co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048449: floral organ formation	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
4	GO:0090701: specification of plant organ identity	0.00E+00
5	GO:0009739: response to gibberellin	3.31E-05
6	GO:0071712: ER-associated misfolded protein catabolic process	3.42E-05
7	GO:0032527: protein exit from endoplasmic reticulum	3.42E-05
8	GO:0055073: cadmium ion homeostasis	3.42E-05
9	GO:0031145: anaphase-promoting complex-dependent catabolic process	6.16E-05
10	GO:0032940: secretion by cell	6.16E-05
11	GO:0030071: regulation of mitotic metaphase/anaphase transition	9.36E-05
12	GO:0071585: detoxification of cadmium ion	1.30E-04
13	GO:0010023: proanthocyanidin biosynthetic process	1.30E-04
14	GO:0032876: negative regulation of DNA endoreduplication	1.68E-04
15	GO:0000060: protein import into nucleus, translocation	2.10E-04
16	GO:0010189: vitamin E biosynthetic process	2.53E-04
17	GO:0010077: maintenance of inflorescence meristem identity	2.53E-04
18	GO:0070413: trehalose metabolism in response to stress	3.46E-04
19	GO:0032875: regulation of DNA endoreduplication	3.46E-04
20	GO:0046916: cellular transition metal ion homeostasis	4.45E-04
21	GO:0042761: very long-chain fatty acid biosynthetic process	4.96E-04
22	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	4.96E-04
23	GO:0010629: negative regulation of gene expression	5.49E-04
24	GO:0010628: positive regulation of gene expression	7.14E-04
25	GO:0009718: anthocyanin-containing compound biosynthetic process	7.14E-04
26	GO:0006636: unsaturated fatty acid biosynthetic process	8.91E-04
27	GO:0005992: trehalose biosynthetic process	9.51E-04
28	GO:0006366: transcription from RNA polymerase II promoter	1.08E-03
29	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.34E-03
30	GO:0010087: phloem or xylem histogenesis	1.41E-03
31	GO:0008654: phospholipid biosynthetic process	1.63E-03
32	GO:0009567: double fertilization forming a zygote and endosperm	1.94E-03
33	GO:0009911: positive regulation of flower development	2.18E-03
34	GO:0010029: regulation of seed germination	2.26E-03
35	GO:0010119: regulation of stomatal movement	2.87E-03
36	GO:0030001: metal ion transport	3.33E-03
37	GO:0008283: cell proliferation	3.63E-03
38	GO:0006511: ubiquitin-dependent protein catabolic process	3.82E-03
39	GO:0009644: response to high light intensity	3.82E-03
40	GO:0000165: MAPK cascade	4.13E-03
41	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.13E-03
42	GO:0010150: leaf senescence	8.26E-03
43	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.06E-02
44	GO:0006970: response to osmotic stress	1.18E-02
45	GO:0009737: response to abscisic acid	1.21E-02
46	GO:0009723: response to ethylene	1.24E-02
47	GO:0046777: protein autophosphorylation	1.37E-02
48	GO:0016310: phosphorylation	1.40E-02
49	GO:0015979: photosynthesis	1.43E-02
50	GO:0009751: response to salicylic acid	1.70E-02
51	GO:0006629: lipid metabolic process	1.72E-02
52	GO:0009753: response to jasmonic acid	1.81E-02
53	GO:0009651: response to salt stress	1.91E-02
54	GO:0009908: flower development	2.41E-02
55	GO:0009738: abscisic acid-activated signaling pathway	2.53E-02
56	GO:0009611: response to wounding	2.63E-02
57	GO:0035556: intracellular signal transduction	2.69E-02
58	GO:0051301: cell division	2.76E-02
59	GO:0045893: positive regulation of transcription, DNA-templated	2.86E-02
60	GO:0009414: response to water deprivation	4.21E-02
61	GO:0030154: cell differentiation	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0008728: GTP diphosphokinase activity	3.42E-05
3	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.42E-05
4	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.30E-04
5	GO:0004605: phosphatidate cytidylyltransferase activity	2.10E-04
6	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.94E-04
7	GO:0046914: transition metal ion binding	3.94E-04
8	GO:0008134: transcription factor binding	9.51E-04
9	GO:0001046: core promoter sequence-specific DNA binding	9.51E-04
10	GO:0004842: ubiquitin-protein transferase activity	1.07E-03
11	GO:0004518: nuclease activity	1.78E-03
12	GO:0016791: phosphatase activity	1.94E-03
13	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.87E-03
14	GO:0016298: lipase activity	4.55E-03
15	GO:0031625: ubiquitin protein ligase binding	4.76E-03
16	GO:0044212: transcription regulatory region DNA binding	5.68E-03
17	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	7.23E-03
18	GO:0046983: protein dimerization activity	7.57E-03
19	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.05E-02
20	GO:0016787: hydrolase activity	1.22E-02
21	GO:0061630: ubiquitin protein ligase activity	1.35E-02
22	GO:0004519: endonuclease activity	1.83E-02
23	GO:0004674: protein serine/threonine kinase activity	2.81E-02
24	GO:0005515: protein binding	3.57E-02
25	GO:0005525: GTP binding	3.70E-02
26	GO:0008270: zinc ion binding	4.16E-02
27	GO:0003677: DNA binding	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0036513: Derlin-1 retrotranslocation complex	9.36E-05
2	GO:0005680: anaphase-promoting complex	4.45E-04
3	GO:0016604: nuclear body	4.96E-04
4	GO:0005634: nucleus	2.48E-03
5	GO:0005829: cytosol	3.42E-03
6	GO:0009706: chloroplast inner membrane	5.66E-03
7	GO:0031969: chloroplast membrane	1.31E-02
8	GO:0005783: endoplasmic reticulum	3.98E-02
9	GO:0009536: plastid	4.95E-02