co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0015979: photosynthesis	3.28E-07
4	GO:0009773: photosynthetic electron transport in photosystem I	7.07E-07
5	GO:0010196: nonphotochemical quenching	5.07E-06
6	GO:0009735: response to cytokinin	6.92E-06
7	GO:0090391: granum assembly	1.44E-05
8	GO:0010205: photoinhibition	2.07E-05
9	GO:0016024: CDP-diacylglycerol biosynthetic process	4.33E-05
10	GO:0010207: photosystem II assembly	6.46E-05
11	GO:0006412: translation	6.69E-05
12	GO:0015995: chlorophyll biosynthetic process	7.63E-05
13	GO:0042254: ribosome biogenesis	1.06E-04
14	GO:0006655: phosphatidylglycerol biosynthetic process	1.32E-04
15	GO:0042335: cuticle development	2.60E-04
16	GO:0071588: hydrogen peroxide mediated signaling pathway	2.97E-04
17	GO:0071277: cellular response to calcium ion	2.97E-04
18	GO:0043686: co-translational protein modification	2.97E-04
19	GO:0032544: plastid translation	3.66E-04
20	GO:0010027: thylakoid membrane organization	6.13E-04
21	GO:0010024: phytochromobilin biosynthetic process	6.50E-04
22	GO:0035304: regulation of protein dephosphorylation	6.50E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	6.50E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	6.50E-04
25	GO:0001736: establishment of planar polarity	6.50E-04
26	GO:0015714: phosphoenolpyruvate transport	1.05E-03
27	GO:0006788: heme oxidation	1.05E-03
28	GO:0006518: peptide metabolic process	1.05E-03
29	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-03
30	GO:0045490: pectin catabolic process	1.42E-03
31	GO:0071484: cellular response to light intensity	1.51E-03
32	GO:0080170: hydrogen peroxide transmembrane transport	1.51E-03
33	GO:0009650: UV protection	1.51E-03
34	GO:1901332: negative regulation of lateral root development	1.51E-03
35	GO:0031408: oxylipin biosynthetic process	1.70E-03
36	GO:0016998: cell wall macromolecule catabolic process	1.70E-03
37	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-03
38	GO:0045727: positive regulation of translation	2.02E-03
39	GO:0015994: chlorophyll metabolic process	2.02E-03
40	GO:0030104: water homeostasis	2.02E-03
41	GO:0015713: phosphoglycerate transport	2.02E-03
42	GO:0034220: ion transmembrane transport	2.57E-03
43	GO:0030308: negative regulation of cell growth	2.58E-03
44	GO:0006564: L-serine biosynthetic process	2.58E-03
45	GO:0010236: plastoquinone biosynthetic process	2.58E-03
46	GO:0031365: N-terminal protein amino acid modification	2.58E-03
47	GO:0006461: protein complex assembly	2.58E-03
48	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.19E-03
49	GO:0009913: epidermal cell differentiation	3.19E-03
50	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.19E-03
51	GO:0010337: regulation of salicylic acid metabolic process	3.19E-03
52	GO:0006561: proline biosynthetic process	3.19E-03
53	GO:0042549: photosystem II stabilization	3.19E-03
54	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.42E-03
55	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.84E-03
56	GO:0010189: vitamin E biosynthetic process	3.84E-03
57	GO:0010019: chloroplast-nucleus signaling pathway	3.84E-03
58	GO:0009828: plant-type cell wall loosening	4.15E-03
59	GO:0009395: phospholipid catabolic process	4.53E-03
60	GO:0009772: photosynthetic electron transport in photosystem II	4.53E-03
61	GO:1900057: positive regulation of leaf senescence	4.53E-03
62	GO:0010444: guard mother cell differentiation	4.53E-03
63	GO:0006400: tRNA modification	4.53E-03
64	GO:0008610: lipid biosynthetic process	5.26E-03
65	GO:0030091: protein repair	5.26E-03
66	GO:0006605: protein targeting	5.26E-03
67	GO:0009704: de-etiolation	5.26E-03
68	GO:0031540: regulation of anthocyanin biosynthetic process	5.26E-03
69	GO:0006869: lipid transport	5.81E-03
70	GO:0022900: electron transport chain	6.03E-03
71	GO:0009657: plastid organization	6.03E-03
72	GO:0006633: fatty acid biosynthetic process	6.44E-03
73	GO:0018298: protein-chromophore linkage	6.45E-03
74	GO:0032259: methylation	6.50E-03
75	GO:0016042: lipid catabolic process	6.65E-03
76	GO:0010311: lateral root formation	6.78E-03
77	GO:0010206: photosystem II repair	6.83E-03
78	GO:0034765: regulation of ion transmembrane transport	6.83E-03
79	GO:0090333: regulation of stomatal closure	6.83E-03
80	GO:0009637: response to blue light	8.18E-03
81	GO:0006032: chitin catabolic process	8.55E-03
82	GO:0009688: abscisic acid biosynthetic process	8.55E-03
83	GO:0048829: root cap development	8.55E-03
84	GO:0006949: syncytium formation	8.55E-03
85	GO:0034599: cellular response to oxidative stress	8.56E-03
86	GO:0000038: very long-chain fatty acid metabolic process	9.46E-03
87	GO:0019684: photosynthesis, light reaction	9.46E-03
88	GO:0043085: positive regulation of catalytic activity	9.46E-03
89	GO:0009750: response to fructose	9.46E-03
90	GO:0018119: peptidyl-cysteine S-nitrosylation	9.46E-03
91	GO:0048765: root hair cell differentiation	9.46E-03
92	GO:0006810: transport	1.06E-02
93	GO:0010114: response to red light	1.06E-02
94	GO:0010628: positive regulation of gene expression	1.14E-02
95	GO:0006006: glucose metabolic process	1.14E-02
96	GO:0010229: inflorescence development	1.14E-02
97	GO:0009718: anthocyanin-containing compound biosynthetic process	1.14E-02
98	GO:0009725: response to hormone	1.14E-02
99	GO:0048467: gynoecium development	1.24E-02
100	GO:0010143: cutin biosynthetic process	1.24E-02
101	GO:0019253: reductive pentose-phosphate cycle	1.24E-02
102	GO:0009664: plant-type cell wall organization	1.33E-02
103	GO:0009825: multidimensional cell growth	1.34E-02
104	GO:0010167: response to nitrate	1.34E-02
105	GO:0071732: cellular response to nitric oxide	1.34E-02
106	GO:0010053: root epidermal cell differentiation	1.34E-02
107	GO:0009809: lignin biosynthetic process	1.43E-02
108	GO:0010025: wax biosynthetic process	1.45E-02
109	GO:0042023: DNA endoreduplication	1.45E-02
110	GO:0006833: water transport	1.45E-02
111	GO:0000027: ribosomal large subunit assembly	1.56E-02
112	GO:0009416: response to light stimulus	1.65E-02
113	GO:0080167: response to karrikin	1.67E-02
114	GO:0019953: sexual reproduction	1.68E-02
115	GO:0007017: microtubule-based process	1.68E-02
116	GO:0009695: jasmonic acid biosynthetic process	1.68E-02
117	GO:0009768: photosynthesis, light harvesting in photosystem I	1.68E-02
118	GO:0006096: glycolytic process	1.69E-02
119	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.74E-02
120	GO:0009269: response to desiccation	1.79E-02
121	GO:0003333: amino acid transmembrane transport	1.79E-02
122	GO:0055114: oxidation-reduction process	1.83E-02
123	GO:0030245: cellulose catabolic process	1.91E-02
124	GO:0035428: hexose transmembrane transport	1.91E-02
125	GO:0045893: positive regulation of transcription, DNA-templated	2.03E-02
126	GO:0009411: response to UV	2.03E-02
127	GO:0071369: cellular response to ethylene stimulus	2.03E-02
128	GO:0009624: response to nematode	2.04E-02
129	GO:0009742: brassinosteroid mediated signaling pathway	2.16E-02
130	GO:0042127: regulation of cell proliferation	2.16E-02
131	GO:0009306: protein secretion	2.16E-02
132	GO:0042391: regulation of membrane potential	2.42E-02
133	GO:0080022: primary root development	2.42E-02
134	GO:0009958: positive gravitropism	2.55E-02
135	GO:0006662: glycerol ether metabolic process	2.55E-02
136	GO:0010182: sugar mediated signaling pathway	2.55E-02
137	GO:0046323: glucose import	2.55E-02
138	GO:0009741: response to brassinosteroid	2.55E-02
139	GO:0042744: hydrogen peroxide catabolic process	2.91E-02
140	GO:0000302: response to reactive oxygen species	2.96E-02
141	GO:0016032: viral process	3.10E-02
142	GO:0071281: cellular response to iron ion	3.25E-02
143	GO:0010252: auxin homeostasis	3.39E-02
144	GO:0007623: circadian rhythm	3.52E-02
145	GO:0071805: potassium ion transmembrane transport	3.55E-02
146	GO:0009734: auxin-activated signaling pathway	4.15E-02
147	GO:0009627: systemic acquired resistance	4.16E-02
148	GO:0010411: xyloglucan metabolic process	4.32E-02
149	GO:0048573: photoperiodism, flowering	4.32E-02
150	GO:0030244: cellulose biosynthetic process	4.65E-02
151	GO:0006979: response to oxidative stress	4.70E-02
152	GO:0009407: toxin catabolic process	4.98E-02
153	GO:0010218: response to far red light	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0019843: rRNA binding	5.17E-08
9	GO:0005528: FK506 binding	3.83E-06
10	GO:0003735: structural constituent of ribosome	1.46E-05
11	GO:0008266: poly(U) RNA binding	6.46E-05
12	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.32E-04
13	GO:0030570: pectate lyase activity	1.85E-04
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-04
15	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.97E-04
16	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.97E-04
17	GO:0010242: oxygen evolving activity	2.97E-04
18	GO:0042586: peptide deformylase activity	2.97E-04
19	GO:0045485: omega-6 fatty acid desaturase activity	2.97E-04
20	GO:0004321: fatty-acyl-CoA synthase activity	2.97E-04
21	GO:0019210: kinase inhibitor activity	2.97E-04
22	GO:0005080: protein kinase C binding	2.97E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.97E-04
24	GO:0016788: hydrolase activity, acting on ester bonds	6.05E-04
25	GO:0016630: protochlorophyllide reductase activity	6.50E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.50E-04
27	GO:0047746: chlorophyllase activity	6.50E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	6.50E-04
29	GO:0016746: transferase activity, transferring acyl groups	6.51E-04
30	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.05E-03
31	GO:0016851: magnesium chelatase activity	1.51E-03
32	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.02E-03
33	GO:0010328: auxin influx transmembrane transporter activity	2.02E-03
34	GO:0004392: heme oxygenase (decyclizing) activity	2.02E-03
35	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.02E-03
36	GO:0015120: phosphoglycerate transmembrane transporter activity	2.02E-03
37	GO:0010011: auxin binding	2.02E-03
38	GO:0003959: NADPH dehydrogenase activity	2.58E-03
39	GO:0016491: oxidoreductase activity	2.82E-03
40	GO:0004130: cytochrome-c peroxidase activity	3.19E-03
41	GO:0016688: L-ascorbate peroxidase activity	3.19E-03
42	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.19E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.84E-03
44	GO:0005242: inward rectifier potassium channel activity	3.84E-03
45	GO:0052689: carboxylic ester hydrolase activity	4.47E-03
46	GO:0016597: amino acid binding	4.67E-03
47	GO:0015250: water channel activity	4.94E-03
48	GO:0016168: chlorophyll binding	5.22E-03
49	GO:0052747: sinapyl alcohol dehydrogenase activity	5.26E-03
50	GO:0016829: lyase activity	5.33E-03
51	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.03E-03
52	GO:0016207: 4-coumarate-CoA ligase activity	6.83E-03
53	GO:0008047: enzyme activator activity	8.55E-03
54	GO:0004568: chitinase activity	8.55E-03
55	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.04E-02
56	GO:0004565: beta-galactosidase activity	1.14E-02
57	GO:0004022: alcohol dehydrogenase (NAD) activity	1.14E-02
58	GO:0008168: methyltransferase activity	1.21E-02
59	GO:0008131: primary amine oxidase activity	1.24E-02
60	GO:0051287: NAD binding	1.28E-02
61	GO:0008146: sulfotransferase activity	1.34E-02
62	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.45E-02
63	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.45E-02
64	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.45E-02
65	GO:0031409: pigment binding	1.45E-02
66	GO:0004176: ATP-dependent peptidase activity	1.79E-02
67	GO:0008810: cellulase activity	2.03E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	2.03E-02
69	GO:0047134: protein-disulfide reductase activity	2.29E-02
70	GO:0030551: cyclic nucleotide binding	2.42E-02
71	GO:0005249: voltage-gated potassium channel activity	2.42E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.50E-02
73	GO:0008080: N-acetyltransferase activity	2.55E-02
74	GO:0004791: thioredoxin-disulfide reductase activity	2.68E-02
75	GO:0005355: glucose transmembrane transporter activity	2.68E-02
76	GO:0050662: coenzyme binding	2.68E-02
77	GO:0004872: receptor activity	2.82E-02
78	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.96E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.25E-02
80	GO:0016791: phosphatase activity	3.39E-02
81	GO:0005200: structural constituent of cytoskeleton	3.55E-02
82	GO:0008289: lipid binding	4.09E-02
83	GO:0030247: polysaccharide binding	4.32E-02
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.32E-02
85	GO:0042802: identical protein binding	4.46E-02
86	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.46E-02
87	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.48E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.65E-02
89	GO:0004222: metalloendopeptidase activity	4.98E-02
90	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
4	GO:0009507: chloroplast	5.62E-36
5	GO:0009535: chloroplast thylakoid membrane	1.71E-24
6	GO:0009534: chloroplast thylakoid	7.20E-23
7	GO:0009579: thylakoid	3.27E-20
8	GO:0009570: chloroplast stroma	5.24E-19
9	GO:0009941: chloroplast envelope	6.30E-19
10	GO:0009543: chloroplast thylakoid lumen	3.48E-15
11	GO:0031977: thylakoid lumen	2.66E-11
12	GO:0030095: chloroplast photosystem II	2.89E-08
13	GO:0005840: ribosome	6.16E-07
14	GO:0031969: chloroplast membrane	2.35E-05
15	GO:0009654: photosystem II oxygen evolving complex	1.24E-04
16	GO:0048046: apoplast	1.78E-04
17	GO:0005618: cell wall	2.42E-04
18	GO:0043674: columella	2.97E-04
19	GO:0009547: plastid ribosome	2.97E-04
20	GO:0009523: photosystem II	3.49E-04
21	GO:0019898: extrinsic component of membrane	3.49E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.41E-04
23	GO:0030093: chloroplast photosystem I	6.50E-04
24	GO:0010007: magnesium chelatase complex	1.05E-03
25	GO:0016021: integral component of membrane	1.47E-03
26	GO:0015630: microtubule cytoskeleton	1.51E-03
27	GO:0009706: chloroplast inner membrane	3.62E-03
28	GO:0005576: extracellular region	4.36E-03
29	GO:0009295: nucleoid	4.40E-03
30	GO:0010287: plastoglobule	4.50E-03
31	GO:0009533: chloroplast stromal thylakoid	4.53E-03
32	GO:0042807: central vacuole	4.53E-03
33	GO:0009986: cell surface	4.53E-03
34	GO:0008180: COP9 signalosome	6.83E-03
35	GO:0009536: plastid	7.50E-03
36	GO:0009505: plant-type cell wall	7.82E-03
37	GO:0046658: anchored component of plasma membrane	1.04E-02
38	GO:0000311: plastid large ribosomal subunit	1.04E-02
39	GO:0009508: plastid chromosome	1.14E-02
40	GO:0005578: proteinaceous extracellular matrix	1.14E-02
41	GO:0016020: membrane	1.15E-02
42	GO:0000312: plastid small ribosomal subunit	1.24E-02
43	GO:0030076: light-harvesting complex	1.34E-02
44	GO:0015935: small ribosomal subunit	1.79E-02
45	GO:0009522: photosystem I	2.68E-02
46	GO:0005886: plasma membrane	2.74E-02
47	GO:0031225: anchored component of membrane	3.19E-02
48	GO:0005887: integral component of plasma membrane	3.97E-02
49	GO:0019005: SCF ubiquitin ligase complex	4.65E-02