO:0009738: abscisic acid-activated signaling pathway1.01E-04
18GO:0006635: fatty acid beta-oxidation2.19E-04
19GO:0098702: adenine import across plasma membrane2.22E-04
20GO:0046167: glycerol-3-phosphate biosynthetic process2.22E-04
21GO:0035266: meristem growth2.22E-04
22GO:0098710: guanine import across plasma membrane2.22E-04
23GO:0009450: gamma-aminobutyric acid catabolic process2.22E-04
24GO:0007292: female gamete generation2.22E-04
25GO:0019628: urate catabolic process2.22E-04
26GO:0030242: pexophagy2.22E-04
27GO:0000303: response to superoxide2.22E-04
28GO:0010036: response to boron-containing substance2.22E-04
29GO:0009865: pollen tube adhesion2.22E-04
30GO:0035344: hypoxanthine transport2.22E-04
31GO:0006540: glutamate decarboxylation to succinate2.22E-04
32GO:0010265: SCF complex assembly2.22E-04
33GO:0098721: uracil import across plasma membrane2.22E-04
34GO:0006144: purine nucleobase metabolic process2.22E-04
35GO:1900424: regulation of defense response to bacterium2.22E-04
36GO:0006970: response to osmotic stress3.11E-04
37GO:0008202: steroid metabolic process3.46E-04
38GO:0048829: root cap development4.05E-04
39GO:0007064: mitotic sister chromatid cohesion4.05E-04
40GO:0019395: fatty acid oxidation4.95E-04
41GO:0010033: response to organic substance4.95E-04
42GO:0006641: triglyceride metabolic process4.95E-04
43GO:0080029: cellular response to boron-containing substance levels4.95E-04
44GO:0051788: response to misfolded protein4.95E-04
45GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine4.95E-04
46GO:0007154: cell communication4.95E-04
47GO:0019441: tryptophan catabolic process to kynurenine4.95E-04
48GO:0051258: protein polymerization4.95E-04
49GO:0034243: regulation of transcription elongation from RNA polymerase II promoter4.95E-04
50GO:0012501: programmed cell death5.37E-04
51GO:0009867: jasmonic acid mediated signaling pathway6.86E-04
52GO:0010150: leaf senescence7.59E-04
53GO:0060968: regulation of gene silencing8.05E-04
54GO:0032786: positive regulation of DNA-templated transcription, elongation8.05E-04
55GO:0019563: glycerol catabolic process8.05E-04
56GO:0010359: regulation of anion channel activity8.05E-04
57GO:0061158: 3'-UTR-mediated mRNA destabilization8.05E-04
58GO:0006631: fatty acid metabolic process8.52E-04
59GO:0046713: borate transport1.15E-03
60GO:0048194: Golgi vesicle budding1.15E-03
61GO:0006020: inositol metabolic process1.15E-03
62GO:0006072: glycerol-3-phosphate metabolic process1.15E-03
63GO:0006809: nitric oxide biosynthetic process1.15E-03
64GO:0015700: arsenite transport1.15E-03
65GO:0030433: ubiquitin-dependent ERAD pathway1.24E-03
66GO:0006468: protein phosphorylation1.40E-03
67GO:0006542: glutamine biosynthetic process1.53E-03
68GO:0033320: UDP-D-xylose biosynthetic process1.53E-03
69GO:0006536: glutamate metabolic process1.53E-03
70GO:0045324: late endosome to vacuole transport1.53E-03
71GO:0042594: response to starvation1.53E-03
72GO:0010508: positive regulation of autophagy1.53E-03
73GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.53E-03
74GO:0010188: response to microbial phytotoxin1.53E-03
75GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.58E-03
76GO:0046686: response to cadmium ion1.61E-03
77GO:0010154: fruit development1.84E-03
78GO:0018344: protein geranylgeranylation1.95E-03
79GO:0010225: response to UV-C1.95E-03
80GO:0005513: detection of calcium ion1.95E-03
81GO:0006623: protein targeting to vacuole2.12E-03
82GO:0019252: starch biosynthetic process2.12E-03
83GO:0006979: response to oxidative stress2.22E-03
84GO:0046777: protein autophosphorylation2.24E-03
85GO:0048827: phyllome development2.40E-03
86GO:0048232: male gamete generation2.40E-03
87GO:0043248: proteasome assembly2.40E-03
88GO:0070814: hydrogen sulfide biosynthetic process2.40E-03
89GO:0042732: D-xylose metabolic process2.40E-03
90GO:1902456: regulation of stomatal opening2.40E-03
91GO:0010358: leaf shaping2.40E-03
92GO:0009267: cellular response to starvation2.40E-03
93GO:0045454: cell redox homeostasis2.67E-03
94GO:0006914: autophagy2.74E-03
95GO:0009612: response to mechanical stimulus2.89E-03
96GO:0033962: cytoplasmic mRNA processing body assembly2.89E-03
97GO:0017148: negative regulation of translation2.89E-03
98GO:0048280: vesicle fusion with Golgi apparatus2.89E-03
99GO:0009845: seed germination3.13E-03
100GO:0046470: phosphatidylcholine metabolic process3.40E-03
101GO:0070370: cellular heat acclimation3.40E-03
102GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.40E-03
103GO:0071669: plant-type cell wall organization or biogenesis3.40E-03
104GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.45E-03
105GO:0006633: fatty acid biosynthetic process3.78E-03
106GO:0006950: response to stress3.84E-03
107GO:0048364: root development3.91E-03
108GO:0009819: drought recovery3.94E-03
109GO:0006605: protein targeting3.94E-03
110GO:0010078: maintenance of root meristem identity3.94E-03
111GO:1900150: regulation of defense response to fungus3.94E-03
112GO:0010311: lateral root formation4.46E-03
113GO:2000031: regulation of salicylic acid mediated signaling pathway4.51E-03
114GO:0006526: arginine biosynthetic process4.51E-03
115GO:0030968: endoplasmic reticulum unfolded protein response4.51E-03
116GO:0006499: N-terminal protein myristoylation4.68E-03
117GO:0010119: regulation of stomatal movement4.91E-03
118GO:0007338: single fertilization5.11E-03
119GO:0046685: response to arsenic-containing substance5.11E-03
120GO:0009617: response to bacterium5.34E-03
121GO:0045087: innate immune response5.38E-03
122GO:0009873: ethylene-activated signaling pathway5.41E-03
123GO:0006099: tricarboxylic acid cycle5.62E-03
124GO:2000280: regulation of root development5.74E-03
125GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.74E-03
126GO:0043069: negative regulation of programmed cell death6.38E-03
127GO:0006896: Golgi to vacuole transport6.38E-03
128GO:0006535: cysteine biosynthetic process from serine6.38E-03
129GO:0006325: chromatin organization6.38E-03
130GO:0000103: sulfate assimilation6.38E-03
131GO:0006378: mRNA polyadenylation7.06E-03
132GO:0010015: root morphogenesis7.06E-03
133GO:0072593: reactive oxygen species metabolic process7.06E-03
134GO:0042742: defense response to bacterium7.60E-03
135GO:0000266: mitochondrial fission7.76E-03
136GO:0010102: lateral root morphogenesis8.48E-03
137GO:0009651: response to salt stress8.52E-03
138GO:0009723: response to ethylene8.94E-03
139GO:0009887: animal organ morphogenesis9.23E-03
140GO:0034605: cellular response to heat9.23E-03
141GO:0006541: glutamine metabolic process9.23E-03
142GO:0002237: response to molecule of bacterial origin9.23E-03
143GO:0009933: meristem structural organization9.23E-03
144GO:0035556: intracellular signal transduction9.51E-03
145GO:0009225: nucleotide-sugar metabolic process1.00E-02
146GO:0007031: peroxisome organization1.00E-02
147GO:0010167: response to nitrate1.00E-02
148GO:0005985: sucrose metabolic process1.00E-02
149GO:0090351: seedling development1.00E-02
150GO:0000162: tryptophan biosynthetic process1.08E-02
151GO:0034976: response to endoplasmic reticulum stress1.08E-02
152GO:0006096: glycolytic process1.11E-02
153GO:0048367: shoot system development1.14E-02
154GO:2000377: regulation of reactive oxygen species metabolic process1.16E-02
155GO:0019344: cysteine biosynthetic process1.16E-02
156GO:0009695: jasmonic acid biosynthetic process1.24E-02
157GO:0031408: oxylipin biosynthetic process1.33E-02
158GO:0018105: peptidyl-serine phosphorylation1.38E-02
159GO:0010227: floral organ abscission1.51E-02
160GO:0071215: cellular response to abscisic acid stimulus1.51E-02
161GO:0042147: retrograde transport, endosome to Golgi1.70E-02
162GO:0010087: phloem or xylem histogenesis1.79E-02
163GO:0015991: ATP hydrolysis coupled proton transport1.79E-02
164GO:0042631: cellular response to water deprivation1.79E-02
165GO:0000271: polysaccharide biosynthetic process1.79E-02
166GO:0010051: xylem and phloem pattern formation1.79E-02
167GO:0006662: glycerol ether metabolic process1.89E-02
168GO:0042752: regulation of circadian rhythm1.99E-02
169GO:0010183: pollen tube guidance2.09E-02
170GO:0009749: response to glucose2.09E-02
171GO:0071554: cell wall organization or biogenesis2.19E-02
172GO:0006891: intra-Golgi vesicle-mediated transport2.19E-02
173GO:0002229: defense response to oomycetes2.19E-02
174GO:0010193: response to ozone2.19E-02
175GO:0009630: gravitropism2.30E-02
176GO:0007264: small GTPase mediated signal transduction2.30E-02
177GO:0010583: response to cyclopentenone2.30E-02
178GO:0016032: viral process2.30E-02
179GO:0009414: response to water deprivation2.44E-02
180GO:0009567: double fertilization forming a zygote and endosperm2.52E-02
181GO:0006470: protein dephosphorylation2.65E-02
182GO:0007165: signal transduction2.67E-02
183GO:0051607: defense response to virus2.74E-02
184GO:0010468: regulation of gene expression2.76E-02
185GO:0001666: response to hypoxia2.85E-02
186GO:0010029: regulation of seed germination2.97E-02
187GO:0009816: defense response to bacterium, incompatible interaction2.97E-02
188GO:0042128: nitrate assimilation3.09E-02
189GO:0048573: photoperiodism, flowering3.20E-02
190GO:0006888: ER to Golgi vesicle-mediated transport3.20E-02
191GO:0009611: response to wounding3.38E-02
192GO:0008219: cell death3.45E-02
193GO:0009817: defense response to fungus, incompatible interaction3.45E-02
194GO:0030244: cellulose biosynthetic process3.45E-02
195GO:0048767: root hair elongation3.57E-02
196GO:0009832: plant-type cell wall biogenesis3.57E-02
197GO:0010043: response to zinc ion3.82E-02
198GO:0007568: aging3.82E-02
199GO:0048527: lateral root development3.82E-02
200GO:0007049: cell cycle3.99E-02
201GO:0016051: carbohydrate biosynthetic process4.08E-02
202GO:0034599: cellular response to oxidative stress4.21E-02
203GO:0080167: response to karrikin4.42E-02
204GO:0006897: endocytosis4.61E-02
205GO:0016192: vesicle-mediated transport4.65E-02
206GO:0050832: defense response to fungus4.79E-02
207GO:0051707: response to other organism4.88E-02
RankGO TermAdjusted P value
1GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity0.00E+00
2GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
3GO:0080138: borate uptake transmembrane transporter activity0.00E+00
4GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
5GO:0103073: anandamide amidohydrolase activity0.00E+00
6GO:0102077: oleamide hydrolase activity0.00E+00
7GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
8GO:0004370: glycerol kinase activity0.00E+00
9GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
10GO:0008777: acetylornithine deacetylase activity0.00E+00
11GO:0005092: GDP-dissociation inhibitor activity0.00E+00
12GO:0004846: urate oxidase activity0.00E+00
13GO:0016301: kinase activity1.94E-05
14GO:0004356: glutamate-ammonia ligase activity5.65E-05
15GO:0036402: proteasome-activating ATPase activity8.30E-05
16GO:0102391: decanoate--CoA ligase activity1.15E-04
17GO:0004012: phospholipid-translocating ATPase activity1.15E-04
18GO:0004747: ribokinase activity1.15E-04
19GO:0004467: long-chain fatty acid-CoA ligase activity1.52E-04
20GO:0008865: fructokinase activity1.94E-04
21GO:0035671: enone reductase activity2.22E-04
22GO:0015208: guanine transmembrane transporter activity2.22E-04
23GO:0015294: solute:cation symporter activity2.22E-04
24GO:0015207: adenine transmembrane transporter activity2.22E-04
25GO:0003867: 4-aminobutyrate transaminase activity2.22E-04
26GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.22E-04
27GO:0005524: ATP binding2.34E-04
28GO:0030955: potassium ion binding3.46E-04
29GO:0004743: pyruvate kinase activity3.46E-04
30GO:0047617: acyl-CoA hydrolase activity3.46E-04
31GO:0015105: arsenite transmembrane transporter activity4.95E-04
32GO:0004061: arylformamidase activity4.95E-04
33GO:0032934: sterol binding4.95E-04
34GO:0019200: carbohydrate kinase activity4.95E-04
35GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding4.95E-04
36GO:0003988: acetyl-CoA C-acyltransferase activity4.95E-04
37GO:0005096: GTPase activator activity5.41E-04
38GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism6.09E-04
39GO:0004712: protein serine/threonine/tyrosine kinase activity7.67E-04
40GO:0017025: TBP-class protein binding7.67E-04
41GO:0005093: Rab GDP-dissociation inhibitor activity8.05E-04
42GO:0005047: signal recognition particle binding8.05E-04
43GO:0004383: guanylate cyclase activity8.05E-04
44GO:0004781: sulfate adenylyltransferase (ATP) activity8.05E-04
45GO:0004725: protein tyrosine phosphatase activity8.53E-04
46GO:0004300: enoyl-CoA hydratase activity1.15E-03
47GO:0001653: peptide receptor activity1.15E-03
48GO:0004108: citrate (Si)-synthase activity1.15E-03
49GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.15E-03
50GO:0046715: borate transmembrane transporter activity1.15E-03
51GO:0005516: calmodulin binding1.21E-03
52GO:0000287: magnesium ion binding1.42E-03
53GO:0003727: single-stranded RNA binding1.46E-03
54GO:0004834: tryptophan synthase activity1.53E-03
55GO:0043015: gamma-tubulin binding1.53E-03
56GO:0015210: uracil transmembrane transporter activity1.53E-03
57GO:0000993: RNA polymerase II core binding1.53E-03
58GO:0005509: calcium ion binding1.86E-03
59GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.95E-03
60GO:0017137: Rab GTPase binding1.95E-03
61GO:0004040: amidase activity1.95E-03
62GO:0048040: UDP-glucuronate decarboxylase activity2.40E-03
63GO:0004709: MAP kinase kinase kinase activity2.40E-03
64GO:0004124: cysteine synthase activity2.89E-03
65GO:0070403: NAD+ binding2.89E-03
66GO:0051753: mannan synthase activity2.89E-03
67GO:0003950: NAD+ ADP-ribosyltransferase activity2.89E-03
68GO:0102425: myricetin 3-O-glucosyltransferase activity3.40E-03
69GO:0102360: daphnetin 3-O-glucosyltransferase activity3.40E-03
70GO:0004620: phospholipase activity3.40E-03
71GO:0009931: calcium-dependent protein serine/threonine kinase activity3.64E-03
72GO:0004683: calmodulin-dependent protein kinase activity3.84E-03
73GO:0047893: flavonol 3-O-glucosyltransferase activity3.94E-03
74GO:0008142: oxysterol binding4.51E-03
75GO:0004630: phospholipase D activity4.51E-03
76GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.51E-03
77GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.11E-03
78GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.11E-03
79GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.74E-03
80GO:0005515: protein binding6.69E-03
81GO:0004674: protein serine/threonine kinase activity7.47E-03
82GO:0008234: cysteine-type peptidase activity1.04E-02
83GO:0043130: ubiquitin binding1.16E-02
84GO:0043424: protein histidine kinase binding1.24E-02
85GO:0019706: protein-cysteine S-palmitoyltransferase activity1.33E-02
86GO:0035251: UDP-glucosyltransferase activity1.33E-02
87GO:0015035: protein disulfide oxidoreductase activity1.38E-02
88GO:0004672: protein kinase activity1.48E-02
89GO:0016760: cellulose synthase (UDP-forming) activity1.51E-02
90GO:0003756: protein disulfide isomerase activity1.60E-02
91GO:0003924: GTPase activity1.60E-02
92GO:0047134: protein-disulfide reductase activity1.70E-02
93GO:0030170: pyridoxal phosphate binding1.86E-02
94GO:0008080: N-acetyltransferase activity1.89E-02
95GO:0004791: thioredoxin-disulfide reductase activity1.99E-02
96GO:0016853: isomerase activity1.99E-02
97GO:0004872: receptor activity2.09E-02
98GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.41E-02
99GO:0008017: microtubule binding2.42E-02
100GO:0016759: cellulose synthase activity2.52E-02
101GO:0008237: metallopeptidase activity2.63E-02
102GO:0016413: O-acetyltransferase activity2.74E-02
103GO:0051213: dioxygenase activity2.85E-02
104GO:0015250: water channel activity2.85E-02
105GO:0005215: transporter activity2.93E-02
106GO:0030247: polysaccharide binding3.20E-02
107GO:0015238: drug transmembrane transporter activity3.57E-02
108GO:0016788: hydrolase activity, acting on ester bonds3.65E-02
109GO:0003682: chromatin binding3.78E-02
110GO:0050897: cobalt ion binding3.82E-02
111GO:0003746: translation elongation factor activity4.08E-02
112GO:0000149: SNARE binding4.34E-02
113GO:0003729: mRNA binding4.50E-02
114GO:0005484: SNAP receptor activity4.88E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0071561: nucleus-vacuole junction0.00E+00
3GO:0005886: plasma membrane5.13E-07
4GO:0005829: cytosol6.45E-05
5GO:0031597: cytosolic proteasome complex1.15E-04
6GO:0005783: endoplasmic reticulum1.27E-04
7GO:0031595: nuclear proteasome complex1.52E-04
8GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I2.22E-04
9GO:0045252: oxoglutarate dehydrogenase complex2.22E-04
10GO:0012510: trans-Golgi network transport vesicle membrane2.22E-04
11GO:0032044: DSIF complex2.22E-04
12GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II2.22E-04
13GO:0008540: proteasome regulatory particle, base subcomplex3.46E-04
14GO:0005773: vacuole4.59E-04
15GO:0005777: peroxisome7.14E-04
16GO:0016328: lateral plasma membrane8.05E-04
17GO:0005774: vacuolar membrane1.14E-03
18GO:0031461: cullin-RING ubiquitin ligase complex1.15E-03
19GO:0005968: Rab-protein geranylgeranyltransferase complex1.15E-03
20GO:0005849: mRNA cleavage factor complex1.15E-03
21GO:0000323: lytic vacuole1.15E-03
22GO:0000502: proteasome complex1.36E-03
23GO:0005794: Golgi apparatus1.43E-03
24GO:0033179: proton-transporting V-type ATPase, V0 domain1.53E-03
25GO:0005770: late endosome1.84E-03
26GO:0030140: trans-Golgi network transport vesicle2.40E-03
27GO:0030173: integral component of Golgi membrane2.89E-03
28GO:0016363: nuclear matrix2.89E-03
29GO:0000794: condensed nuclear chromosome3.40E-03
30GO:0012507: ER to Golgi transport vesicle membrane3.94E-03
31GO:0030131: clathrin adaptor complex3.94E-03
32GO:0009514: glyoxysome4.51E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.51E-03
34GO:0034045: pre-autophagosomal structure membrane4.51E-03
35GO:0005802: trans-Golgi network5.05E-03
36GO:0005737: cytoplasm6.20E-03
37GO:0030125: clathrin vesicle coat6.38E-03
38GO:0031902: late endosome membrane6.39E-03
39GO:0005769: early endosome1.08E-02
40GO:0005905: clathrin-coated pit1.33E-02
41GO:0005789: endoplasmic reticulum membrane1.58E-02
42GO:0030136: clathrin-coated vesicle1.70E-02
43GO:0009524: phragmoplast1.77E-02
44GO:0000932: P-body2.85E-02
45GO:0005788: endoplasmic reticulum lumen2.97E-02
46GO:0000151: ubiquitin ligase complex3.45E-02
47GO:0005643: nuclear pore3.45E-02
48GO:0000325: plant-type vacuole3.82E-02
49GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.92E-02
50GO:0005819: spindle4.34E-02
51GO:0031201: SNARE complex4.61E-02
Gene type



Gene DE type