co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G11600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0008614: pyridoxine metabolic process	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0006105: succinate metabolic process	0.00E+00
5	GO:0045022: early endosome to late endosome transport	0.00E+00
6	GO:0044249: cellular biosynthetic process	0.00E+00
7	GO:0019484: beta-alanine catabolic process	0.00E+00
8	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
9	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
10	GO:0005997: xylulose metabolic process	0.00E+00
11	GO:0009415: response to water	3.03E-06
12	GO:0019509: L-methionine salvage from methylthioadenosine	1.00E-04
13	GO:0006333: chromatin assembly or disassembly	1.33E-04
14	GO:0046167: glycerol-3-phosphate biosynthetic process	2.04E-04
15	GO:0035266: meristem growth	2.04E-04
16	GO:0009450: gamma-aminobutyric acid catabolic process	2.04E-04
17	GO:0007292: female gamete generation	2.04E-04
18	GO:0019628: urate catabolic process	2.04E-04
19	GO:0010184: cytokinin transport	2.04E-04
20	GO:0009865: pollen tube adhesion	2.04E-04
21	GO:0006540: glutamate decarboxylation to succinate	2.04E-04
22	GO:0006144: purine nucleobase metabolic process	2.04E-04
23	GO:0010286: heat acclimation	2.63E-04
24	GO:0048829: root cap development	3.60E-04
25	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.57E-04
26	GO:0010033: response to organic substance	4.57E-04
27	GO:0006641: triglyceride metabolic process	4.57E-04
28	GO:0042819: vitamin B6 biosynthetic process	4.57E-04
29	GO:0010163: high-affinity potassium ion import	4.57E-04
30	GO:0051788: response to misfolded protein	4.57E-04
31	GO:0051258: protein polymerization	4.57E-04
32	GO:1902000: homogentisate catabolic process	4.57E-04
33	GO:0006499: N-terminal protein myristoylation	4.93E-04
34	GO:0006541: glutamine metabolic process	6.10E-04
35	GO:0030029: actin filament-based process	7.44E-04
36	GO:0009072: aromatic amino acid family metabolic process	7.44E-04
37	GO:0060968: regulation of gene silencing	7.44E-04
38	GO:0042344: indole glucosinolate catabolic process	7.44E-04
39	GO:0019563: glycerol catabolic process	7.44E-04
40	GO:0009617: response to bacterium	8.23E-04
41	GO:0009409: response to cold	9.06E-04
42	GO:0009269: response to desiccation	1.01E-03
43	GO:0006572: tyrosine catabolic process	1.06E-03
44	GO:0051259: protein oligomerization	1.06E-03
45	GO:0006020: inositol metabolic process	1.06E-03
46	GO:0010601: positive regulation of auxin biosynthetic process	1.06E-03
47	GO:0006072: glycerol-3-phosphate metabolic process	1.06E-03
48	GO:0015749: monosaccharide transport	1.06E-03
49	GO:0009399: nitrogen fixation	1.06E-03
50	GO:0009113: purine nucleobase biosynthetic process	1.06E-03
51	GO:0008615: pyridoxine biosynthetic process	1.06E-03
52	GO:1901332: negative regulation of lateral root development	1.06E-03
53	GO:0042823: pyridoxal phosphate biosynthetic process	1.06E-03
54	GO:0006882: cellular zinc ion homeostasis	1.06E-03
55	GO:0055114: oxidation-reduction process	1.23E-03
56	GO:0046686: response to cadmium ion	1.23E-03
57	GO:0006970: response to osmotic stress	1.36E-03
58	GO:0006646: phosphatidylethanolamine biosynthetic process	1.41E-03
59	GO:0015743: malate transport	1.41E-03
60	GO:0033320: UDP-D-xylose biosynthetic process	1.41E-03
61	GO:0006536: glutamate metabolic process	1.41E-03
62	GO:0010188: response to microbial phytotoxin	1.41E-03
63	GO:0006878: cellular copper ion homeostasis	1.41E-03
64	GO:0006979: response to oxidative stress	1.73E-03
65	GO:0098719: sodium ion import across plasma membrane	1.80E-03
66	GO:0043097: pyrimidine nucleoside salvage	1.80E-03
67	GO:0005513: detection of calcium ion	1.80E-03
68	GO:0006635: fatty acid beta-oxidation	2.01E-03
69	GO:0048827: phyllome development	2.21E-03
70	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.21E-03
71	GO:0048232: male gamete generation	2.21E-03
72	GO:0006555: methionine metabolic process	2.21E-03
73	GO:0043248: proteasome assembly	2.21E-03
74	GO:0042732: D-xylose metabolic process	2.21E-03
75	GO:0006206: pyrimidine nucleobase metabolic process	2.21E-03
76	GO:0006014: D-ribose metabolic process	2.21E-03
77	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.21E-03
78	GO:0009737: response to abscisic acid	2.44E-03
79	GO:0045926: negative regulation of growth	2.66E-03
80	GO:0009612: response to mechanical stimulus	2.66E-03
81	GO:0006694: steroid biosynthetic process	2.66E-03
82	GO:0031930: mitochondria-nucleus signaling pathway	2.66E-03
83	GO:0006511: ubiquitin-dependent protein catabolic process	3.05E-03
84	GO:0048437: floral organ development	3.13E-03
85	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.13E-03
86	GO:0009396: folic acid-containing compound biosynthetic process	3.13E-03
87	GO:0048573: photoperiodism, flowering	3.40E-03
88	GO:0009819: drought recovery	3.63E-03
89	GO:0006491: N-glycan processing	3.63E-03
90	GO:0006605: protein targeting	3.63E-03
91	GO:0010078: maintenance of root meristem identity	3.63E-03
92	GO:0007623: circadian rhythm	3.65E-03
93	GO:0010311: lateral root formation	3.95E-03
94	GO:0006972: hyperosmotic response	4.15E-03
95	GO:0006811: ion transport	4.15E-03
96	GO:0009631: cold acclimation	4.35E-03
97	GO:0006607: NLS-bearing protein import into nucleus	4.70E-03
98	GO:0009051: pentose-phosphate shunt, oxidative branch	4.70E-03
99	GO:0046916: cellular transition metal ion homeostasis	4.70E-03
100	GO:0051453: regulation of intracellular pH	5.27E-03
101	GO:0035999: tetrahydrofolate interconversion	5.27E-03
102	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.27E-03
103	GO:0008202: steroid metabolic process	5.27E-03
104	GO:0006897: endocytosis	5.66E-03
105	GO:0009688: abscisic acid biosynthetic process	5.86E-03
106	GO:0009414: response to water deprivation	5.88E-03
107	GO:0042542: response to hydrogen peroxide	5.89E-03
108	GO:0010015: root morphogenesis	6.48E-03
109	GO:0009682: induced systemic resistance	6.48E-03
110	GO:0052544: defense response by callose deposition in cell wall	6.48E-03
111	GO:0009651: response to salt stress	6.52E-03
112	GO:0010102: lateral root morphogenesis	7.78E-03
113	GO:0006006: glucose metabolic process	7.78E-03
114	GO:0035556: intracellular signal transduction	7.89E-03
115	GO:0002237: response to molecule of bacterial origin	8.47E-03
116	GO:0007034: vacuolar transport	8.47E-03
117	GO:0009933: meristem structural organization	8.47E-03
118	GO:0051603: proteolysis involved in cellular protein catabolic process	8.56E-03
119	GO:0009225: nucleotide-sugar metabolic process	9.17E-03
120	GO:0007031: peroxisome organization	9.17E-03
121	GO:0010167: response to nitrate	9.17E-03
122	GO:0005985: sucrose metabolic process	9.17E-03
123	GO:0071732: cellular response to nitric oxide	9.17E-03
124	GO:0090351: seedling development	9.17E-03
125	GO:0006863: purine nucleobase transport	9.90E-03
126	GO:0048367: shoot system development	1.01E-02
127	GO:2000377: regulation of reactive oxygen species metabolic process	1.06E-02
128	GO:0045333: cellular respiration	1.06E-02
129	GO:0051302: regulation of cell division	1.14E-02
130	GO:0016575: histone deacetylation	1.14E-02
131	GO:0009695: jasmonic acid biosynthetic process	1.14E-02
132	GO:0030433: ubiquitin-dependent ERAD pathway	1.30E-02
133	GO:0071215: cellular response to abscisic acid stimulus	1.38E-02
134	GO:0071369: cellular response to ethylene stimulus	1.38E-02
135	GO:0048364: root development	1.45E-02
136	GO:0009845: seed germination	1.60E-02
137	GO:0015991: ATP hydrolysis coupled proton transport	1.64E-02
138	GO:0042631: cellular response to water deprivation	1.64E-02
139	GO:0000226: microtubule cytoskeleton organization	1.64E-02
140	GO:0042391: regulation of membrane potential	1.64E-02
141	GO:0080022: primary root development	1.64E-02
142	GO:0010051: xylem and phloem pattern formation	1.64E-02
143	GO:0046323: glucose import	1.73E-02
144	GO:0010154: fruit development	1.73E-02
145	GO:0006814: sodium ion transport	1.82E-02
146	GO:0048544: recognition of pollen	1.82E-02
147	GO:0009556: microsporogenesis	1.92E-02
148	GO:0009851: auxin biosynthetic process	1.92E-02
149	GO:0010183: pollen tube guidance	1.92E-02
150	GO:0009749: response to glucose	1.92E-02
151	GO:0019252: starch biosynthetic process	1.92E-02
152	GO:0008654: phospholipid biosynthetic process	1.92E-02
153	GO:0000302: response to reactive oxygen species	2.01E-02
154	GO:0042742: defense response to bacterium	2.10E-02
155	GO:0007165: signal transduction	2.17E-02
156	GO:0071281: cellular response to iron ion	2.21E-02
157	GO:0009567: double fertilization forming a zygote and endosperm	2.30E-02
158	GO:0019760: glucosinolate metabolic process	2.30E-02
159	GO:0006464: cellular protein modification process	2.30E-02
160	GO:0006914: autophagy	2.30E-02
161	GO:0010468: regulation of gene expression	2.44E-02
162	GO:0016126: sterol biosynthetic process	2.61E-02
163	GO:0001666: response to hypoxia	2.61E-02
164	GO:0009911: positive regulation of flower development	2.61E-02
165	GO:0010029: regulation of seed germination	2.72E-02
166	GO:0016310: phosphorylation	2.86E-02
167	GO:0006950: response to stress	2.94E-02
168	GO:0008219: cell death	3.16E-02
169	GO:0009817: defense response to fungus, incompatible interaction	3.16E-02
170	GO:0018298: protein-chromophore linkage	3.16E-02
171	GO:0009637: response to blue light	3.74E-02
172	GO:0045087: innate immune response	3.74E-02
173	GO:0016051: carbohydrate biosynthetic process	3.74E-02
174	GO:0006099: tricarboxylic acid cycle	3.86E-02
175	GO:0030001: metal ion transport	4.10E-02
176	GO:0016192: vesicle-mediated transport	4.12E-02
177	GO:0045454: cell redox homeostasis	4.68E-02
178	GO:0009644: response to high light intensity	4.73E-02
179	GO:0006886: intracellular protein transport	4.82E-02
180	GO:0009965: leaf morphogenesis	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
2	GO:0010293: abscisic aldehyde oxidase activity	0.00E+00
3	GO:0004334: fumarylacetoacetase activity	0.00E+00
4	GO:0004359: glutaminase activity	0.00E+00
5	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
6	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
7	GO:0004846: urate oxidase activity	0.00E+00
8	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
9	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
10	GO:0004370: glycerol kinase activity	0.00E+00
11	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
12	GO:0030527: structural constituent of chromatin	1.66E-05
13	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.70E-04
14	GO:0009679: hexose:proton symporter activity	2.04E-04
15	GO:0035671: enone reductase activity	2.04E-04
16	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.04E-04
17	GO:0046870: cadmium ion binding	2.04E-04
18	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.04E-04
19	GO:0004856: xylulokinase activity	2.04E-04
20	GO:0003867: 4-aminobutyrate transaminase activity	2.04E-04
21	GO:0016274: protein-arginine N-methyltransferase activity	2.04E-04
22	GO:0030544: Hsp70 protein binding	2.04E-04
23	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.06E-04
24	GO:0001047: core promoter binding	4.57E-04
25	GO:0032791: lead ion binding	4.57E-04
26	GO:0004609: phosphatidylserine decarboxylase activity	4.57E-04
27	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.57E-04
28	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.57E-04
29	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	4.57E-04
30	GO:0004839: ubiquitin activating enzyme activity	4.57E-04
31	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.57E-04
32	GO:0004329: formate-tetrahydrofolate ligase activity	4.57E-04
33	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	4.57E-04
34	GO:0019200: carbohydrate kinase activity	4.57E-04
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.44E-04
36	GO:0005047: signal recognition particle binding	7.44E-04
37	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.44E-04
38	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.06E-03
39	GO:0004300: enoyl-CoA hydratase activity	1.06E-03
40	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.06E-03
41	GO:0004108: citrate (Si)-synthase activity	1.06E-03
42	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.41E-03
43	GO:0043015: gamma-tubulin binding	1.41E-03
44	GO:0004031: aldehyde oxidase activity	1.41E-03
45	GO:0050302: indole-3-acetaldehyde oxidase activity	1.41E-03
46	GO:0005253: anion channel activity	1.41E-03
47	GO:0009916: alternative oxidase activity	1.41E-03
48	GO:0005509: calcium ion binding	1.46E-03
49	GO:0004356: glutamate-ammonia ligase activity	1.80E-03
50	GO:0015145: monosaccharide transmembrane transporter activity	1.80E-03
51	GO:0008641: small protein activating enzyme activity	1.80E-03
52	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.80E-03
53	GO:0048040: UDP-glucuronate decarboxylase activity	2.21E-03
54	GO:0004629: phospholipase C activity	2.21E-03
55	GO:0015562: efflux transmembrane transporter activity	2.21E-03
56	GO:0019137: thioglucosidase activity	2.21E-03
57	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.21E-03
58	GO:0000293: ferric-chelate reductase activity	2.21E-03
59	GO:0036402: proteasome-activating ATPase activity	2.21E-03
60	GO:0070403: NAD+ binding	2.66E-03
61	GO:0070300: phosphatidic acid binding	2.66E-03
62	GO:0004849: uridine kinase activity	2.66E-03
63	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.66E-03
64	GO:0004747: ribokinase activity	2.66E-03
65	GO:0004435: phosphatidylinositol phospholipase C activity	2.66E-03
66	GO:0015144: carbohydrate transmembrane transporter activity	3.04E-03
67	GO:0009881: photoreceptor activity	3.13E-03
68	GO:0015140: malate transmembrane transporter activity	3.13E-03
69	GO:0005351: sugar:proton symporter activity	3.54E-03
70	GO:0008865: fructokinase activity	3.63E-03
71	GO:0004525: ribonuclease III activity	3.63E-03
72	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.15E-03
73	GO:0050897: cobalt ion binding	4.35E-03
74	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.70E-03
75	GO:0015386: potassium:proton antiporter activity	6.48E-03
76	GO:0008139: nuclear localization sequence binding	7.78E-03
77	GO:0008234: cysteine-type peptidase activity	9.16E-03
78	GO:0030552: cAMP binding	9.17E-03
79	GO:0004867: serine-type endopeptidase inhibitor activity	9.17E-03
80	GO:0030553: cGMP binding	9.17E-03
81	GO:0017025: TBP-class protein binding	9.17E-03
82	GO:0004407: histone deacetylase activity	1.06E-02
83	GO:0043130: ubiquitin binding	1.06E-02
84	GO:0043424: protein histidine kinase binding	1.14E-02
85	GO:0005345: purine nucleobase transmembrane transporter activity	1.14E-02
86	GO:0005216: ion channel activity	1.14E-02
87	GO:0008324: cation transmembrane transporter activity	1.14E-02
88	GO:0004707: MAP kinase activity	1.22E-02
89	GO:0005249: voltage-gated potassium channel activity	1.64E-02
90	GO:0030551: cyclic nucleotide binding	1.64E-02
91	GO:0016853: isomerase activity	1.82E-02
92	GO:0016301: kinase activity	2.00E-02
93	GO:0004197: cysteine-type endopeptidase activity	2.11E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.21E-02
95	GO:0015385: sodium:proton antiporter activity	2.21E-02
96	GO:0005200: structural constituent of cytoskeleton	2.41E-02
97	GO:0102483: scopolin beta-glucosidase activity	2.94E-02
98	GO:0030247: polysaccharide binding	2.94E-02
99	GO:0046982: protein heterodimerization activity	3.11E-02
100	GO:0005096: GTPase activator activity	3.27E-02
101	GO:0003682: chromatin binding	3.35E-02
102	GO:0004842: ubiquitin-protein transferase activity	3.38E-02
103	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.50E-02
104	GO:0005515: protein binding	3.77E-02
105	GO:0008422: beta-glucosidase activity	3.98E-02
106	GO:0050661: NADP binding	4.10E-02
107	GO:0005507: copper ion binding	4.37E-02
108	GO:0051537: 2 iron, 2 sulfur cluster binding	4.73E-02
109	GO:0043621: protein self-association	4.73E-02
110	GO:0004871: signal transducer activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:1903600: glutaminase complex	0.00E+00
3	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
4	GO:0005829: cytosol	2.59E-06
5	GO:0000323: lytic vacuole	1.66E-05
6	GO:0005886: plasma membrane	1.74E-04
7	GO:0005737: cytoplasm	3.05E-04
8	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.41E-03
9	GO:0000785: chromatin	2.14E-03
10	GO:0005851: eukaryotic translation initiation factor 2B complex	2.21E-03
11	GO:0005777: peroxisome	2.27E-03
12	GO:0000815: ESCRT III complex	2.66E-03
13	GO:0016363: nuclear matrix	2.66E-03
14	GO:0031597: cytosolic proteasome complex	2.66E-03
15	GO:0031595: nuclear proteasome complex	3.13E-03
16	GO:0030131: clathrin adaptor complex	3.63E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.15E-03
18	GO:0031901: early endosome membrane	4.70E-03
19	GO:0008540: proteasome regulatory particle, base subcomplex	5.27E-03
20	GO:0030125: clathrin vesicle coat	5.86E-03
21	GO:0005764: lysosome	8.47E-03
22	GO:0005769: early endosome	9.90E-03
23	GO:0010008: endosome membrane	1.01E-02
24	GO:0070469: respiratory chain	1.14E-02
25	GO:0005905: clathrin-coated pit	1.22E-02
26	GO:0031965: nuclear membrane	1.92E-02
27	GO:0005615: extracellular space	2.29E-02
28	GO:0016021: integral component of membrane	2.33E-02
29	GO:0005783: endoplasmic reticulum	3.03E-02
30	GO:0005643: nuclear pore	3.16E-02
31	GO:0000786: nucleosome	3.62E-02
32	GO:0005773: vacuole	4.25E-02